mRNA_Ecto-sp13_S_contig19167.6118.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19167.6118.1
Unique NamemRNA_Ecto-sp13_S_contig19167.6118.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19167.6118.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.070e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 AAAAAPSMVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI 162
            AAAAAPSMVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI
Sbjct: 2824 AAAAAPSMVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI 2877
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BLAST of mRNA_Ecto-sp13_S_contig19167.6118.1 vs. uniprot
Match: D8LT97_ECTSI (Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT97_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 8.350e-24
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    7 AAAPSMVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI 162
            A APSMVAAKDHPDY+KYFKMLKMGLPRGAALQKMATEGKDQAILDTPDAL+
Sbjct: 1941 ATAPSMVAAKDHPDYQKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALV 1992
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BLAST of mRNA_Ecto-sp13_S_contig19167.6118.1 vs. uniprot
Match: A0A3R7BWK8_9STRA (FH2 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BWK8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.830e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 AAAAAPSMVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI 162
            AAAAAP +VAAKDHP Y KYFK++KMG+P      K ++EG + AILDTPDA++
Sbjct:  261 AAAAAPPLVAAKDHPAYAKYFKLMKMGMPLEQIKLKASSEGLNTAILDTPDAML 314
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BLAST of mRNA_Ecto-sp13_S_contig19167.6118.1 vs. uniprot
Match: A0A397CWZ4_9STRA (FH2 domain-containing protein (Fragment) n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CWZ4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.870e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 AAAAAPSMVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI 162
            AAAAAP +VAAKDHP Y KYFK++KMG+P      K ++EG + AILDTPDA++
Sbjct:  818 AAAAAPPLVAAKDHPAYAKYFKLMKMGMPLEQIKLKASSEGLNTAILDTPDAML 871
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BLAST of mRNA_Ecto-sp13_S_contig19167.6118.1 vs. uniprot
Match: A0A3R6ZFI9_9STRA (FH2 domain-containing protein (Fragment) n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZFI9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.880e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 AAAAAPSMVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI 162
            AAAAAP +VAAKDHP Y KYFK++KMG+P      K ++EG + AILDTPDA++
Sbjct: 1168 AAAAAPPLVAAKDHPAYAKYFKLMKMGMPLEQIKLKASSEGLNTAILDTPDAML 1221
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BLAST of mRNA_Ecto-sp13_S_contig19167.6118.1 vs. uniprot
Match: D8LTA3_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.400e-11
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    4 AAAAPSM------VAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI 162
            AA APS+      V AK HP Y KYFKML +GLPR AAL +M+ +G DQAILD PDA++
Sbjct:  681 AAGAPSLGPANYLVQAKYHPKYNKYFKMLSVGLPRSAALLRMSKDGVDQAILDAPDAML 739
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BLAST of mRNA_Ecto-sp13_S_contig19167.6118.1 vs. uniprot
Match: A0A3R6ZMD3_9STRA (GBD/FH3 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZMD3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.480e-11
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   13 APS-MVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI 162
            APS MVAAKDHP Y KYFK++KMG+P      K+++EG D AILDTPDAL+
Sbjct: 1102 APSDMVAAKDHPTYAKYFKLMKMGMPMVQIQLKVSSEGLDPAILDTPDALL 1152
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BLAST of mRNA_Ecto-sp13_S_contig19167.6118.1 vs. uniprot
Match: A0A024TTB1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TTB1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.490e-11
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   13 APS-MVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI 162
            APS MVAAKDHP Y KYFK++KMG+P      K+++EG D AILDTPDAL+
Sbjct: 1199 APSDMVAAKDHPTYAKYFKLMKMGMPMVQIQLKVSSEGLDPAILDTPDALL 1249
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BLAST of mRNA_Ecto-sp13_S_contig19167.6118.1 vs. uniprot
Match: W4GEI5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GEI5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.380e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 AAAAAPSMVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI 162
            AAAAA  +VAAKDHP Y KYFK++KMG+P      K ++EG + AILDTPDA++
Sbjct: 1201 AAAAAAPLVAAKDHPAYAKYFKLMKMGMPLEQIKLKASSEGLNTAILDTPDAML 1254
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19167.6118.1 vs. uniprot
Match: A0A397A2G6_9STRA (FH2 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A2G6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.410e-10
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   10 AAPSMVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI 162
            AA ++VAAKDHP Y KYFK++KMG+P      K ++EG + AILDTPDA++
Sbjct:  313 AAAALVAAKDHPAYAKYFKLMKMGMPLEQIKLKASSEGLNTAILDTPDAML 363
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19167.6118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR06_9PHAE1.070e-25100.00FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LT97_ECTSI8.350e-2494.23Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A3R7BWK8_9STRA6.830e-1261.11FH2 domain-containing protein (Fragment) n=2 Tax=A... [more]
A0A397CWZ4_9STRA6.870e-1261.11FH2 domain-containing protein (Fragment) n=5 Tax=A... [more]
A0A3R6ZFI9_9STRA6.880e-1261.11FH2 domain-containing protein (Fragment) n=6 Tax=A... [more]
D8LTA3_ECTSI2.400e-1159.32UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A3R6ZMD3_9STRA4.480e-1164.71GBD/FH3 domain-containing protein n=1 Tax=Aphanomy... [more]
A0A024TTB1_9STRA4.490e-1164.71Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
W4GEI5_9STRA8.380e-1159.26Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397A2G6_9STRA7.410e-1056.86FH2 domain-containing protein (Fragment) n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19167contigEcto-sp13_S_contig19167:3166..3327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score96.3
Seed ortholog evalue4.1e-18
Seed eggNOG ortholog2880.D8LT97
Model size162
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
Exons1
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
Cds size141
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.1819968-CDS-Ecto-sp13_S_contig19167:3165..33061681462976.1819968-CDS-Ecto-sp13_S_contig19167:3165..3306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19167 3166..3306 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.1965961-UTR-Ecto-sp13_S_contig19167:3306..33271681462976.1965961-UTR-Ecto-sp13_S_contig19167:3306..3327Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19167 3307..3327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19167.6118.1prot_Ecto-sp13_S_contig19167.6118.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19167 3166..3306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19167.6118.1

>prot_Ecto-sp13_S_contig19167.6118.1 ID=prot_Ecto-sp13_S_contig19167.6118.1|Name=mRNA_Ecto-sp13_S_contig19167.6118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALI
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mRNA from alignment at Ecto-sp13_S_contig19167:3166..3327-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19167.6118.1 ID=mRNA_Ecto-sp13_S_contig19167.6118.1|Name=mRNA_Ecto-sp13_S_contig19167.6118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19167:3166..3327- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCAGCGGCAGCGCCGAGTATGGTGGCGGCGAAGGATCACCCTGACTA
CGAGAAGTACTTCAAGATGCTCAAGATGGGTCTACCGCGGGGGGCGGCGC
TTCAGAAGATGGCCACTGAGGGCAAGGACCAGGCGATCCTCGACACGCCA
GACGCACTAATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19167:3166..3327-

>mRNA_Ecto-sp13_S_contig19167.6118.1 ID=mRNA_Ecto-sp13_S_contig19167.6118.1|Name=mRNA_Ecto-sp13_S_contig19167.6118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19167:3166..3327- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCGGCGAAGGATCACCCTGACTACGAGAAGTACTTCAAGATGCT
CAAGATGGGTCTACCGCGGGGGGCGGCGCTTCAGAAGATGGCCACTGAGG
GCAAGGACCAGGCGATCCTCGACACGCCAGACGCACTAATT
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