mRNA_Ecto-sp13_S_contig19144.6110.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19144.6110.1
Unique NamemRNA_Ecto-sp13_S_contig19144.6110.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19144.6110.1 vs. uniprot
Match: D7G1W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W5_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 2.040e-61
Identity = 142/153 (92.81%), Postives = 145/153 (94.77%), Query Frame = 1 
Query:    1 MNLDLDSQKQDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAACEGKGGGRGGDRLTTIENISYVSENYRLSHSGEQDDLRVYKRVSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GVAKPPLRRRTLFGFLRRQ 453
            MNL LDSQK+DCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAACEG GGGRGGDRLTTIE+ISYVSENYRLSHSGEQDDLRVYKRVSPP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GV+K PLRRRT FGFLRRQ
Sbjct:    1 MNLHLDSQKRDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAACEGNGGGRGGDRLTTIEDISYVSENYRLSHSGEQDDLRVYKRVSPPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGVSKLPLRRRTFFGFLRRQ 153
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BLAST of mRNA_Ecto-sp13_S_contig19144.6110.1 vs. uniprot
Match: A0A6H5KTQ0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ0_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 2.030e-49
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:   25 KQDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAACEGKGGGRGGDRLTTIENISYVSENYRLSHSGEQDDLRVYKRVSPP 285
            KQDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYS AACEGKGGGRGGDRL TIE ISYVSENYRLSHSGE+DDLRVYKRVSPP
Sbjct:  122 KQDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSRAACEGKGGGRGGDRLPTIEVISYVSENYRLSHSGEEDDLRVYKRVSPP 208
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19144.6110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1W5_ECTSI2.040e-6192.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTQ0_9PHAE2.030e-4995.40Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19144contigEcto-sp13_S_contig19144:1372..2580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size456
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003880.1
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462975.6335247-CDS-Ecto-sp13_S_contig19144:1371..17081681462975.6335247-CDS-Ecto-sp13_S_contig19144:1371..1708Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19144 1372..1708 -
1681462975.6423254-CDS-Ecto-sp13_S_contig19144:2461..25801681462975.6423254-CDS-Ecto-sp13_S_contig19144:2461..2580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19144 2462..2580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19144.6110.1prot_Ecto-sp13_S_contig19144.6110.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19144 1372..2580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19144.6110.1

>prot_Ecto-sp13_S_contig19144.6110.1 ID=prot_Ecto-sp13_S_contig19144.6110.1|Name=mRNA_Ecto-sp13_S_contig19144.6110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
MNLDLDSQKQDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAAC
EGKGGGRGGDRLTTIENISYVSENYRLSHSGEQDDLRVYKRVSPPPARGD
DTSAAMVGGAGGRKKAAGRAAAAAAVGAGGRRGVAKPPLRRRTLFGFLRR
Q*
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mRNA from alignment at Ecto-sp13_S_contig19144:1372..2580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19144.6110.1 ID=mRNA_Ecto-sp13_S_contig19144.6110.1|Name=mRNA_Ecto-sp13_S_contig19144.6110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19144:1372..2580- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCTCGACCTCGATTCGCAGAAGCAAGACTGCGTGCGACGCCTTGC
CACTGAGCTGGAATCCCTGCAGGACAACGCGGCGGAATTCGGGTCGCAGA
AATCGGGACTGACGGGAAGGTGTGTGTCCCCCGCGTTTTTTTTTTTTGTG
CTCCTGGCAGGTACATCTAGAGGTGTTGTAACTCTAGTGTCGACCAGTAT
GGGCATGCTCTTATACCGCTAAGGGTAGCGAGAAACTGCAGGTGGACGTT
TGCGATGTTTCGGTCCCCTCTGCGTCTGTGAAGTTCGGAATGTAACGGTG
TGTGGCACTTTGATTGGATGGAGGTGCGGCGGGACGATCTTGTCGTTTTT
CGAGTTGACTGGATCCATCCATCGCGTCGTATCGCCTCTCCTCTCGCCGC
CCGTCGCTGCCTGCCCCCTCGTGTCCGGTGTGCGCCTGTGTTGTTATTCC
GAAGCATCCTCTCTCGTTTCAATCTGCCACCCACACCGTACAGTACCAAT
ACAACACACACACATACACCCCGGAGAAGAGGTTAGTCTCGCCCATGCCG
CCCCCTCACGGGGTCCGTTAAGGTCATTTATGCATAGAGGTGTTCTTGGT
TTTCACCCGCACTGAAACTGACGTCTTTTCATTGGTCAGCCGGTAGGCAC
GGTCGATGCTAACAACCAAACATACACACAGAGTTGCTTATGGATAGCTC
CTCATGCCGCCCACCCACAGGGTCACAAACTATCTATCCCCGTAGCAGCA
TCTTGTGTTTTTAACCGCGCTGAGACGGGCGTTTACGTCGGTCACAGGTA
AGCCCGGTCCCTACTAACAATCATAAACAACAAAACGCTCGGTTTTTCTC
TCTCCTTGCCCCTCCCCTCCAGCTGGAAGCTTATCTACTCAAGCGCGGCC
TGCGAGGGCAAAGGTGGCGGCAGGGGGGGCGACCGCCTGACGACCATCGA
GAACATCTCGTACGTCTCCGAGAACTACCGCCTCTCGCACTCGGGCGAGC
AGGACGACCTCCGCGTCTACAAGCGGGTCTCCCCACCCCCGGCGCGGGGC
GACGACACCTCGGCGGCGATGGTCGGGGGTGCGGGCGGCCGAAAGAAGGC
GGCGGGGCGGGCGGCGGCGGCGGCGGCCGTCGGTGCGGGCGGGCGGCGGG
GGGTGGCCAAGCCGCCGTTGCGGCGCCGGACGTTGTTTGGGTTTCTTCGG
CGCCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19144:1372..2580-

>mRNA_Ecto-sp13_S_contig19144.6110.1 ID=mRNA_Ecto-sp13_S_contig19144.6110.1|Name=mRNA_Ecto-sp13_S_contig19144.6110.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19144:1372..2580- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCTCGACCTCGATTCGCAGAAGCAAGACTGCGTGCGACGCCTTGC
CACTGAGCTGGAATCCCTGCAGGACAACGCGGCGGAATTCGGGTCGCAGA
AATCGGGACTGACGGGAAGCTGGAAGCTTATCTACTCAAGCGCGGCCTGC
GAGGGCAAAGGTGGCGGCAGGGGGGGCGACCGCCTGACGACCATCGAGAA
CATCTCGTACGTCTCCGAGAACTACCGCCTCTCGCACTCGGGCGAGCAGG
ACGACCTCCGCGTCTACAAGCGGGTCTCCCCACCCCCGGCGCGGGGCGAC
GACACCTCGGCGGCGATGGTCGGGGGTGCGGGCGGCCGAAAGAAGGCGGC
GGGGCGGGCGGCGGCGGCGGCGGCCGTCGGTGCGGGCGGGCGGCGGGGGG
TGGCCAAGCCGCCGTTGCGGCGCCGGACGTTGTTTGGGTTTCTTCGGCGC
CAGTAG
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