mRNA_Ecto-sp13_S_contig19143.6109.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19143.6109.1
Unique NamemRNA_Ecto-sp13_S_contig19143.6109.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: D7FHI7_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 1.400e-127
Identity = 201/248 (81.05%), Postives = 211/248 (85.08%), Query Frame = 1
Query:   13 SIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDIGLLDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENT 756
            SIDVGDL+GDG PDVVVAFQT+F LTWFSNL  LGEFSVG DIDTYE+GD S  VKVADLDGDGDLDVI ASKQGDRVTWYENTDGEATFA+GVDISTTADGA+TLALADLDGDDDLDV+SASVFSGLA                         P   +DVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRD+GLLDSARN+VAVDLDNDGD+DLVACDGVGGSIVWYENT
Sbjct:  115 SIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLYGLGEFSVGADIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFAVGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXXPADD---PAGGKDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACDGVGGSIVWYENT 359          
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: D7FHI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI6_ECTSI)

HSP 1 Score: 378 bits (970), Expect = 2.000e-127
Identity = 197/248 (79.44%), Postives = 211/248 (85.08%), Query Frame = 1
Query:   13 SIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDIGLLDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENT 756
            SIDVGDL+GDG PDVVVAFQT+F LTWFSNLD LGEFSVGTDIDTYE+GD S  VKVADLDGDGDLDVI ASKQGDRVTWYENTDGEATFALGVDISTTADGA+TLALADLDGDDDLDV+SASVFSGLA                 +       P   +DVVTADIDGDGD+DIISASFDGNHTAG+FPDGRILWLENDG GSFAEGRD+GLLDSARN+VAVDLDNDGD+DL+AC+ VGG IVWYENT
Sbjct:    5 SIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLDGLGEFSVGTDIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXEPADD---PAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGLGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLLACENVGGHIVWYENT 249          
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: D7FHI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 6.400e-127
Identity = 203/264 (76.89%), Postives = 209/264 (79.17%), Query Frame = 1
Query:   13 SIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDIGLLDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENTDGTGNFSEVIITTDVG 804
            SIDVGDLDGDG PDVVVAFQTSF LTWFSNLD LGEFSVGTDIDTYE+GDHSNFVKVADLDGDGDLDVI ASKQGDRVTWYENTDGEATFALGVDISTTADGA TLALADLDGDDDLD+VSASV SGLA                                                SFDGNHTAGSFPDGRILWLENDGSGSFAEG+DIGLL+SARN+VAVDLDNDGD+DLV CDGVGGSIVWYENTDGTGNFSEVIITTDVG
Sbjct:  154 SIDVGDLDGDGSPDVVVAFQTSFQLTWFSNLDGLGEFSVGTDIDTYEDGDHSNFVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAFTLALADLDGDDDLDIVSASVVSGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXSFDGNHTAGSFPDGRILWLENDGSGSFAEGKDIGLLESARNVVAVDLDNDGDIDLVTCDGVGGSIVWYENTDGTGNFSEVIITTDVG 412          
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: D8LE48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE48_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 4.230e-57
Identity = 122/243 (50.21%), Postives = 142/243 (58.44%), Query Frame = 1
Query:    4 QTRSIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIGLLDSARNLVAVDLDNDGDVDLVACDGVG 729
            + RSIDVGDLDGDGFPDV VAFQ S  + WF N D  G F+ GTDIDT   G  SN VK+AD+DGDGDLDV++A K GDRVTWYEN DGE TFA+G+D+STTADGA  LA                                       +           +DVVT              S+DG+H + ++ DGRI W+EN DG G+F EG DI  LDSAR +V VDLDNDGDVDLVACD VG
Sbjct:   42 ELRSIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSN-VKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGE------PAKDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVG 276          
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: A0A6H5K481_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K481_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 6.270e-52
Identity = 111/231 (48.05%), Postives = 148/231 (64.07%), Query Frame = 1
Query:    1 SQTRSIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLAS-YENSNG-ASFVIAIDFRQ--NDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIGLLDSARNLVAV 678
            S   S+ V DL+GDGFPDVVVAF  S T+TW+ N D LG FS+G DI T  +G  +  VK AD+DGDGD D+I+ S   DRVTWYENTDGE TFA+G+DIS T+ GA     AD+DGD+ +D+V AS      + ++N++G  +F + +D  Q  N + Y        V   D+DGDGD+D++S         GS+ DGR+ W EN DG+G+FA G+DI +L S  + VAV
Sbjct:  102 SAAGSVAVADLNGDGFPDVVVAFPYSDTVTWYRNSDGLGSFSLGVDIATDTDG--AWVVKCADVDGDGDFDIISVSSFDDRVTWYENTDGEGTFAVGLDISATSSGADMAVAADIDGDEAVDIVVASFDDDRVTWFKNTDGKGAFALGVDLAQDANGATY--------VAAGDLDGDGDLDVVS---------GSYYDGRVTWYENTDGAGTFAVGQDIDILPSVASAVAV 313          
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: A0A2D4XKR0_9FLAO (Por_Secre_tail domain-containing protein n=1 Tax=Aequorivita sp. TaxID=1872390 RepID=A0A2D4XKR0_9FLAO)

HSP 1 Score: 167 bits (422), Expect = 1.130e-44
Identity = 114/308 (37.01%), Postives = 161/308 (52.27%), Query Frame = 1
Query:   28 DLDGDGFPDVVVAFQT-SFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLASYE--------------------------------------NSNGASFVIAID-------FRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIG-LLDSARNLVAVDLDNDGDVDLVACDG--VGGSIVWYENTDGTGNF-SEVIITTD 798
            DLDGDG  DVV   +T S+ + WF NLD LG F     ++     D    + +ADLDGDGD+D++T +   D++ WYEN DG+  F++   IS TADGA T+   DLDGD D+DV+S S FSGLA                                         NS   + +  ID       F + +S+Y +     +++TAD+DGDGD D+++ SF  N          + W EN +G G+F   + I  +LD A  + A DLDNDGD+D++   G    G IVW+EN DGTG+F S+ +I+T+
Sbjct:   43 DLDGDGDLDVVSGSRTGSYNIAWFENLDGLGNFGTENIVEN-NLFDEVYSIFLADLDGDGDMDILTTAFSLDKIIWYENLDGQGNFSVQKIISNTADGAFTVVAGDLDGDGDMDVISGSDFSGLAXXXXXXXXXXFFMHLIDXXXXXXXXXXXXXXXXXXXXXXXGNSTAPNKIYWIDNIDGHGTFGEPNSIYEMGQYVTNLITADVDGDGDTDVLTVSFGDN---------EVAWFENLNGFGNFGPKKTISNILDKALEVFAADLDNDGDIDVLTSSGGTFDGEIVWFENLDGTGSFGSKNVISTE 340          
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: A0A1F3PQL1_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3PQL1_9BACT)

HSP 1 Score: 166 bits (419), Expect = 1.180e-42
Identity = 104/266 (39.10%), Postives = 147/266 (55.26%), Query Frame = 1
Query:   10 RSIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSG-LASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIGL-LDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENTDGTGNFS-EVIITT 795
             S+   D+DGDG  DV+ A      + W+ N D  G F     I     G  +N V   D+DGDGD+DV++AS+  +++ WYENTDG  TF     IS  A+GA ++   D+DGD D+DV+SAS     +A YEN++G        F     L     +   + +ADIDGDGD+D++SASF          D +I W EN DGSG+F   + I    + AR++   D+D DGD+D+++       I WYENTDG G+F  + +ITT
Sbjct:  194 NSVYCADMDGDGDMDVLSASWNDDKIAWYENTDGNGTFGTQQVISINANG--ANSVYCGDIDGDGDMDVLSASEDDNKIAWYENTDGNGTFGTQQVISINANGATSVYCGDIDGDGDMDVLSASEDDNKIAWYENTDGNG-----TFGTQQVLTIAANTPESICSADIDGDGDMDVLSASFH---------DDKIAWYENTDGSGTFGTQQSITTDANGARDVCCADIDGDGDMDVLSASSTDDKIAWYENTDGNGSFGIQQVITT 443          
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: UPI0015CC037F (T9SS type A sorting domain-containing protein n=1 Tax=Winogradskyella costae TaxID=2697008 RepID=UPI0015CC037F)

HSP 1 Score: 166 bits (421), Expect = 1.230e-42
Identity = 105/264 (39.77%), Postives = 150/264 (56.82%), Query Frame = 1
Query:   13 SIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSG-LASYENSNG-----ASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIGLLD--SARNLVAVDLDNDGDVDLVACDGVGGSIVWYENTDGTGNFS 777
            S  V D+DGDG  DV+ A +    + W+ N+D LG F +G        G   N V  AD+DGDGD+DV++AS+  D + WYEN +G   F     I+T ADGA ++   D+DGD D+DVVSAS +   +A YEN++G     +  +I  +     SLY          ++D+DGDGD+DI+SASF+ N         +I W EN DG G+F + + I   D   A ++ A D+D DGD+D+++     G I W+EN +G GNFS
Sbjct:  403 STHVSDIDGDGDVDVLSASKGDGKIAWYENIDGLGSFDLGLQRTVISNGSEFNSVYSADIDGDGDMDVLSASRNSDVIAWYENINGLGNFGQQQQITTDADGAQSVYAIDIDGDGDMDVVSASAYDNKIAWYENTDGLGGFGSQQIITTNAEFAISLY----------SSDLDGDGDMDIVSASFNDN---------KIAWYENTDGQGNF-DSQQIITTDVLGASSVYAADIDGDGDMDILSTSTSEGKIDWFENINGLGNFS 646          
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: A0A1W9LJS4_9DELT (Cadherin_4 domain-containing protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9LJS4_9DELT)

HSP 1 Score: 165 bits (418), Expect = 2.910e-42
Identity = 105/260 (40.38%), Postives = 149/260 (57.31%), Query Frame = 1
Query:   13 SIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSG-LASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTA-DIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDIG--LLDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENTDGTGNFSE 780
            S+  GD+DGDG  DVV A      + W+ N D  G F     I    EG  ++FV   D+DGDGD DV++AS   +++ WYENTDG+ +FA    I+T ADG ++L++AD+D D D DV+SAS+  G +A YEN++GA   ++    QN  +Y    S+   V A D+D DGD D++S S +            I W ENDG+G+F     I   +    +++ ++DLD D D D+V+       IVWYENTDG G F+E
Sbjct:  390 SVFAGDIDGDGDADVVSASANDNKIAWYENTDGKGSFGTQKLISLEAEG--ASFVFAGDIDGDGDADVLSASANDNKIAWYENTDGKGSFAQQNTITTQADGVLSLSIADVDADGDSDVISASLNDGKVAWYENTDGAGAFVS----QN-VIYAATGSRVSFVFAGDVDSDGDADVLSLSENSE---------IITWYENDGAGNFGTPMLINPEINRGIKSVFSIDLDGDNDADVVSAFAFDDKIVWYENTDGKGTFTE 633          
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: UPI00165541A0 (T9SS type A sorting domain-containing protein n=1 Tax=Kordia aestuariivivens TaxID=2759037 RepID=UPI00165541A0)

HSP 1 Score: 164 bits (414), Expect = 1.050e-41
Identity = 112/273 (41.03%), Postives = 153/273 (56.04%), Query Frame = 1
Query:   10 RSIDVGDLDGDGFPDVVVAFQTSF-TLTWFSNLDSLGEFS----VGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSA-SVFSGLASYENSNGASFVIAIDFRQNDSL-YCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIGL-LDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENTDGTGNF-SEVIITTD 798
            +S+   D+DGDG  D +     SF  + WF N D  G +     + TDID  E       V   DLDGDGD+DV++AS   +++ WYENTDG+ TF     I+T A  A ++  ADLDGD D+D+VS  S  S +  +EN++G       +F    ++ Y   F+Q  V   DIDGDGD+DI+SAS           D +I W EN DG G+F   + I    DSA ++ A+DLD DGD+D+++       I WYENTDG G F ++ IITTD
Sbjct:  395 KSVYAADIDGDGDLDAISGSGGSFGNIAWFENTDGQGSYGPQKIITTDIDDAES------VFAIDLDGDGDIDVLSASYDDNKIAWYENTDGQGTFGPQQIITTGASNAESVYAADLDGDGDMDIVSTYSTISSVVWFENTDGQG-----NFGARQTITYNADFAQA-VYAEDIDGDGDMDILSASSG---------DDKIAWYENTDGQGNFGTQQVISTNADSASSVYAIDLDGDGDIDVLSASRADDKIAWYENTDGQGTFGAQQIITTD 646          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHI7_ECTSI1.400e-12781.05N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
D7FHI6_ECTSI2.000e-12779.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHI8_ECTSI6.400e-12776.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LE48_ECTSI4.230e-5750.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K481_9PHAE6.270e-5248.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4XKR0_9FLAO1.130e-4437.01Por_Secre_tail domain-containing protein n=1 Tax=A... [more]
A0A1F3PQL1_9BACT1.180e-4239.10Por_Secre_tail domain-containing protein n=2 Tax=B... [more]
UPI0015CC037F1.230e-4239.77T9SS type A sorting domain-containing protein n=1 ... [more]
A0A1W9LJS4_9DELT2.910e-4240.38Cadherin_4 domain-containing protein (Fragment) n=... [more]
UPI00165541A01.050e-4141.03T9SS type A sorting domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19143contigEcto-sp13_S_contig19143:874..3339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score385.6
Seed ortholog evalue2.2e-104
Seed eggNOG ortholog2880.D7FHI7
Model size903
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
EggNOG OGs29QRV@1,2RX97@2759
Cds size903
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462975.5773466-CDS-Ecto-sp13_S_contig19143:873..11111681462975.5773466-CDS-Ecto-sp13_S_contig19143:873..1111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19143 874..1111 +
1681462975.5888267-CDS-Ecto-sp13_S_contig19143:1793..19771681462975.5888267-CDS-Ecto-sp13_S_contig19143:1793..1977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19143 1794..1977 +
1681462975.6009119-CDS-Ecto-sp13_S_contig19143:2235..26261681462975.6009119-CDS-Ecto-sp13_S_contig19143:2235..2626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19143 2236..2626 +
1681462975.6092017-CDS-Ecto-sp13_S_contig19143:3249..33391681462975.6092017-CDS-Ecto-sp13_S_contig19143:3249..3339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19143 3250..3339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19143.6109.1prot_Ecto-sp13_S_contig19143.6109.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19143 874..3339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19143.6109.1

>prot_Ecto-sp13_S_contig19143.6109.1 ID=prot_Ecto-sp13_S_contig19143.6109.1|Name=mRNA_Ecto-sp13_S_contig19143.6109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp
SQTRSIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTY
EEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDI
STTADGAVTLALADLDGDDDLDVVSASVFSGLASYENSNGASFVIAIDFR
QNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWL
ENDGSGSFAEGRDIGLLDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYE
NTDGTGNFSEVIITTDVGAHSLIAVDLDGDGDFDIATANRDDGHVTWYEN
L
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mRNA from alignment at Ecto-sp13_S_contig19143:874..3339+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19143.6109.1 ID=mRNA_Ecto-sp13_S_contig19143.6109.1|Name=mRNA_Ecto-sp13_S_contig19143.6109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19143:874..3339+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCAAACCAGATCGATTGACGTCGGAGATCTGGATGGCGACGGGTTCCC TGATGTCGTCGTAGCCTTTCAGACTTCCTTCACATTGACGTGGTTTAGTA ATCTCGACAGCCTGGGCGAATTTTCGGTCGGCACTGACATCGATACGTAC GAAGAAGGGGATCACTCAAATTTTGTCAAGGTCGCGGATCTCGACGGGGA TGGGGACTTGGACGTGATTACGGCATCGAAACAAGGCGGTAAGCGTGCCT CGAACTTGGACAGCCGTTGAGTAGACGCCATTCATGAGTCTGATTTGTAC GGTCATGCTTGGAAATGTTGCTGTTGTTGGGAAATGTTTGCCATTAGTGC CTCATGTATCGTTGTAATAGCTAATCTCCGATGTGGTGCAGCTGTCCAAG GCGCGAAAATTCTTGCCCGAAGCCCACTCCTAACATCTCACAACGACCCC AACCAAAGGCCCCCACCACAAGGGGGGGTTCGTGAGACTAGAACGAAGAA TCACTTCTAAGTAGTAGTAGCACGACGGCAGAGGGATGTTTCGAAGTGAC CTGCGCTTGCGAGCCTGATCCTACGTGCCTGCGTGGACTCCGGCGCAAGA GGGCGGGCAACACGGTACATGGTCCAAGCATACGAGCTTGAGGCCGTTAA ACAAAGCAAGCGCCCTGTAGTGGATGGCAACATGAGTCTGCTGGTATCAT CGGCGGCCAGTGTGGTTCCGCTGCCATGAATGCCTCCCAAGTCGTCGCCA GACCCCTTGTTCGACGCACGTGCTTTTACCCTTCCCATATTATCGGTGGC TAGTATGGTTCCGCCGCTATTGTCGCATGAATGACCCCCAAGTCGTCACC ATCGACGCATGTACTCCGCCCTATCCCGTCTCCGACCCGTATTTATTCGC ACCGCCGCCGCCGTCGCCAGATCGAGTCACGTGGTACGAGAACACCGACG GGGAGGCGACGTTTGCACTCGGCGTTGATATCTCGACGACCGCCGACGGT GCTGTCACACTGGCTTTGGCAGACTTGGACGGCGACGACGACCTCGACGT CGTTTCGGCGTCCGTTTTCAGCGGCTTGGCGTCGTACGAGAACTCGAACG GAGCGTTTTCTTTAGGAGTGAGTTTGGAACCGGCCGACCCTGCTGGTGGA AAGTGAGTGAATGTTTGTGTTTGTGGGTAGTGTTGGTCCGTTTGATCGGT CTGGTGTTGGTCTTAGCTCGGTCACATTGAGCTCGTACTTCTGGTTTCTT TGATTCTTGAGTTCGTTCCCAGAGCAGCGGAAAGGGAAAGAAAAAGGGGA TTAAAACGCTAGCTTCAAAGCACCTCTCAACGTAAGCACGATAGTCCTTG TTGGTTCGGCAGGTCGTTTGTTATCGCGATTGATTTTCGTCAAAATGATT CATTGTATTGCCTCCCGTTTTCACAAAGGGACGTCGTTACGGCCGACATC GACGGAGACGGAGACATCGACATCATCTCGGCGTCCTTCGACGGCAACCA CACCGCTGGAAGCTTCCCCGACGGCCGCATTCTCTGGCTCGAGAACGACG GCTCGGGAAGCTTCGCGGAGGGGAGGGACATCGGCTTGCTCGATTCTGCG AGGAACTTGGTGGCCGTGGACCTCGACAACGACGGGGACGTAGATCTTGT GGCCTGCGACGGCGTCGGGGGGTCCATCGTGTGGTACGAAAACACGGACG GGACGGGGAATTTCTCTGAGGTCATCATCACCACCGATGTTGGGGCACAT TCGGTGAGTGTGCCAGACGACACCGTGCCGACCCGCTTGTAACAAAAGTG TTTGTGAGAAACCGAGGCCCACAGTTTGAACAACCTTATGAAAATGCCCT GGAAACTGAGCTTTGCGGCCGGCGCTACACTAATTCCTACATAAAAGCCT TTGCTCGGAAGTGGGACAAAACAAGGTTCGAGCCTCGCTCAAAATTAAAA GTAGGTGTTCCTCTCGACGAATAGTACAAGGACAAAATGTTTTCGAAAGG GTGTTGGTGAGAGCGGGCACAGCCGAGATATGCTGGGTTTCTCGCAGACA GCAAAAGGTCGAATGCTGTTGTTGTTGTTTTTGGATGTGGTGCAACCTCA TGCTTCCCACCGTATTGTGCCTTCTCAGCAAATATATCGCAATGCTTCGA CGTGGAGAATCGCGAAATCCTATTAGTGCAGGCAGGGTGAATAGAGCGCA AAATTTTGAACGCTCGTAGCCGACGTAAGGCCATTCATGCCCCCATTCTC ATCCTTGTCCACGCACGACCCTGACGAAATACCCGGCATGATCCCGTTCT CATCCTTGTCCGCGCACCCCTGACGCAATGCCATCCACGCCCCTTGCCCA CCCCCGTCTCAACAACGCTGCTTCAGTTGATCGCTGTTGACCTGGACGGT GACGGCGACTTCGATATAGCGACCGCAAATCGGGACGACGGCCACGTGAC CTGGTACGAGAACCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19143:874..3339+

>mRNA_Ecto-sp13_S_contig19143.6109.1 ID=mRNA_Ecto-sp13_S_contig19143.6109.1|Name=mRNA_Ecto-sp13_S_contig19143.6109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19143:874..3339+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCAAACCAGATCGATTGACGTCGGAGATCTGGATGGCGACGGGTTCCC
TGATGTCGTCGTAGCCTTTCAGACTTCCTTCACATTGACGTGGTTTAGTA
ATCTCGACAGCCTGGGCGAATTTTCGGTCGGCACTGACATCGATACGTAC
GAAGAAGGGGATCACTCAAATTTTGTCAAGGTCGCGGATCTCGACGGGGA
TGGGGACTTGGACGTGATTACGGCATCGAAACAAGGCGATCGAGTCACGT
GGTACGAGAACACCGACGGGGAGGCGACGTTTGCACTCGGCGTTGATATC
TCGACGACCGCCGACGGTGCTGTCACACTGGCTTTGGCAGACTTGGACGG
CGACGACGACCTCGACGTCGTTTCGGCGTCCGTTTTCAGCGGCTTGGCGT
CGTACGAGAACTCGAACGGAGCGTCGTTTGTTATCGCGATTGATTTTCGT
CAAAATGATTCATTGTATTGCCTCCCGTTTTCACAAAGGGACGTCGTTAC
GGCCGACATCGACGGAGACGGAGACATCGACATCATCTCGGCGTCCTTCG
ACGGCAACCACACCGCTGGAAGCTTCCCCGACGGCCGCATTCTCTGGCTC
GAGAACGACGGCTCGGGAAGCTTCGCGGAGGGGAGGGACATCGGCTTGCT
CGATTCTGCGAGGAACTTGGTGGCCGTGGACCTCGACAACGACGGGGACG
TAGATCTTGTGGCCTGCGACGGCGTCGGGGGGTCCATCGTGTGGTACGAA
AACACGGACGGGACGGGGAATTTCTCTGAGGTCATCATCACCACCGATGT
TGGGGCACATTCGTTGATCGCTGTTGACCTGGACGGTGACGGCGACTTCG
ATATAGCGACCGCAAATCGGGACGACGGCCACGTGACCTGGTACGAGAAC
CTC
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