mRNA_Ecto-sp13_S_contig19143.6109.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: D7FHI7_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI) HSP 1 Score: 382 bits (980), Expect = 1.400e-127 Identity = 201/248 (81.05%), Postives = 211/248 (85.08%), Query Frame = 1
Query: 13 SIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDIGLLDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENT 756
SIDVGDL+GDG PDVVVAFQT+F LTWFSNL LGEFSVG DIDTYE+GD S VKVADLDGDGDLDVI ASKQGDRVTWYENTDGEATFA+GVDISTTADGA+TLALADLDGDDDLDV+SASVFSGLA P +DVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRD+GLLDSARN+VAVDLDNDGD+DLVACDGVGGSIVWYENT
Sbjct: 115 SIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLYGLGEFSVGADIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFAVGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXXPADD---PAGGKDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACDGVGGSIVWYENT 359
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: D7FHI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI6_ECTSI) HSP 1 Score: 378 bits (970), Expect = 2.000e-127 Identity = 197/248 (79.44%), Postives = 211/248 (85.08%), Query Frame = 1
Query: 13 SIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDIGLLDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENT 756
SIDVGDL+GDG PDVVVAFQT+F LTWFSNLD LGEFSVGTDIDTYE+GD S VKVADLDGDGDLDVI ASKQGDRVTWYENTDGEATFALGVDISTTADGA+TLALADLDGDDDLDV+SASVFSGLA + P +DVVTADIDGDGD+DIISASFDGNHTAG+FPDGRILWLENDG GSFAEGRD+GLLDSARN+VAVDLDNDGD+DL+AC+ VGG IVWYENT
Sbjct: 5 SIDVGDLNGDGSPDVVVAFQTTFQLTWFSNLDGLGEFSVGTDIDTYEDGDQSRSVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAITLALADLDGDDDLDVISASVFSGLAXXXXXXXXXXXXXXXXXEPADD---PAGGKDVVTADIDGDGDMDIISASFDGNHTAGNFPDGRILWLENDGLGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLLACENVGGHIVWYENT 249
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: D7FHI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI) HSP 1 Score: 380 bits (975), Expect = 6.400e-127 Identity = 203/264 (76.89%), Postives = 209/264 (79.17%), Query Frame = 1
Query: 13 SIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDIGLLDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENTDGTGNFSEVIITTDVG 804
SIDVGDLDGDG PDVVVAFQTSF LTWFSNLD LGEFSVGTDIDTYE+GDHSNFVKVADLDGDGDLDVI ASKQGDRVTWYENTDGEATFALGVDISTTADGA TLALADLDGDDDLD+VSASV SGLA SFDGNHTAGSFPDGRILWLENDGSGSFAEG+DIGLL+SARN+VAVDLDNDGD+DLV CDGVGGSIVWYENTDGTGNFSEVIITTDVG
Sbjct: 154 SIDVGDLDGDGSPDVVVAFQTSFQLTWFSNLDGLGEFSVGTDIDTYEDGDHSNFVKVADLDGDGDLDVIMASKQGDRVTWYENTDGEATFALGVDISTTADGAFTLALADLDGDDDLDIVSASVVSGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXSFDGNHTAGSFPDGRILWLENDGSGSFAEGKDIGLLESARNVVAVDLDNDGDIDLVTCDGVGGSIVWYENTDGTGNFSEVIITTDVG 412
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: D8LE48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE48_ECTSI) HSP 1 Score: 199 bits (506), Expect = 4.230e-57 Identity = 122/243 (50.21%), Postives = 142/243 (58.44%), Query Frame = 1
Query: 4 QTRSIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIGLLDSARNLVAVDLDNDGDVDLVACDGVG 729
+ RSIDVGDLDGDGFPDV VAFQ S + WF N D G F+ GTDIDT G SN VK+AD+DGDGDLDV++A K GDRVTWYEN DGE TFA+G+D+STTADGA LA + +DVVT S+DG+H + ++ DGRI W+EN DG G+F EG DI LDSAR +V VDLDNDGDVDLVACD VG
Sbjct: 42 ELRSIDVGDLDGDGFPDVAVAFQLSDHVVWFRNADGQGGFTTGTDIDTDAGGSPSN-VKLADVDGDGDLDVVSAWKTGDRVTWYEN-DGEGTFAIGLDLSTTADGAYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLERGE------PAKDVVTXXXXXXXXXXXXXXSYDGSHASSNYYDGRIFWIENTDGEGTFGEGEDIDSLDSARIVVPVDLDNDGDVDLVACDNVG 276
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: A0A6H5K481_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K481_9PHAE) HSP 1 Score: 187 bits (476), Expect = 6.270e-52 Identity = 111/231 (48.05%), Postives = 148/231 (64.07%), Query Frame = 1
Query: 1 SQTRSIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLAS-YENSNG-ASFVIAIDFRQ--NDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIGLLDSARNLVAV 678
S S+ V DL+GDGFPDVVVAF S T+TW+ N D LG FS+G DI T +G + VK AD+DGDGD D+I+ S DRVTWYENTDGE TFA+G+DIS T+ GA AD+DGD+ +D+V AS + ++N++G +F + +D Q N + Y V D+DGDGD+D++S GS+ DGR+ W EN DG+G+FA G+DI +L S + VAV
Sbjct: 102 SAAGSVAVADLNGDGFPDVVVAFPYSDTVTWYRNSDGLGSFSLGVDIATDTDG--AWVVKCADVDGDGDFDIISVSSFDDRVTWYENTDGEGTFAVGLDISATSSGADMAVAADIDGDEAVDIVVASFDDDRVTWFKNTDGKGAFALGVDLAQDANGATY--------VAAGDLDGDGDLDVVS---------GSYYDGRVTWYENTDGAGTFAVGQDIDILPSVASAVAV 313
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: A0A2D4XKR0_9FLAO (Por_Secre_tail domain-containing protein n=1 Tax=Aequorivita sp. TaxID=1872390 RepID=A0A2D4XKR0_9FLAO) HSP 1 Score: 167 bits (422), Expect = 1.130e-44 Identity = 114/308 (37.01%), Postives = 161/308 (52.27%), Query Frame = 1
Query: 28 DLDGDGFPDVVVAFQT-SFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSGLASYE--------------------------------------NSNGASFVIAID-------FRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIG-LLDSARNLVAVDLDNDGDVDLVACDG--VGGSIVWYENTDGTGNF-SEVIITTD 798
DLDGDG DVV +T S+ + WF NLD LG F ++ D + +ADLDGDGD+D++T + D++ WYEN DG+ F++ IS TADGA T+ DLDGD D+DV+S S FSGLA NS + + ID F + +S+Y + +++TAD+DGDGD D+++ SF N + W EN +G G+F + I +LD A + A DLDNDGD+D++ G G IVW+EN DGTG+F S+ +I+T+
Sbjct: 43 DLDGDGDLDVVSGSRTGSYNIAWFENLDGLGNFGTENIVEN-NLFDEVYSIFLADLDGDGDMDILTTAFSLDKIIWYENLDGQGNFSVQKIISNTADGAFTVVAGDLDGDGDMDVISGSDFSGLAXXXXXXXXXXFFMHLIDXXXXXXXXXXXXXXXXXXXXXXXGNSTAPNKIYWIDNIDGHGTFGEPNSIYEMGQYVTNLITADVDGDGDTDVLTVSFGDN---------EVAWFENLNGFGNFGPKKTISNILDKALEVFAADLDNDGDIDVLTSSGGTFDGEIVWFENLDGTGSFGSKNVISTE 340
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: A0A1F3PQL1_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3PQL1_9BACT) HSP 1 Score: 166 bits (419), Expect = 1.180e-42 Identity = 104/266 (39.10%), Postives = 147/266 (55.26%), Query Frame = 1
Query: 10 RSIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSG-LASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIGL-LDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENTDGTGNFS-EVIITT 795
S+ D+DGDG DV+ A + W+ N D G F I G +N V D+DGDGD+DV++AS+ +++ WYENTDG TF IS A+GA ++ D+DGD D+DV+SAS +A YEN++G F L + + +ADIDGDGD+D++SASF D +I W EN DGSG+F + I + AR++ D+D DGD+D+++ I WYENTDG G+F + +ITT
Sbjct: 194 NSVYCADMDGDGDMDVLSASWNDDKIAWYENTDGNGTFGTQQVISINANG--ANSVYCGDIDGDGDMDVLSASEDDNKIAWYENTDGNGTFGTQQVISINANGATSVYCGDIDGDGDMDVLSASEDDNKIAWYENTDGNG-----TFGTQQVLTIAANTPESICSADIDGDGDMDVLSASFH---------DDKIAWYENTDGSGTFGTQQSITTDANGARDVCCADIDGDGDMDVLSASSTDDKIAWYENTDGNGSFGIQQVITT 443
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: UPI0015CC037F (T9SS type A sorting domain-containing protein n=1 Tax=Winogradskyella costae TaxID=2697008 RepID=UPI0015CC037F) HSP 1 Score: 166 bits (421), Expect = 1.230e-42 Identity = 105/264 (39.77%), Postives = 150/264 (56.82%), Query Frame = 1
Query: 13 SIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSG-LASYENSNG-----ASFVIAIDFRQNDSLYCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIGLLD--SARNLVAVDLDNDGDVDLVACDGVGGSIVWYENTDGTGNFS 777
S V D+DGDG DV+ A + + W+ N+D LG F +G G N V AD+DGDGD+DV++AS+ D + WYEN +G F I+T ADGA ++ D+DGD D+DVVSAS + +A YEN++G + +I + SLY ++D+DGDGD+DI+SASF+ N +I W EN DG G+F + + I D A ++ A D+D DGD+D+++ G I W+EN +G GNFS
Sbjct: 403 STHVSDIDGDGDVDVLSASKGDGKIAWYENIDGLGSFDLGLQRTVISNGSEFNSVYSADIDGDGDMDVLSASRNSDVIAWYENINGLGNFGQQQQITTDADGAQSVYAIDIDGDGDMDVVSASAYDNKIAWYENTDGLGGFGSQQIITTNAEFAISLY----------SSDLDGDGDMDIVSASFNDN---------KIAWYENTDGQGNF-DSQQIITTDVLGASSVYAADIDGDGDMDILSTSTSEGKIDWFENINGLGNFS 646
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: A0A1W9LJS4_9DELT (Cadherin_4 domain-containing protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9LJS4_9DELT) HSP 1 Score: 165 bits (418), Expect = 2.910e-42 Identity = 105/260 (40.38%), Postives = 149/260 (57.31%), Query Frame = 1
Query: 13 SIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSASVFSG-LASYENSNGASFVIAIDFRQNDSLYCLPFSQRDVVTA-DIDGDGDIDIISASFDGNHTAGSFPDGRILWLENDGSGSFAEGRDIG--LLDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENTDGTGNFSE 780
S+ GD+DGDG DVV A + W+ N D G F I EG ++FV D+DGDGD DV++AS +++ WYENTDG+ +FA I+T ADG ++L++AD+D D D DV+SAS+ G +A YEN++GA ++ QN +Y S+ V A D+D DGD D++S S + I W ENDG+G+F I + +++ ++DLD D D D+V+ IVWYENTDG G F+E
Sbjct: 390 SVFAGDIDGDGDADVVSASANDNKIAWYENTDGKGSFGTQKLISLEAEG--ASFVFAGDIDGDGDADVLSASANDNKIAWYENTDGKGSFAQQNTITTQADGVLSLSIADVDADGDSDVISASLNDGKVAWYENTDGAGAFVS----QN-VIYAATGSRVSFVFAGDVDSDGDADVLSLSENSE---------IITWYENDGAGNFGTPMLINPEINRGIKSVFSIDLDGDNDADVVSAFAFDDKIVWYENTDGKGTFTE 633
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Match: UPI00165541A0 (T9SS type A sorting domain-containing protein n=1 Tax=Kordia aestuariivivens TaxID=2759037 RepID=UPI00165541A0) HSP 1 Score: 164 bits (414), Expect = 1.050e-41 Identity = 112/273 (41.03%), Postives = 153/273 (56.04%), Query Frame = 1
Query: 10 RSIDVGDLDGDGFPDVVVAFQTSF-TLTWFSNLDSLGEFS----VGTDIDTYEEGDHSNFVKVADLDGDGDLDVITASKQGDRVTWYENTDGEATFALGVDISTTADGAVTLALADLDGDDDLDVVSA-SVFSGLASYENSNGASFVIAIDFRQNDSL-YCLPFSQRDVVTADIDGDGDIDIISASFDGNHTAGSFPDGRILWLEN-DGSGSFAEGRDIGL-LDSARNLVAVDLDNDGDVDLVACDGVGGSIVWYENTDGTGNF-SEVIITTD 798
+S+ D+DGDG D + SF + WF N D G + + TDID E V DLDGDGD+DV++AS +++ WYENTDG+ TF I+T A A ++ ADLDGD D+D+VS S S + +EN++G +F ++ Y F+Q V DIDGDGD+DI+SAS D +I W EN DG G+F + I DSA ++ A+DLD DGD+D+++ I WYENTDG G F ++ IITTD
Sbjct: 395 KSVYAADIDGDGDLDAISGSGGSFGNIAWFENTDGQGSYGPQKIITTDIDDAES------VFAIDLDGDGDIDVLSASYDDNKIAWYENTDGQGTFGPQQIITTGASNAESVYAADLDGDGDMDIVSTYSTISSVVWFENTDGQG-----NFGARQTITYNADFAQA-VYAEDIDGDGDMDILSASSG---------DDKIAWYENTDGQGNFGTQQVISTNADSASSVYAIDLDGDGDIDVLSASRADDKIAWYENTDGQGTFGAQQIITTD 646 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19143.6109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19143.6109.1 >prot_Ecto-sp13_S_contig19143.6109.1 ID=prot_Ecto-sp13_S_contig19143.6109.1|Name=mRNA_Ecto-sp13_S_contig19143.6109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp SQTRSIDVGDLDGDGFPDVVVAFQTSFTLTWFSNLDSLGEFSVGTDIDTYback to top mRNA from alignment at Ecto-sp13_S_contig19143:874..3339+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19143.6109.1 ID=mRNA_Ecto-sp13_S_contig19143.6109.1|Name=mRNA_Ecto-sp13_S_contig19143.6109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19143:874..3339+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19143:874..3339+ >mRNA_Ecto-sp13_S_contig19143.6109.1 ID=mRNA_Ecto-sp13_S_contig19143.6109.1|Name=mRNA_Ecto-sp13_S_contig19143.6109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19143:874..3339+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |