mRNA_Ecto-sp13_S_contig19135.6103.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19135.6103.1
Unique NamemRNA_Ecto-sp13_S_contig19135.6103.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19135.6103.1 vs. uniprot
Match: D8LDX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX6_ECTSI)

HSP 1 Score: 778 bits (2010), Expect = 2.920e-280
Identity = 417/478 (87.24%), Postives = 430/478 (89.96%), Query Frame = 1 
Query:    1 NSKVLACLGRRAKVMRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFLQGAVERAARQHLLETNMNRMAIVTRFMSQMALKRRRNRAIKIIIGALSAFTNSNAIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTALLLKPPSKASLPLSRPGTAETTPATSTXXXXXXXXXXRKGAGGQGGQKKGRTRPKRQKSIVGREKKVENDTGGGGGQGSAGATLASMVPETAESKSAAPETASQPRRPPLYVSSEAKHREIFSWLRRTRAKHCRDVINYERFTVFPCMVELLLQHERRTYGTRLQAVKHVVALRSFGRLSRVWTEGGYFAKMSHVLPPPPRMPRVFTPEEGDEMFDRAAARSRTPSFTHAATSVLEGGSEAAAVSQPGETVGGTMPSEAVLIEVEAAVAXXXXXXXAGEAAVKAVLGRGSGA 1434
            + +VL CLGRRAKVMRSRETTQLSLISTRAMANREMRTCKAERDRAFAELV+GRLFTRTGGIVRTWTAIIANIKRLLFLQGAVERAARQHLLE NMNRMAIVTRFMSQMALKRRRNRA+KIIIGALSAFTNSNAIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTA+L +PPSKASLP SRPGTAETTPATS           RKGAGGQGGQKKGRTRPKRQKS+VGREKKVENDTGGGGGQGSA ATLAS VPETA+S SA P+ A QPRRPP+YVSSEAKHREI SWL+RTRAKHCRDVINYERFT+FPCMVELLLQHERRTYGTRLQAVKHV+ALRSFGRLSRVWTEGGYFAKMSHVLPPP RMPRVFTPEEGDEM DRAAARS TPSFTHAA S LEGG EA    Q G   GGTMP EAVLIEVEAA         AGEAAVKAVLG GSGA
Sbjct:   71 HDQVLPCLGRRAKVMRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVHGRLFTRTGGIVRTWTAIIANIKRLLFLQGAVERAARQHLLEANMNRMAIVTRFMSQMALKRRRNRAVKIIIGALSAFTNSNAIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTAML-RPPSKASLPPSRPGTAETTPATSNSPSSNKRPNRRKGAGGQGGQKKGRTRPKRQKSVVGREKKVENDTGGGGGQGSARATLASTVPETADSTSAPPKNALQPRRPPVYVSSEAKHREILSWLQRTRAKHCRDVINYERFTIFPCMVELLLQHERRTYGTRLQAVKHVIALRSFGRLSRVWTEGGYFAKMSHVLPPPSRMPRVFTPEEGDEMLDRAAARSTTPSFTHAAASFLEGGPEAHGAPQSGAAAGGTMPPEAVLIEVEAAATAAAEAARAGEAAVKAVLGSGSGA 547
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BLAST of mRNA_Ecto-sp13_S_contig19135.6103.1 vs. uniprot
Match: A0A6H5L2P4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P4_9PHAE)

HSP 1 Score: 642 bits (1655), Expect = 4.210e-228
Identity = 342/432 (79.17%), Postives = 365/432 (84.49%), Query Frame = 1 
Query:   43 MRSRETTQLSLISTRAMANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFL------------------------QGAVERAARQHLLETNMNRMAIVTRFMSQMALKRRRNRAIKIIIGALSAFTNSNAIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTALLLKPPSKASLPLSRPGTAETTPATSTXXXXXXXXXXRKGAGGQGGQKKGRTRPKRQKSIVGREKKVENDTGGGGGQGSAGATLASMVPETAESKSAAPETASQPRRPPLYVSSEAKHREIFSWLRRTRAKHCRDVINYERFT---------------VFPCMVELLLQHERRTYGTRLQAVKHVVALRSFGRLSRVWTEGGYFAKMSHVLPPPPRMPRVFTPEEGDEMFDRAAAR 1221
            MRSRETTQL LIST+A+ANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFL                        QGAVERAARQHLLE NMNRMAIVTRF+ QMALKRRRNRA+KI+IGALSAFT+S+AIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTT + L+PPS+ASLP S+PGTA+TTPATST          RKGAGGQGG KKGRTRPKRQKS+VGR+K+ +ND GGGGGQGSAGAT AS VPETAES SA  ETA Q RRPP+YVSSEAKHREIFSWL+RTRAKHCRD+INYERFT               +FPCMVELLLQHERRTYGTRLQAV+HV+ LRSFGRLSRVWTEGGYFAKMSH LPPPPRMPRVFTPEEGDEMFDRAA+R
Sbjct:    1 MRSRETTQLFLISTKALANREMRTCKAERDRAFAELVYGRLFTRTGGIVRTWTAIIANIKRLLFLMPHIVHGADDNDISICLRSYDIVQQGAVERAARQHLLEANMNRMAIVTRFIGQMALKRRRNRAVKILIGALSAFTSSSAIGRYAQRVNWGTRHLQAVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTGMPLRPPSEASLPPSQPGTAKTTPATSTSPSSNKRPNRRKGAGGQGGPKKGRTRPKRQKSVVGRKKQFQNDAGGGGGQGSAGATHASTVPETAESNSAPRETAPQRRRPPVYVSSEAKHREIFSWLQRTRAKHCRDIINYERFTPFSSLELPLNLKRTKIFPCMVELLLQHERRTYGTRLQAVRHVITLRSFGRLSRVWTEGGYFAKMSHALPPPPRMPRVFTPEEGDEMFDRAASR 432
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19135.6103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDX6_ECTSI2.920e-28087.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2P4_9PHAE4.210e-22879.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19135contigEcto-sp13_S_contig19135:615..3351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1443
Hectar predicted targeting categorymitochondrion
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_003440.1
Cds size1443
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462975.1369014-CDS-Ecto-sp13_S_contig19135:614..8371681462975.1369014-CDS-Ecto-sp13_S_contig19135:614..837Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19135 615..837 -
1681462975.145574-CDS-Ecto-sp13_S_contig19135:1195..14281681462975.145574-CDS-Ecto-sp13_S_contig19135:1195..1428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19135 1196..1428 -
1681462975.1596556-CDS-Ecto-sp13_S_contig19135:1867..25641681462975.1596556-CDS-Ecto-sp13_S_contig19135:1867..2564Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19135 1868..2564 -
1681462975.1696079-CDS-Ecto-sp13_S_contig19135:2802..28551681462975.1696079-CDS-Ecto-sp13_S_contig19135:2802..2855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19135 2803..2855 -
1681462975.177683-CDS-Ecto-sp13_S_contig19135:3114..33511681462975.177683-CDS-Ecto-sp13_S_contig19135:3114..3351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19135 3115..3351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19135.6103.1prot_Ecto-sp13_S_contig19135.6103.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19135 615..3351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19135.6103.1

>prot_Ecto-sp13_S_contig19135.6103.1 ID=prot_Ecto-sp13_S_contig19135.6103.1|Name=mRNA_Ecto-sp13_S_contig19135.6103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=481bp
NSKVLACLGRRAKVMRSRETTQLSLISTRAMANREMRTCKAERDRAFAEL
VYGRLFTRTGGIVRTWTAIIANIKRLLFLQGAVERAARQHLLETNMNRMA
IVTRFMSQMALKRRRNRAIKIIIGALSAFTNSNAIGRYAQRVNWGTRHLQ
AVVRRRMACMTSHLTLLNRHWDRLYPPVPLPLMTTALLLKPPSKASLPLS
RPGTAETTPATSTSTSSNKRPNRRKGAGGQGGQKKGRTRPKRQKSIVGRE
KKVENDTGGGGGQGSAGATLASMVPETAESKSAAPETASQPRRPPLYVSS
EAKHREIFSWLRRTRAKHCRDVINYERFTVFPCMVELLLQHERRTYGTRL
QAVKHVVALRSFGRLSRVWTEGGYFAKMSHVLPPPPRMPRVFTPEEGDEM
FDRAAARSRTPSFTHAATSVLEGGSEAAAVSQPGETVGGTMPSEAVLIEV
EAAVAAAAAAATAGEAAVKAVLGRGSGAEL*
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mRNA from alignment at Ecto-sp13_S_contig19135:615..3351-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19135.6103.1 ID=mRNA_Ecto-sp13_S_contig19135.6103.1|Name=mRNA_Ecto-sp13_S_contig19135.6103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2737bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19135:615..3351- (Ectocarpus species13 EcNAP12_S_4_19m)
AATTCAAAGGTACTTGCTTGCTTGGGCAGGCGGGCGAAAGTCATGCGCTC
TCGGGAGACCACACAACTGTCCCTCATCTCAACGAGGGCTATGGCCAACC
GAGAGATGCGCACTTGCAAGGCGGAACGGGATCGCGCTTTTGCTGAGCTT
GTGTACGGAAGGTTATTTACCCGCACAGGTGGGATCGTTCGCACCTGGAC
GGCTATCATCGCCAACATCAAGCGCCTCTTGTTCTTGGTGAGTTCTGTGC
AGGACAAAAATTCACGTCACGTACGCGTTACTCATTATTTTTCTCGACTC
TGCACTCTCTCCTTCGAAAAAACCTCAGAACTCAGTGTTTTCCGGACAAA
GGTTTGTTACGTGCGCTATTCCCGAGGTCATTATGGCCACTATTCCCAAC
TGAAGGCCACACACGATGAGAAATTGCCACATATTGTGCATGGTGCGGAC
GATAACAATATCTCCATTTGCCTGCGATCGTACGGTATTGTTTCAGCAAG
GAGCGGTGGAGAGGGCCGCCCGTCAACATCTGTTGGAAACGAACATGAAG
TGAGACAAGTTCCAAGTTCGAACGGGGATCATCTACTTTCATATCTGTCA
TCGGCCAAAGCAGAGTCACATTAGTGTGCAAATGGATTAGGGCGGTTTGG
AACATCATCAGGGTATCGAGACATGTCAGGAAACGTTACTCCAGACGAAC
TCTCCTGAATCGCTTTCACATCCTTGTTTGTCCGGTGGATGCGCTTCATG
CCCCGTTCTGTTTCCCCTTTCTTCCGGCGCCACACAGCCGCATGGCCATC
GTTACAAGGTTCATGAGCCAGATGGCCCTCAAGCGTCGGCGCAATAGAGC
GATTAAGATTATCATCGGGGCTCTGAGCGCGTTTACCAACTCGAACGCCA
TCGGCCGCTACGCACAACGGGTCAATTGGGGTACTCGACACCTCCAGGCC
GTAGTGAGACGGCGCATGGCCTGCATGACGTCTCACCTCACACTTCTCAA
TCGGCACTGGGACCGCCTGTACCCTCCTGTTCCTTTGCCGCTGATGACAA
CGGCGTTGCTGCTAAAACCGCCATCCAAAGCGTCGCTGCCCCTGTCACGA
CCTGGAACAGCAGAAACGACCCCGGCAACATCAACTTCGACGAGCAGCAA
TAAACGCCCGAATCGGCGAAAAGGCGCCGGGGGGCAGGGGGGGCAAAAGA
AAGGAAGAACCCGTCCAAAGCGCCAGAAGAGCATCGTCGGTCGAGAAAAG
AAGGTCGAAAATGATACTGGTGGTGGTGGTGGCCAGGGTTCCGCAGGTGC
AACACTTGCGTCGATGGTGCCAGAGACGGCTGAAAGCAAAAGTGCGGCCC
CCGAGACGGCGTCGCAACCCAGGAGGCCCCCTCTGTACGTCTCGAGCGAG
GCGAAGCACAGAGAGATATTTTCATGGCTGCGGAGGACGAGGGCAAAGCA
TTGCAGGGACGTCATCAACTACGAGCGTTTCACGGTACGACCCCTGGCGG
AAGCTTGAGTCACCTGGTCTCCCACCGGCAATGGTTCCCTAGGTCTGGTA
GTGCCCAACCGCGACAACGTGGGCAAGACATATCGGAAACACATGTCCCC
GACAATGTGCGGCGCGCTCTTGCGGGTGTTCGATGTCCTCCAGCACGAAT
TGAGTGTTTCGGGAGCGTCGAAGGAGGCTTTATTTTGACTCTCGCTCGTC
TCTGTCAATCAGACTCTACACCAAGGATCCCATTCGATCTCGCCGAGCGT
TGAGAATCTCTTGAATAATTTCATGTTATTTGGCGTCTATCGAACTTTCG
ACCCGGAACGAACAACATATACACGACTTACAGACAAGATGGTGCCCCTG
AACCACTAAGTGTTGGCGCGACTAACAGCCTTGTTCTCCCCTCGAACTTC
CACTGAATCTGAAATGCACCAAGGTATTCCCATGTATGGTGGAGCTGCTG
CTGCAGCACGAGCGAAGGACGTATGGCACCCGCCTACAAGCCGTCAAGCA
CGTCGTCGCTCTCCGAAGCTTTGGGCGCCTATCTCGAGTCTGGACGGAAG
GCGGGTACTTCGCCAAGATGTCGCACGTCCTGCCCCCCCCGCCTCGTATG
CCGAGGGTGTTCACGCCGGAGGAGGGTGACGAGATGTTCGACCGCGCGGC
CGCCAGGTATTGCTGCTGTCGGCGGAGTAGGCGTCGGCACAAGTGTTTTC
CAAATCACGTAGAAGGTGGAAACTAGTGCCTCACGCGTAGGATAAGGAAC
GTGGGAATAGAAAGTGCTTTACAGGCGATGTCATATCCGCGGCTGAGGAA
AGTCCAACGTCTACATTCGGCAAAAAAGAGGGAGGTTCATGTTTTCGTCT
GGGGCTGGCTTGGACGGAAGGAGAGCGGTGAACCAGCATGGCTTCGGTTT
GGCGACAGAGCACACAGTGGAGAGCATGCAAGTGCCAAAAGATAAGGCAG
TCCGGTTGTTGACTGGACCCATCAACGAGACGACCATGCACGTGCACCGC
CTCTTCTGTTTCAGATCAAGGACACCGTCGTTTACACATGCTGCTACGAG
TGTCCTCGAAGGAGGGTCTGAGGCCGCCGCAGTCTCACAGCCAGGAGAAA
CTGTTGGCGGCACAATGCCGTCGGAAGCGGTATTGATAGAGGTGGAAGCC
GCGGTAGCTGCGGCGGCAGCAGCGGCAACAGCAGGGGAAGCGGCCGTGAA
AGCCGTCTTGGGGAGGGGGAGCGGAGCAGAGCTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19135:615..3351-

>mRNA_Ecto-sp13_S_contig19135.6103.1 ID=mRNA_Ecto-sp13_S_contig19135.6103.1|Name=mRNA_Ecto-sp13_S_contig19135.6103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1443bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19135:615..3351- (Ectocarpus species13 EcNAP12_S_4_19m)
AATTCAAAGGTACTTGCTTGCTTGGGCAGGCGGGCGAAAGTCATGCGCTC
TCGGGAGACCACACAACTGTCCCTCATCTCAACGAGGGCTATGGCCAACC
GAGAGATGCGCACTTGCAAGGCGGAACGGGATCGCGCTTTTGCTGAGCTT
GTGTACGGAAGGTTATTTACCCGCACAGGTGGGATCGTTCGCACCTGGAC
GGCTATCATCGCCAACATCAAGCGCCTCTTGTTCTTGCAAGGAGCGGTGG
AGAGGGCCGCCCGTCAACATCTGTTGGAAACGAACATGAACCGCATGGCC
ATCGTTACAAGGTTCATGAGCCAGATGGCCCTCAAGCGTCGGCGCAATAG
AGCGATTAAGATTATCATCGGGGCTCTGAGCGCGTTTACCAACTCGAACG
CCATCGGCCGCTACGCACAACGGGTCAATTGGGGTACTCGACACCTCCAG
GCCGTAGTGAGACGGCGCATGGCCTGCATGACGTCTCACCTCACACTTCT
CAATCGGCACTGGGACCGCCTGTACCCTCCTGTTCCTTTGCCGCTGATGA
CAACGGCGTTGCTGCTAAAACCGCCATCCAAAGCGTCGCTGCCCCTGTCA
CGACCTGGAACAGCAGAAACGACCCCGGCAACATCAACTTCGACGAGCAG
CAATAAACGCCCGAATCGGCGAAAAGGCGCCGGGGGGCAGGGGGGGCAAA
AGAAAGGAAGAACCCGTCCAAAGCGCCAGAAGAGCATCGTCGGTCGAGAA
AAGAAGGTCGAAAATGATACTGGTGGTGGTGGTGGCCAGGGTTCCGCAGG
TGCAACACTTGCGTCGATGGTGCCAGAGACGGCTGAAAGCAAAAGTGCGG
CCCCCGAGACGGCGTCGCAACCCAGGAGGCCCCCTCTGTACGTCTCGAGC
GAGGCGAAGCACAGAGAGATATTTTCATGGCTGCGGAGGACGAGGGCAAA
GCATTGCAGGGACGTCATCAACTACGAGCGTTTCACGGTATTCCCATGTA
TGGTGGAGCTGCTGCTGCAGCACGAGCGAAGGACGTATGGCACCCGCCTA
CAAGCCGTCAAGCACGTCGTCGCTCTCCGAAGCTTTGGGCGCCTATCTCG
AGTCTGGACGGAAGGCGGGTACTTCGCCAAGATGTCGCACGTCCTGCCCC
CCCCGCCTCGTATGCCGAGGGTGTTCACGCCGGAGGAGGGTGACGAGATG
TTCGACCGCGCGGCCGCCAGATCAAGGACACCGTCGTTTACACATGCTGC
TACGAGTGTCCTCGAAGGAGGGTCTGAGGCCGCCGCAGTCTCACAGCCAG
GAGAAACTGTTGGCGGCACAATGCCGTCGGAAGCGGTATTGATAGAGGTG
GAAGCCGCGGTAGCTGCGGCGGCAGCAGCGGCAACAGCAGGGGAAGCGGC
CGTGAAAGCCGTCTTGGGGAGGGGGAGCGGAGCAGAGCTGTAG
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