mRNA_Ecto-sp13_S_contig19125.6097.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A6H5KW94_9PHAE (HELICc2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW94_9PHAE) HSP 1 Score: 259 bits (661), Expect = 7.940e-79 Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 1
Query: 10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCNGKAWARITAHKQPMIEPRTAA 393
VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCV RWKHF NGKAWARI AHK+PMIEPRTAA
Sbjct: 9 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVHRWKHFSNGKAWARIMAHKEPMIEPRTAA 136
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: D8LG74_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG74_ECTSI) HSP 1 Score: 168 bits (426), Expect = 5.260e-47 Identity = 90/121 (74.38%), Postives = 91/121 (75.21%), Query Frame = 1
Query: 10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ------------------------------AWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFST 282
VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ AWIGTLGRGPTSVTLNSSYANRDND+YKDELGATLANLCRIVPGGVLVFFST
Sbjct: 452 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQTPLAGLLQAMSPRSSAWWPVGPSETKGKAKAWIGTLGRGPTSVTLNSSYANRDNDNYKDELGATLANLCRIVPGGVLVFFST 572
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A2K3L1N8_TRIPR (Regulator of telomere elongation helicase 1-like protein (Fragment) n=5 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L1N8_TRIPR) HSP 1 Score: 144 bits (363), Expect = 3.110e-40 Identity = 70/128 (54.69%), Postives = 85/128 (66.41%), Query Frame = 1
Query: 10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCNGKA---WARITAHKQPMIEPR 384
VRSII+TSGTLSPL SF EL+L F +++ENPHVIGP Q W G + GP+ T NSSY NRD YK ELG + NL RIVP G+LVFF +Y + + WK N + W RI HK+P+IEPR
Sbjct: 26 VRSIILTSGTLSPLDSFAEELKLDFPIRLENPHVIGPNQIWAGVVPVGPSGRTFNSSYRNRDTMEYKQELGNAIVNLARIVPDGLLVFFPSYYLLEQSIACWKSLSNESSASIWERICNHKKPVIEPR 153
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A1Y1HMY1_KLENI (Helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HMY1_KLENI) HSP 1 Score: 152 bits (383), Expect = 4.230e-40 Identity = 70/131 (53.44%), Postives = 91/131 (69.47%), Query Frame = 1
Query: 10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCNGKA---WARITAHKQPMIEPRTAA 393
VRS++VTSGTL+PL SF +EL+LPF++++ENPHVI P Q W G + GP+ LNSSY RD+ YK ELG + N RIVP G+LVFF +Y + C++ W+ G A W RIT HKQP++EPR AA
Sbjct: 475 VRSVVVTSGTLAPLESFAHELKLPFQIRLENPHVIQPRQVWAGVVPVGPSGKALNSSYRTRDSPEYKSELGNAIVNFARIVPNGLLVFFPSYHLLTSCLEFWQTPAPGAATTIWERITRHKQPVVEPREAA 605
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A835YDW4_9CHLO (DNA helicase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YDW4_9CHLO) HSP 1 Score: 152 bits (383), Expect = 4.280e-40 Identity = 67/133 (50.38%), Postives = 94/133 (70.68%), Query Frame = 1
Query: 7 KVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCN----GKAWARITAHKQPMIEPRTAA 393
+VRS ++TSGT+SP+ +F EL++PF V++ENPHVIGP Q W+G L GP+ V LNS++ +RD+ +YKDELG L N+ R+VP G+LVFF++Y M+ + WK G W RIT HK P++EPR +A
Sbjct: 520 RVRSFLLTSGTISPMETFAAELQMPFPVRLENPHVIGPSQVWVGVLPTGPSGVALNSTFQSRDSTAYKDELGNALVNVARLVPDGLLVFFASYAAMDSAISHWKQNGGAGGAGSTWERITRHKAPVVEPRESA 652
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: D8TJ59_VOLCA (DNA helicase (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TJ59_VOLCA) HSP 1 Score: 149 bits (377), Expect = 1.580e-39 Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 1
Query: 7 KVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCN----GKAWARITAHKQPMIEPR 384
++RS ++TSGTLSP+ SF EL++PF+V++ENPHVI P Q W+G L GP+ LNS+YA+RD+ +YKDELG L N+ R+VP G+LVFF++Y M+ + WK G W RI HK P++EPR
Sbjct: 406 RLRSFLLTSGTLSPMDSFAGELQIPFQVRLENPHVIEPSQVWVGVLPTGPSGAPLNSTYASRDSATYKDELGNALVNVARLVPDGLLVFFASYAAMDSAINHWKQNGGAGGVGSTWERIVRHKAPVVEPR 535
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: D8RJV6_SELML (DNA helicase (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RJV6_SELML) HSP 1 Score: 149 bits (377), Expect = 2.220e-39 Identity = 70/131 (53.44%), Postives = 93/131 (70.99%), Query Frame = 1
Query: 10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWK--HFCNGKA-WARITAHKQPMIEPRTAA 393
VR+I++TSGTLSPL SF EL+LPF+V++ENPHVIG Q W+G + GP+ LNSSY RD+ YK++LG T+ N RIVP G+LVFF +Y +N CV W+ + NG W RI HKQP++EP+ +A
Sbjct: 428 VRTIVLTSGTLSPLESFAIELKLPFDVRLENPHVIGANQIWVGVVSSGPSGRALNSSYRTRDSPEYKNDLGNTIVNFARIVPDGLLVFFPSYYLLNSCVDSWQTPNQVNGHTLWERICKHKQPVVEPKESA 558
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A383WD75_TETOB (DNA helicase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WD75_TETOB) HSP 1 Score: 149 bits (377), Expect = 2.740e-39 Identity = 68/129 (52.71%), Postives = 88/129 (68.22%), Query Frame = 1
Query: 10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCNG----KAWARITAHKQPMIEPR 384
+RS+++TSGTLSPL SF +EL+L F+ +ENPHVI +Q W+G +G GPT VTLNSS+ANR++D YKDELG + N R+VP G+LVFF Y M C+ WK W RI HK P++EPR
Sbjct: 506 LRSVLLTSGTLSPLESFAHELQLGFKYTLENPHVINNDQVWVGVIGSGPTGVTLNSSFANRNSDRYKDELGHAIVNFARVVPDGLLVFFPAYGVMQSCLDHWKASSGPGGGPSIWERILRHKAPVVEPR 634
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A835SXW5_CHLIN (DNA helicase n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SXW5_CHLIN) HSP 1 Score: 149 bits (377), Expect = 2.750e-39 Identity = 66/133 (49.62%), Postives = 92/133 (69.17%), Query Frame = 1
Query: 7 KVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCN----GKAWARITAHKQPMIEPRTAA 393
++RS ++TSGTLSP+ SF EL++PF V++ENPH+I P Q W+G L GP+ LNS+YA+RD+ +YKDELG L N+ R+VP G+LVFF++Y M+ + WK G W RI HK P++EPR +A
Sbjct: 544 RLRSFLLTSGTLSPMDSFAGELQIPFPVRLENPHIIAPSQVWVGVLPVGPSGAALNSTYASRDSTAYKDELGNALVNVARVVPDGLLVFFASYAAMDSAIGHWKQNGGAGGVGSTWERIVRHKAPVVEPRESA 676
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A061SHN2_9CHLO (Regulator of telomere elongation helicase 1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SHN2_9CHLO) HSP 1 Score: 143 bits (360), Expect = 3.570e-39 Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1
Query: 10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKH-FCNGKA-WARITAHKQPMIEPRTAA 393
+RSI++TSGTLSPL SF EL LPF V++ENPHVI P Q +IG + +GP ++LNSS+ RD+ YK +LG + N R P G+LVFF +YR + C+Q WK+ F +G + W RI HK +IEPR++A
Sbjct: 46 IRSILLTSGTLSPLDSFAYELCLPFPVRLENPHVIDPRQVYIGVVSKGPAGISLNSSFQKRDSPEYKSDLGNLIVNFARTTPDGLLVFFPSYRVLEGCLQHWKNEFTSGSSIWDRIVQHKWAVIEPRSSA 175 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19125.6097.1 >prot_Ecto-sp13_S_contig19125.6097.1 ID=prot_Ecto-sp13_S_contig19125.6097.1|Name=mRNA_Ecto-sp13_S_contig19125.6097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp DGKVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRback to top mRNA from alignment at Ecto-sp13_S_contig19125:825..2357- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19125.6097.1 ID=mRNA_Ecto-sp13_S_contig19125.6097.1|Name=mRNA_Ecto-sp13_S_contig19125.6097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1533bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19125:825..2357- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19125:825..2357- >mRNA_Ecto-sp13_S_contig19125.6097.1 ID=mRNA_Ecto-sp13_S_contig19125.6097.1|Name=mRNA_Ecto-sp13_S_contig19125.6097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19125:825..2357- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |