mRNA_Ecto-sp13_S_contig19125.6097.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19125.6097.1
Unique NamemRNA_Ecto-sp13_S_contig19125.6097.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A6H5KW94_9PHAE (HELICc2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW94_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 7.940e-79
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 1
Query:   10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCNGKAWARITAHKQPMIEPRTAA 393
            VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCV RWKHF NGKAWARI AHK+PMIEPRTAA
Sbjct:    9 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVHRWKHFSNGKAWARIMAHKEPMIEPRTAA 136          
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: D8LG74_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG74_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 5.260e-47
Identity = 90/121 (74.38%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ------------------------------AWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFST 282
            VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ                              AWIGTLGRGPTSVTLNSSYANRDND+YKDELGATLANLCRIVPGGVLVFFST
Sbjct:  452 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQTPLAGLLQAMSPRSSAWWPVGPSETKGKAKAWIGTLGRGPTSVTLNSSYANRDNDNYKDELGATLANLCRIVPGGVLVFFST 572          
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A2K3L1N8_TRIPR (Regulator of telomere elongation helicase 1-like protein (Fragment) n=5 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L1N8_TRIPR)

HSP 1 Score: 144 bits (363), Expect = 3.110e-40
Identity = 70/128 (54.69%), Postives = 85/128 (66.41%), Query Frame = 1
Query:   10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCNGKA---WARITAHKQPMIEPR 384
            VRSII+TSGTLSPL SF  EL+L F +++ENPHVIGP Q W G +  GP+  T NSSY NRD   YK ELG  + NL RIVP G+LVFF +Y  +   +  WK   N  +   W RI  HK+P+IEPR
Sbjct:   26 VRSIILTSGTLSPLDSFAEELKLDFPIRLENPHVIGPNQIWAGVVPVGPSGRTFNSSYRNRDTMEYKQELGNAIVNLARIVPDGLLVFFPSYYLLEQSIACWKSLSNESSASIWERICNHKKPVIEPR 153          
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A1Y1HMY1_KLENI (Helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HMY1_KLENI)

HSP 1 Score: 152 bits (383), Expect = 4.230e-40
Identity = 70/131 (53.44%), Postives = 91/131 (69.47%), Query Frame = 1
Query:   10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCNGKA---WARITAHKQPMIEPRTAA 393
            VRS++VTSGTL+PL SF +EL+LPF++++ENPHVI P Q W G +  GP+   LNSSY  RD+  YK ELG  + N  RIVP G+LVFF +Y  +  C++ W+    G A   W RIT HKQP++EPR AA
Sbjct:  475 VRSVVVTSGTLAPLESFAHELKLPFQIRLENPHVIQPRQVWAGVVPVGPSGKALNSSYRTRDSPEYKSELGNAIVNFARIVPNGLLVFFPSYHLLTSCLEFWQTPAPGAATTIWERITRHKQPVVEPREAA 605          
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A835YDW4_9CHLO (DNA helicase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YDW4_9CHLO)

HSP 1 Score: 152 bits (383), Expect = 4.280e-40
Identity = 67/133 (50.38%), Postives = 94/133 (70.68%), Query Frame = 1
Query:    7 KVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCN----GKAWARITAHKQPMIEPRTAA 393
            +VRS ++TSGT+SP+ +F  EL++PF V++ENPHVIGP Q W+G L  GP+ V LNS++ +RD+ +YKDELG  L N+ R+VP G+LVFF++Y  M+  +  WK        G  W RIT HK P++EPR +A
Sbjct:  520 RVRSFLLTSGTISPMETFAAELQMPFPVRLENPHVIGPSQVWVGVLPTGPSGVALNSTFQSRDSTAYKDELGNALVNVARLVPDGLLVFFASYAAMDSAISHWKQNGGAGGAGSTWERITRHKAPVVEPRESA 652          
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: D8TJ59_VOLCA (DNA helicase (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TJ59_VOLCA)

HSP 1 Score: 149 bits (377), Expect = 1.580e-39
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 1
Query:    7 KVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCN----GKAWARITAHKQPMIEPR 384
            ++RS ++TSGTLSP+ SF  EL++PF+V++ENPHVI P Q W+G L  GP+   LNS+YA+RD+ +YKDELG  L N+ R+VP G+LVFF++Y  M+  +  WK        G  W RI  HK P++EPR
Sbjct:  406 RLRSFLLTSGTLSPMDSFAGELQIPFQVRLENPHVIEPSQVWVGVLPTGPSGAPLNSTYASRDSATYKDELGNALVNVARLVPDGLLVFFASYAAMDSAINHWKQNGGAGGVGSTWERIVRHKAPVVEPR 535          
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: D8RJV6_SELML (DNA helicase (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RJV6_SELML)

HSP 1 Score: 149 bits (377), Expect = 2.220e-39
Identity = 70/131 (53.44%), Postives = 93/131 (70.99%), Query Frame = 1
Query:   10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWK--HFCNGKA-WARITAHKQPMIEPRTAA 393
            VR+I++TSGTLSPL SF  EL+LPF+V++ENPHVIG  Q W+G +  GP+   LNSSY  RD+  YK++LG T+ N  RIVP G+LVFF +Y  +N CV  W+  +  NG   W RI  HKQP++EP+ +A
Sbjct:  428 VRTIVLTSGTLSPLESFAIELKLPFDVRLENPHVIGANQIWVGVVSSGPSGRALNSSYRTRDSPEYKNDLGNTIVNFARIVPDGLLVFFPSYYLLNSCVDSWQTPNQVNGHTLWERICKHKQPVVEPKESA 558          
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A383WD75_TETOB (DNA helicase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WD75_TETOB)

HSP 1 Score: 149 bits (377), Expect = 2.740e-39
Identity = 68/129 (52.71%), Postives = 88/129 (68.22%), Query Frame = 1
Query:   10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCNG----KAWARITAHKQPMIEPR 384
            +RS+++TSGTLSPL SF +EL+L F+  +ENPHVI  +Q W+G +G GPT VTLNSS+ANR++D YKDELG  + N  R+VP G+LVFF  Y  M  C+  WK           W RI  HK P++EPR
Sbjct:  506 LRSVLLTSGTLSPLESFAHELQLGFKYTLENPHVINNDQVWVGVIGSGPTGVTLNSSFANRNSDRYKDELGHAIVNFARVVPDGLLVFFPAYGVMQSCLDHWKASSGPGGGPSIWERILRHKAPVVEPR 634          
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A835SXW5_CHLIN (DNA helicase n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SXW5_CHLIN)

HSP 1 Score: 149 bits (377), Expect = 2.750e-39
Identity = 66/133 (49.62%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    7 KVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKHFCN----GKAWARITAHKQPMIEPRTAA 393
            ++RS ++TSGTLSP+ SF  EL++PF V++ENPH+I P Q W+G L  GP+   LNS+YA+RD+ +YKDELG  L N+ R+VP G+LVFF++Y  M+  +  WK        G  W RI  HK P++EPR +A
Sbjct:  544 RLRSFLLTSGTLSPMDSFAGELQIPFPVRLENPHIIAPSQVWVGVLPVGPSGAALNSTYASRDSTAYKDELGNALVNVARVVPDGLLVFFASYAAMDSAIGHWKQNGGAGGVGSTWERIVRHKAPVVEPRESA 676          
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Match: A0A061SHN2_9CHLO (Regulator of telomere elongation helicase 1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SHN2_9CHLO)

HSP 1 Score: 143 bits (360), Expect = 3.570e-39
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   10 VRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVQRWKH-FCNGKA-WARITAHKQPMIEPRTAA 393
            +RSI++TSGTLSPL SF  EL LPF V++ENPHVI P Q +IG + +GP  ++LNSS+  RD+  YK +LG  + N  R  P G+LVFF +YR +  C+Q WK+ F +G + W RI  HK  +IEPR++A
Sbjct:   46 IRSILLTSGTLSPLDSFAYELCLPFPVRLENPHVIDPRQVYIGVVSKGPAGISLNSSFQKRDSPEYKSDLGNLIVNFARTTPDGLLVFFPSYRVLEGCLQHWKNEFTSGSSIWDRIVQHKWAVIEPRSSA 175          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19125.6097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW94_9PHAE7.940e-7996.88HELICc2 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LG74_ECTSI5.260e-4774.38Helicase ATP-binding domain-containing protein n=1... [more]
A0A2K3L1N8_TRIPR3.110e-4054.69Regulator of telomere elongation helicase 1-like p... [more]
A0A1Y1HMY1_KLENI4.230e-4053.44Helicase n=1 Tax=Klebsormidium nitens TaxID=105231... [more]
A0A835YDW4_9CHLO4.280e-4050.38DNA helicase n=1 Tax=Edaphochlamys debaryana TaxID... [more]
D8TJ59_VOLCA1.580e-3950.77DNA helicase (Fragment) n=1 Tax=Volvox carteri f. ... [more]
D8RJV6_SELML2.220e-3953.44DNA helicase (Fragment) n=4 Tax=Selaginella moelle... [more]
A0A383WD75_TETOB2.740e-3952.71DNA helicase n=1 Tax=Tetradesmus obliquus TaxID=30... [more]
A0A835SXW5_CHLIN2.750e-3949.62DNA helicase n=1 Tax=Chlamydomonas incerta TaxID=5... [more]
A0A061SHN2_9CHLO3.570e-3951.54Regulator of telomere elongation helicase 1 (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19125contigEcto-sp13_S_contig19125:825..2357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score169.9
Seed ortholog evalue8.1e-40
Seed eggNOG ortholog2880.D8LG74
Model size393
KEGG koko:K11136
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
Cds size393
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462974.7220364-CDS-Ecto-sp13_S_contig19125:824..9361681462974.7220364-CDS-Ecto-sp13_S_contig19125:824..936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19125 825..936 -
1681462974.7349923-CDS-Ecto-sp13_S_contig19125:1511..16661681462974.7349923-CDS-Ecto-sp13_S_contig19125:1511..1666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19125 1512..1666 -
1681462974.743925-CDS-Ecto-sp13_S_contig19125:2231..23571681462974.743925-CDS-Ecto-sp13_S_contig19125:2231..2357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19125 2232..2357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19125.6097.1prot_Ecto-sp13_S_contig19125.6097.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19125 825..2357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19125.6097.1

>prot_Ecto-sp13_S_contig19125.6097.1 ID=prot_Ecto-sp13_S_contig19125.6097.1|Name=mRNA_Ecto-sp13_S_contig19125.6097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
DGKVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQAWIGTLGR
GPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMND
CVQRWKHFCNGKAWARITAHKQPMIEPRTAA
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mRNA from alignment at Ecto-sp13_S_contig19125:825..2357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19125.6097.1 ID=mRNA_Ecto-sp13_S_contig19125.6097.1|Name=mRNA_Ecto-sp13_S_contig19125.6097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1533bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19125:825..2357- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGGAAGGTGCGTAGCATCATCGTGACGAGCGGGACTCTAAGCCCCCT TTCTTCCTTCGGGAACGAGTTGCGACTGCCCTTCGAGGTGCAGGTCGAAA ACCCGCACGTTATTGGTCCCGAACAGGTACAGTACATAGGAAATATGGCT TTGATTGCCGTGGTTATATCTCCAACGAGCGCAGTGTTTCATTGATTGTT TGTGCTCATGTATTGACTCGAAGGGATACAGTCTTTCTTTGATCGTATGT ATTTTTTCAAAGAAATACAACGTGAGTATGCAATTGATGGTGTAAGTGCG CTGCGCACGTCTATGTGTCCTGGCCGGTGCCGGCGATTAAGAACTCCTCT GGCAAGACTCCTGCAAGCCATGAGTCCTCGGCGTTCCGCCTGGTGGCCGG TCGGTCTTTCTGAGGCGAAGGGGAAGGTGAAGGTTTGTACGTGGAACCTC ACACATGGACACATACCTGGTCCATCGCTATGATACCTTGTTGCAGCGAA TTCTCCTTCGAAAACCTTTGCGTCAGAGCATGTACTCCAAACCAGTGCAT TAACCCTGTGTGCGGCTGGGACAATCATACCTTTGACCTTATCGCGTGCA CATCGGCCCACAAAAAAATCTCCCCCCCCCCCCCTCCCCCGCCCACCACC AACTATGCGGACCGCCCTCGCTTTCTCCACTTCCGCTGCAGGCGTGGATC GGAACCCTAGGCAGGGGACCGACGAGCGTGACCCTGAACAGCTCCTACGC CAACAGAGACAATGACAGCTACAAGGACGAGCTGGGGGCGACGCTGGCGA ACCTTTGCCGCATCGTGCCAGGGGGCGTTCTGGTCTTCTTTTCCACGTGA GAAGAAAGAAGAAGAACGATGATCGATGTGTGGTGGTGGTGGTGATGATG ATGATGGCGTTTTGCTTACGGGGTGGAGGGAAACGCGCCCGAGGGGGGGG GGGGGGGGGGGTGAGCGAGGAAAAAAAAAAAAAAAGAAGAAAAAAAGGAG CTTTTTGAGTAAAGGGTTTTTGTTAAAACATGCTGNNNNNNNNNNAAAAA AGAGTTGTGTGTTTGGGGGGGGGGGGGGGGGGGGAGGGGTTGGTGTTTTG GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTT GACCGAGGTAATATACAAAATACGGAGTAATAGAGGAGCTTGCTTAGTAC CAGTGGTTTGGTATCAAAGCCTGAGGCCACACGTGAGTCCCAACCCCCCA GAGGCGTTGTGCTGTTAGTATGTCTCAATTGCGAGAGGATTATCATGTCT CAATTACGAGAGGAGAGTAGGAACAGCAACGCTCCGCCTCCAGAACGATA CGTGGTCAAGGACCGCTTGACTCATCCTTATGTGGCTACGCCCCCGCCGA CCGCCGTTGTCGACTTTTAAGGTATCGCACGATGAACGACTGCGTTCAGC GGTGGAAGCACTTCTGCAACGGCAAGGCCTGGGCCAGAATAACGGCGCAC AAGCAACCCATGATAGAGCCTCGCACCGCCGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19125:825..2357-

>mRNA_Ecto-sp13_S_contig19125.6097.1 ID=mRNA_Ecto-sp13_S_contig19125.6097.1|Name=mRNA_Ecto-sp13_S_contig19125.6097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19125:825..2357- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGGAAGGTGCGTAGCATCATCGTGACGAGCGGGACTCTAAGCCCCCT
TTCTTCCTTCGGGAACGAGTTGCGACTGCCCTTCGAGGTGCAGGTCGAAA
ACCCGCACGTTATTGGTCCCGAACAGGCGTGGATCGGAACCCTAGGCAGG
GGACCGACGAGCGTGACCCTGAACAGCTCCTACGCCAACAGAGACAATGA
CAGCTACAAGGACGAGCTGGGGGCGACGCTGGCGAACCTTTGCCGCATCG
TGCCAGGGGGCGTTCTGGTCTTCTTTTCCACGTATCGCACGATGAACGAC
TGCGTTCAGCGGTGGAAGCACTTCTGCAACGGCAAGGCCTGGGCCAGAAT
AACGGCGCACAAGCAACCCATGATAGAGCCTCGCACCGCCGCA
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