mRNA_Ecto-sp13_S_contig19116.6091.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19116.6091.1 vs. uniprot
Match: A0A6H5JEL8_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL8_9PHAE) HSP 1 Score: 341 bits (875), Expect = 4.690e-107 Identity = 266/386 (68.91%), Postives = 282/386 (73.06%), Query Frame = 1
Query: 55 MKAWPKVTLWSRRSSKSSKSKTPSSEEPAQAEEIPVQVAHNNTILFVDGREGRYNFSRFGQTLAYGNQEKEEEKTTVDSSHRAYGAKELVSEEECRGEDCPNVRLLRKQELLRKSDQEELQKLRATLLQQKHDLQRNEKVASVRLKAVEDEKDALEVALGAETANTATQQKAMYTLRGENIEAQSVEMELRNQVETLKKEKSQAEKELDATLLQLKYDLERSEKVAVARLKEVEDEKDALEVALGAERANSAMQQKTIDCMKNTLREKTIEAQLLESELGEQVETLKKEKSKAAENGKRQTKEEKIRNGLARLVEKDLRKQVATLEQSIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQQADEIRNLLAQLQ 1212
MK K+TLWSRRSSKSSKSK P S EPAQA+E PVQVAHN TILFVDGREG NFSRFGQTLAY NQE+EEEKTTVDSSHRAYGAKE VS+EECRGE+CPNVRLLRKQELLRKSDQEE+QKLRATLLQQK+DLQRNEK+A +ARLK VEDEK ALEVALGAERAN+AMQQ T++ MKNTLREKTIEAQLLESELGEQVE LKKEKSKAAENG+RQTK+EKIR+GLARLVEKDLR QVATLEQSI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQQADEIRNLLAQ+Q
Sbjct: 1 MKTLHKLTLWSRRSSKSSKSKIPPSVEPAQADETPVQVAHN-TILFVDGREGSNNFSRFGQTLAYRNQEEEEEKTTVDSSHRAYGAKEFVSDEECRGEECPNVRLLRKQELLRKSDQEEIQKLRATLLQQKYDLQRNEKMA-------------------------------------------------------------------------------------LARLKAVEDEKAALEVALGAERANTAMQQITMNNMKNTLREKTIEAQLLESELGEQVEMLKKEKSKAAENGQRQTKQEKIRSGLARLVEKDLRTQVATLEQSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQQADEIRNLLAQVQ 300
BLAST of mRNA_Ecto-sp13_S_contig19116.6091.1 vs. uniprot
Match: A0A6H5JCZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCZ5_9PHAE) HSP 1 Score: 332 bits (852), Expect = 1.760e-100 Identity = 200/256 (78.12%), Postives = 215/256 (83.98%), Query Frame = 1
Query: 55 MKAWPKVTLWSRRSSKSSKSKTPSSEEPAQAEEIPVQVAHNNTILFVDGREGRYN-FSRFGQTLAYGNQEKEEEKTTVDSSHRAYGAKELVSEEECRGEDCPNVRLLRKQELLRKSDQEELQKLRATLLQQKHDLQRNEKVASVRLKAVEDEKDALEVALGAETANTATQQKAMYTLRGENIEAQSVEMELRNQVETLKKEKSQAEKELDATLLQLKYDLERSEKVAVARLKEVEDEKDALEVALGAERANSAMQQ 819
MKAW KVT WS RSSKSSKSKT SEEPAQAEE PVQVA N L V G E N FSRFGQT AYGN E EEKTTVD S+ AYGAKE VSEEECRGE+CPNVRL RK+E LR DQEE+QKLRATLLQQK DLQRNEK+A +LKAVEDEKDALEVALGAE AN TQQK MYTL G+N+EAQSV+MELRNQVETLKK+KSQAEKE ATLLQLK DL+R+EK+AVA+LK VEDEKDALEVALGAERA +AMQQ
Sbjct: 1 MKAWHKVTHWSWRSSKSSKSKTQPSEEPAQAEETPVQVARNTRTLLVHGHEKESNNFSRFGQTPAYGNHE--EEKTTVDPSYCAYGAKEFVSEEECRGEECPNVRLPRKKESLRTGDQEEIQKLRATLLQQKDDLQRNEKMAVAKLKAVEDEKDALEVALGAERANMVTQQKTMYTLGGKNVEAQSVDMELRNQVETLKKKKSQAEKEHRATLLQLKDDLQRNEKMAVAKLKAVEDEKDALEVALGAERAKTAMQQ 254
BLAST of mRNA_Ecto-sp13_S_contig19116.6091.1 vs. uniprot
Match: D7FLK2_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK2_ECTSI) HSP 1 Score: 291 bits (746), Expect = 3.070e-89 Identity = 222/247 (89.88%), Postives = 232/247 (93.93%), Query Frame = 1
Query: 472 VASVRLKAVEDEKDALEVALGAETANTATQQKAMYTLRGENIEAQSVEMELRNQVETLKKEKSQAEKELDATLLQLKYDLERSEKVAVARLKEVEDEKDALEVALGAERANSAMQQKTIDCMKNTLREKTIEAQLLESELGEQVETLKKEKSKAAENGKRQTKEEKIRNGLARLVEKDLRKQVATLEQSIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQQADEIRNLLAQLQ 1212
+A RLKAVEDEK ALEVALGAE ANTATQQK MYTLRG+NIEAQSVEMELR+QVETLK+EKSQAEKEL ATLLQ KYDLERSEK+AV RLK VEDEK ALEVALGAERAN AMQQKTI+ MKNTLREK IEAQLLESELGEQVETLKKEKSKAAE+G+RQTKE+KIRNGLARLVEKDLRKQVATL+QSIK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQQADEIRNLL QLQ
Sbjct: 1 MALARLKAVEDEKAALEVALGAERANTATQQKTMYTLRGKNIEAQSVEMELRSQVETLKQEKSQAEKELRATLLQWKYDLERSEKMAVDRLKVVEDEKAALEVALGAERANMAMQQKTINYMKNTLREKNIEAQLLESELGEQVETLKKEKSKAAEDGQRQTKEDKIRNGLARLVEKDLRKQVATLKQSIKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQQADEIRNLLVQLQ 247
BLAST of mRNA_Ecto-sp13_S_contig19116.6091.1 vs. uniprot
Match: D7G7H4_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H4_ECTSI) HSP 1 Score: 136 bits (342), Expect = 3.630e-31 Identity = 129/329 (39.21%), Postives = 163/329 (49.54%), Query Frame = 1
Query: 55 MKAWPKVTLWSRRSSKSSKSKTPSSEEPAQAEEIPVQVAHNNTILFVDGREGRYNFSRFGQTLAYGNQEKEEEKTTVDSSHRAYGAKELVSEEECRGEDCPNVRLLRKQE-LLRKSDQEELQKLRATLLQQKHDLQRNEKVASVRLKAVEDEKDALEVALGAETANTATQQKAMYTLRGENIEAQSVEMELRNQVETLKKEKSQAEKELDATLLQLKYDLERSEKVAVARLKEVEDEKDALEVALGAERANSAMQQKTIDCMKNTLREKTIEAQLLESELGEQVETLKKEKSKAAENGKRQTKEEKIRNGLARLVEKDLRKQVATLEQS 1038
MKA +VT W RSS SSKS T S EEP QA++ + +DG N GQ G+QE EE T VD+ +YG +L++E++ GED + RLL KQE L+R SD+EE+Q+L A+LLQ +D +R+E++A+ RLKAVE EK ALEVA+ AE A TA QQK M+ LR +IEAQSVE +LRN+++TLK EKSQ NG TKEEK+R GLARLVEKDLRK+VA LEQS
Sbjct: 1 MKALHRVTRWRWRSSTSSKSNT-SPEEPEQAKDALA-------VRSLDG-----NRPPVGQLEPNGHQEGEE--TKVDAPGHSYGPNQLIAEDQRHGEDNADERLLSKQEELVRNSDKEEIQELCASLLQLHNDRRRSEEIAAARLKAVEGEKAALEVAIQAERAKTAMQQKTMHFLRQISIEAQSVETQLRNELQTLKNEKSQGT------------------------------------------------------------------------------------------NGHSDTKEEKMRRGLARLVEKDLRKRVAVLEQS 224
BLAST of mRNA_Ecto-sp13_S_contig19116.6091.1 vs. uniprot
Match: D7G7H5_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H5_ECTSI) HSP 1 Score: 103 bits (256), Expect = 2.540e-20 Identity = 72/121 (59.50%), Postives = 89/121 (73.55%), Query Frame = 1
Query: 673 ELDATLLQLKYDLERSEKVAVARLKEVEDEKDALEVALGAERANSAMQQKTIDCMKNTLREKTIEAQLLESELGEQVETLKKEKSKAAENGKRQTKEEKIRNGLARLVEKDLRKQVATLEQ 1035
EL A+LL+L +L RSE++A ARLK VEDEK ALEVAL ERA +AMQ+KT+ + LR+ I+AQ +E EL Q+ETL+KEK G TKE+KIR+GLARLVE DL+KQVATL Q
Sbjct: 4 ELHASLLKLHDNLRRSEEMAAARLKAVEDEKAALEVALREERAKTAMQEKTM----HFLRQTNIQAQSVEIELRNQMETLQKEKKS---QGLSHTKEQKIRSGLARLVENDLQKQVATLAQ 117
BLAST of mRNA_Ecto-sp13_S_contig19116.6091.1 vs. uniprot
Match: A0A6H5JJM5_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM5_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.240e-19 Identity = 102/236 (43.22%), Postives = 129/236 (54.66%), Query Frame = 1
Query: 55 MKAWPKVTLWSRRSSKSSKSKTPSSEEPAQAEEIP---VQVAHNNTILFVDGREGRYNFSRFGQTLAYGNQEKEEEKTTVDSSHRAYGAKELVSEEECRGEDCPNVRLLRKQE-LLRKSDQEEL-QKLRATLLQQKHDL-QRNEKVASVRLKAVEDEKDALEVALGAETANTATQQKAMYTLRGENIEAQSVEME---------------LRNQVETLKKEKSQAEKELDATLLQL 699
MKAW ++T W SSK S +KTP E AQAEE + A + ILF G R GQ GN E EEKT VD S ++YG KE GED + RLLRK E L+R ++EE+ + L +LL+ HD+ +R+E++A+ RLKAVEDEK A EVA E A T Q+K M+ LR NI+AQSVEM LR QV TL + SQ E+ + QL
Sbjct: 1 MKAWQRMTHWRWCSSKWSTAKTPPQEGSAQAEEXXXXXAKAAAAHMILFAGELGGI--LPRVGQVQPDGNGE--EEKTKVDPSRQSYGPKESP------GEDPVDERLLRKHEGLVRTGNEEEMIEGLHVSLLKL-HDIPRRSEEMAAARLKAVEDEKAAFEVAKREEKAKTTMQEKTMHFLRRTNIQAQSVEMSCEIRWSGLALLVEKNLRKQVATLTQSLSQQAGEIRSLSTQL 225
BLAST of mRNA_Ecto-sp13_S_contig19116.6091.1 vs. uniprot
Match: D7G7H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7H6_ECTSI) HSP 1 Score: 101 bits (251), Expect = 3.660e-19 Identity = 117/331 (35.35%), Postives = 140/331 (42.30%), Query Frame = 1
Query: 55 MKAWPKVTLWSRRSSKSSKSKTPSSEEPAQAEEIPVQVAHNNT---ILFVDGREGRYNFSRFGQTLAYGNQEKEEEKTTVDSSHRAYGAKELVSEEECRGEDCPNVRLLRKQELLRKSDQEELQKLRATLLQQKHDLQRNEKVASVRLKAVEDEKDALEVALGAETANTATQQKAMYTLRGENIEAQSVEMELRNQVETLKKEKSQAEKELDATLLQLKYDLERSEKVAVARLKEVEDEKDALEVALGAERANSAMQQKTIDCMKNTLREKTIEAQLLESELGEQVETLKKEKSKAAENGKRQTKEEKIRNGLARLVEKDLRKQVATLEQS 1038
MK W K T W RR SK S+ ++P P Q+ V ++N+ + V +G N SR G+ NQE+EEE T VD S +YGA V+EE+ RG D + RLLRKQEL+R EK ALEVAL AE A TA QQK M+ LR NIEAQS+E ELR+QVETLK +A G GE G+ QTKEEK+R+GLARLVEKDLRKQVATLEQS
Sbjct: 1 MKLWHKATRWRRRGSKCSELESPLPRAPVQS------VGNHNSKSIVWLVSELDG--NTSRIGENQPDVNQEEEEE-TKVDPSRHSYGAMGFVAEEQRRGGDNADERLLRKQELVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKAALEVALLAERAKTARQQKTMHFLRETNIEAQSLETELRDQVETLK-------------------------------------------IASGH---------------------------------GE---------------GRFQTKEEKVRSGLARLVEKDLRKQVATLEQS 231 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19116.6091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19116.6091.1 >prot_Ecto-sp13_S_contig19116.6091.1 ID=prot_Ecto-sp13_S_contig19116.6091.1|Name=mRNA_Ecto-sp13_S_contig19116.6091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=393bp MKAWPKVTLWSRRSSKSSKSKTPSSEEPAQAEEIPVQVAHNNTILFVDGRback to top mRNA from alignment at Ecto-sp13_S_contig19116:2..2377- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19116.6091.1 ID=mRNA_Ecto-sp13_S_contig19116.6091.1|Name=mRNA_Ecto-sp13_S_contig19116.6091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2376bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19116:2..2377- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19116:2..2377- >mRNA_Ecto-sp13_S_contig19116.6091.1 ID=mRNA_Ecto-sp13_S_contig19116.6091.1|Name=mRNA_Ecto-sp13_S_contig19116.6091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1179bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19116:2..2377- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |