mRNA_Ecto-sp13_S_contig1911.6089.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1911.6089.1 vs. uniprot
Match: D7FI51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI51_ECTSI) HSP 1 Score: 606 bits (1562), Expect = 5.620e-217 Identity = 307/330 (93.03%), Postives = 316/330 (95.76%), Query Frame = 1
Query: 1 MPAHCTTALVLLGLPLGIQGFVPLLAKNAAGANSGAVTTPTSGTTAATTGCRRWQHEHRIASGPSSSCAAPPAHALRAAPRPASPASLPEYFMALFGGNKGSSITKTSKAEELEADLLSAIEGVQGRGREVTQDQRELVDKAVEALENDGGLPKAASSPVVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPFRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFKALPFNIPYPVPFRLFGDEVKGWIDVTYLSKRLRIARGNKGTLFVLQRPPSPPPP 990
M AHCTTALVLLGLPLGIQGFVP LA NAAGAN+GA TTPT GTTAA TGCRRWQHEHRIASG SSSC APPAHA RAAPRPASPASLPEYFMALFGGNKGSS T+ SKAEELEADLLSAI+GVQGRGR+VTQ+QRELVDKAVEALE+DGG P AASSP+VDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTP RPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDF+ALPFNIPYPVPFRLFGDEVKGWIDVTYLS+RLRIARGNKGTLFVLQRPPSPPPP
Sbjct: 1 MLAHCTTALVLLGLPLGIQGFVPSLANNAAGANNGAATTPTPGTTAAATGCRRWQHEHRIASG-SSSCRAPPAHAHRAAPRPASPASLPEYFMALFGGNKGSSATRASKAEELEADLLSAIKGVQGRGRDVTQEQRELVDKAVEALESDGGAPNAASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQRPPSPPPP 329
BLAST of mRNA_Ecto-sp13_S_contig1911.6089.1 vs. uniprot
Match: A0A835Z824_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z824_9STRA) HSP 1 Score: 261 bits (668), Expect = 4.520e-83 Identity = 129/206 (62.62%), Postives = 155/206 (75.24%), Query Frame = 1
Query: 376 GRGREVTQDQRELVDKAVEALENDGGLPKAASSPVVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLF-SEVPPTVTNVVDFGPRVGQLRVTALASTPFRPMEGFVPRKGDGRFFGLNILGVSQTTP---PEDPSRRIDFQFDEAGFDFKALPFNIPYPVPFRLFGDEVKGWIDVTYLSKR----LRIARGNKGTLFVLQR 969
GRG+ V Q+E VD + LE GG+P A + +DG WRL++T+TPGTASP+QRSFV VD F+IYQ+I L+ ++ P TV NVVDFG RVG+L V ALAST RP++GFVPR+GDGR GLN+ GVSQT P P RIDF+FD+AGFD K LPF IPYPVPFR+ GDEVKGWID+TYLS++ LRIARGNKGT FVL R
Sbjct: 3 GRGKGVEGAQKERVDSLIAELEASGGVPDGACADSIDGVWRLLYTSTPGTASPIQRSFVSVDAFSIYQNIALYGADAPATVANVVDFGARVGRLEVAALASTARRPLDGFVPRRGDGRILGLNVFGVSQTAEEGAPRRPGARIDFKFDDAGFDLKLLPFRIPYPVPFRILGDEVKGWIDITYLSRQPEGGLRIARGNKGTTFVLVR 208
BLAST of mRNA_Ecto-sp13_S_contig1911.6089.1 vs. uniprot
Match: A0A4D9CNY0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNY0_9STRA) HSP 1 Score: 245 bits (626), Expect = 1.040e-75 Identity = 128/249 (51.41%), Postives = 166/249 (66.67%), Query Frame = 1
Query: 241 RPASPASLPEYFMALFGGNKGSSITKTSKAEELEADLLSAIEGVQGRGREVTQDQRELVDKAVEALENDGGLPKAASSPVVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLF----SEVPPTVTNVVDFGPRVGQLRVTALASTPFRPMEGFVPRKGDGRFFGLNILGVSQTTPPED--PSRRIDFQFDEAGFDFKALPFNIPYPVPFRLFGDEVKGWIDVTYLSKRLRIARGNKGTLFVLQR 969
+P +P SLP +A + G+S E LL AI+G+ R + + + V ++ LE G+PKA ++ ++G WRL++T++ TASP+Q +FVG FA+YQDID+ S P TVTN+VDFG +G L V ALASTP RP+ F PR GDGRFFGLNILG+S+T P D P RIDF+FD AGFD LPF IPYPVPFRL DEVKGW++VTYLS RLR++RGNKGT+FVL++
Sbjct: 31 KPPTPTSLPAA-LASWPLTLGASRKSPRVLPNTENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQDIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPARPIPNFAPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEK 278
BLAST of mRNA_Ecto-sp13_S_contig1911.6089.1 vs. uniprot
Match: A0A6V1SXP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SXP2_HETAK) HSP 1 Score: 244 bits (624), Expect = 1.780e-75 Identity = 121/207 (58.45%), Postives = 144/207 (69.57%), Query Frame = 1
Query: 349 LLSAIEGVQGRGREVTQDQRELVDKAVEALENDGGLPKAASSPVVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPFRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFKALPFNIPYPVPFRLFGDEVKGWIDVTYLSKRLRIARGNKGTLFVLQR 969
LL + + RG E V + V LE G+P A P ++G WRL+ TTTPGTASP+QRSFVG F+++QDIDL PTV NVV+FG +G L V ALAST RP+ GFVPR+GDG+ GLNI GVS T PP +P +RIDF+FD A FDF LPF IPYPVPFR GDEV GWID+TYLS+ LRIARGNKGT F+LQ+
Sbjct: 68 LLETLAALTRRGAGADAAAAERVAEQVAVLERTQGIPDPADYPGLNGRWRLLHTTTPGTASPIQRSFVGAAAFSVFQDIDLARPDRPTVANVVEFG-SLGVLTVEALASTAARPLPGFVPRRGDGKILGLNIFGVSSTEPPANPKQRIDFKFDYAAFDFNFLPFAIPYPVPFRYLGDEVTGWIDITYLSESLRIARGNKGTTFILQK 273
BLAST of mRNA_Ecto-sp13_S_contig1911.6089.1 vs. uniprot
Match: A0A7R9VSS3_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VSS3_9CHLO) HSP 1 Score: 240 bits (612), Expect = 1.140e-71 Identity = 124/238 (52.10%), Postives = 160/238 (67.23%), Query Frame = 1
Query: 268 EYFMALFGGNKGSSITKTSKAEELEADLLSAIEGVQGRGRE-VTQDQRELVDKAVEALENDGGLPKAA-SSPVVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPFRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFKALPFNIPYPVPFRLFGDEVKGWIDVTYLSK--RLRIARGNKGTLFVLQR 969
E F L + S K + +A +L A+ GV+GRG+ ++++QR ++ AVE LE DGG+ K ++DG WRL+FT+ PGTASP+Q +F GV+ F+++QD+ L E P + NVVDFGP VG LRV ALAST +P+EGF PRKG G L G S PP+ P RIDFQFD+A F FK +PF IPYPVPFRL GDE KGW+DVTY+S+ R++RGNKGTLFVL R
Sbjct: 34 EDFKTLSLRRRSGSRGPVGKVSDAQATILQALTGVKGRGKSGLSEEQRAAINAAVELLEADGGVGKPTRDEQLLDGRWRLLFTSRPGTASPIQNTFTGVEAFSVFQDVQLRGE-QPRIDNVVDFGPDVGYLRVEALASTDNKPLEGFTPRKGAG----LPFFGKSFVYPPQKPDMRIDFQFDKAAFYFKKVPFTIPYPVPFRLLGDETKGWLDVTYISRDGNFRLSRGNKGTLFVLVR 266
BLAST of mRNA_Ecto-sp13_S_contig1911.6089.1 vs. uniprot
Match: A0A5J4YBD5_9CHLO (Putative plastid-lipid-associated chloroplastic-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YBD5_9CHLO) HSP 1 Score: 238 bits (608), Expect = 5.400e-71 Identity = 121/227 (53.30%), Postives = 155/227 (68.28%), Query Frame = 1
Query: 310 ITKTSKAEELEADLLSAIEGVQGRGRE-VTQDQRELVDKAVEALENDGGLPKAASSPVVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPFRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFKALPFNIPYPVPFRLFGDEVKGWIDVTYLSK--RLRIARGNKGTLFVLQRPPSP 981
+ K S +E LL AI V+GRG+ ++ +Q ++ AVE+LE D G+ SP+++G WRL+FTT PG+ASP+Q++FVGVD F +YQD+ L S V N+VDFG +VG L+V A AST GFVPR+ G L + G S TPP P+ R+DFQFD+A F F ALPF IPYPVPF+L GDE KGWIDVTYLS+ +LR+ RGNKGTLFVL + PSP
Sbjct: 54 VIKRSSVKEARESLLGAITDVKGRGKSGMSPEQLSKLEAAVESLEADRGVSDPTKSPLLEGRWRLLFTTRPGSASPIQKTFVGVDAFTVYQDVLLSSAEKVRVNNIVDFGAKVGTLKVEAEASTDSNTRPGFVPRQKPG----LAVFGKSSNTPPVHPNMRVDFQFDKAAFAFSALPFKIPYPVPFKLLGDETKGWIDVTYLSQDGKLRLTRGNKGTLFVLLKDPSP 276
BLAST of mRNA_Ecto-sp13_S_contig1911.6089.1 vs. uniprot
Match: A0A2P6VFQ7_9CHLO (Putative plastid-lipid-associated chloroplastic isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFQ7_9CHLO) HSP 1 Score: 234 bits (597), Expect = 3.270e-69 Identity = 123/223 (55.16%), Postives = 152/223 (68.16%), Query Frame = 1
Query: 325 KAEELEADLLSAIEGVQGRGRE-VTQDQRELVDKAVEALENDGGLPKAASSPVVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPT-VTNVVDFGPRVGQLRVTALASTPFRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFKALPFNIPYPVPFRLFGDEVKGWIDVTYLSK--RLRIARGNKGTLFVLQRPPSP 981
K E + LL I GV+GRG+ +T +Q+ D+AV LE DGG+ +SP++DG W L+FT+ PGTASP+QR+F VD ++YQDI++ E V+ VVDFG VG LRV A A+T RP+ GF PR G G FG I+G S T PP P R+ FQFD A F KALPF IPYPVPF+L GDE KGWIDVTYLS RLR++RGNKGTLFVLQ+ +P
Sbjct: 71 KLERAQQTLLGVIAGVEGRGKGGLTPEQQAAFDEAVAILEADGGVEAPTTSPLLDGRWALLFTSRPGTASPIQRTFTAVDSVSVYQDIEVGDECEQARVSQVVDFGSAVGFLRVEAEANTDSRPLPGFTPRVGQGLPFG--IMGKSSTGPPARPDMRVGFQFDRAAFTLKALPFKIPYPVPFKLLGDERKGWIDVTYLSPDGRLRLSRGNKGTLFVLQKEVAP 291
BLAST of mRNA_Ecto-sp13_S_contig1911.6089.1 vs. uniprot
Match: A0A2P6TS10_CHLSO (Putative plastid-lipid-associated chloroplastic n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TS10_CHLSO) HSP 1 Score: 246 bits (627), Expect = 6.440e-69 Identity = 127/218 (58.26%), Postives = 150/218 (68.81%), Query Frame = 1
Query: 325 KAEELEADLLSAIEGVQGRGRE-VTQDQRELVDKAVEALENDGGLPKAASSPVVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPFRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFKALPFNIPYPVPFRLFGDEVKGWIDVTYLSK--RLRIARGNKGTLFVLQR 969
K E + +L AI VQGRG+ +T +Q+ D AV LE DGG+ SP++DG WRL+FTT PGT+SP+QR+F VD F IYQDIDL E P V VVDFG VG LRV A AST RP+ GF PR+G+G FG I+G S + PP P R+DFQFD A F F ALPF +PYPVPFRL GDE KGWIDVTYLS +LR+ RGNKGTLFVL +
Sbjct: 845 KVERAQQAVLDAIADVQGRGKGGMTPEQQAAFDAAVAVLEADGGMAAPTDSPLLDGRWRLLFTTRPGTSSPIQRTFTAVDSFKIYQDIDLAGE-QPRVCQVVDFGKNVGYLRVEAEASTDSRPLAGFTPRRGEGLPFG--IMGRSSSEPPARPGLRVDFQFDRAAFTFNALPFKVPYPVPFRLLGDEAKGWIDVTYLSPDGKLRLTRGNKGTLFVLAK 1059
BLAST of mRNA_Ecto-sp13_S_contig1911.6089.1 vs. uniprot
Match: A0A7S1WYS5_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1WYS5_9CHLO) HSP 1 Score: 231 bits (589), Expect = 3.980e-68 Identity = 113/218 (51.83%), Postives = 152/218 (69.72%), Query Frame = 1
Query: 319 TSKAEELEADLLSAIEGVQGRGRE-VTQDQRELVDKAVEALENDGGLPKAASSPVVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPFRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFKALPFNIPYPVPFRLFGDEVKGWIDVTYLSK--RLRIARGNKGTLFVL 963
TSK + EA++L ++ +GRG++ ++ +Q+E + A+ LE DGGL +SP++DG W+L++T+ PG++SP+QR+F VD F ++Q++ L + N VDFG +VG LRV A A+T RP+ GFVPR+G G L LG S T PP P++RIDFQFD A F+F LPF IPYPVPFRL GDE KGWIDVTY+SK RI+RGNKGT FVL
Sbjct: 60 TSKVKRAEAEVLDILQSARGRGKDGLSSEQQEALAAAIYVLEEDGGLKAPTASPLIDGQWKLLYTSRPGSSSPIQRTFTAVDAFTVFQEVYLRQSDKARINNCVDFGEQVGILRVEAEANTDTRPIPGFVPRRGAG----LPFLGKSSTYPPSRPNQRIDFQFDRAAFNFYRLPFQIPYPVPFRLVGDEGKGWIDVTYMSKDGEFRISRGNKGTTFVL 273
BLAST of mRNA_Ecto-sp13_S_contig1911.6089.1 vs. uniprot
Match: A0A0D2MM87_9CHLO (Putative plastid-lipid-associated protein 12 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MM87_9CHLO) HSP 1 Score: 228 bits (582), Expect = 2.930e-67 Identity = 118/235 (50.21%), Postives = 157/235 (66.81%), Query Frame = 1
Query: 301 GSSITKTSKAEELEADLLSAIEGVQGRGRE-VTQDQRELVDKAVEALENDGGLPKAASSPVVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPFRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFKALPFNIPYPVPFRLFGDEVK------GWIDVTYLSK--RLRIARGNKGTLFVLQRPPS 978
G++ TK E +L A+ +GRG+E ++++ + + A+ LE DGG+ + +DG WRL++T+ PG+ASP+QR+F GV+ F IYQ++DL S++P V NVVDFG +G L V A AST RP+EGF PR G+G FG ILG S TPP P+ RIDFQFD+A F FK LPF+IPYPVPFR+ GDE K GWID TY+++ R+ARGNKGTLFVL + P
Sbjct: 12 GTTRTKAGSRATTELAVLDALRSAKGRGKEGLSEEALQQLSLAISVLEQDGGVADPTTLDAIDGKWRLLYTSRPGSASPIQRTFTGVEAFKIYQEVDLSSDLP-RVNNVVDFGEEIGYLIVQAKASTESRPLEGFTPRVGEGLPFG--ILGKSFNTPPARPNSRIDFQFDQAAFHFKFLPFSIPYPVPFRILGDERKARPPSPGWIDTTYMNQDGTFRLARGNKGTLFVLVKAPQ 243 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1911.6089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1911.6089.1 >prot_Ecto-sp13_S_contig1911.6089.1 ID=prot_Ecto-sp13_S_contig1911.6089.1|Name=mRNA_Ecto-sp13_S_contig1911.6089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=331bp MPAHCTTALVLLGLPLGIQGFVPLLAKNAAGANSGAVTTPTSGTTAATTGback to top mRNA from alignment at Ecto-sp13_S_contig1911:9230..13367- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1911.6089.1 ID=mRNA_Ecto-sp13_S_contig1911.6089.1|Name=mRNA_Ecto-sp13_S_contig1911.6089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1911:9230..13367- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1911:9230..13367- >mRNA_Ecto-sp13_S_contig1911.6089.1 ID=mRNA_Ecto-sp13_S_contig1911.6089.1|Name=mRNA_Ecto-sp13_S_contig1911.6089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=993bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1911:9230..13367- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |