mRNA_Ecto-sp13_S_contig19092.6079.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19092.6079.1
Unique NamemRNA_Ecto-sp13_S_contig19092.6079.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19092.6079.1 vs. uniprot
Match: A0A6H5KG25_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG25_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 1.060e-67
Identity = 114/121 (94.21%), Postives = 116/121 (95.87%), Query Frame = 1
Query:   25 QAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMFEVCDTDEAYSFEMSRISKMFDLNLGEVKERCAAIATPFYQKALGSAATKWESVKADQLKRARQTLGMDEGVAREMHKGVY 387
            QAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMFEVCDT+EAYSFEMSRISKMFDLNLGEVKERCAAIA PFY+KALGSAA KWESVKADQLKRARQTLGMDE VA EMHK VY
Sbjct:  231 QAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMFEVCDTEEAYSFEMSRISKMFDLNLGEVKERCAAIANPFYRKALGSAAAKWESVKADQLKRARQTLGMDEEVAHEMHKEVY 351          
BLAST of mRNA_Ecto-sp13_S_contig19092.6079.1 vs. uniprot
Match: A0A835YSG6_9STRA (IAP100 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSG6_9STRA)

HSP 1 Score: 125 bits (314), Expect = 7.640e-31
Identity = 62/123 (50.41%), Postives = 87/123 (70.73%), Query Frame = 1
Query:   19 HPQAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMFEVCDTDEAYSFEMSRISKMFDLNLGEVKERCAAIATPFYQKALGSAATKWESVKADQLKRARQTLGMDEGVAREMHKGVY 387
            H +A++ +Y + V+ TP  ELADE++P RRALDKF+FL DRMFEV DT+EAY +EM RI K+F L+  +V  RC AIA PFY KAL +AA + ++++   L+ A +TLG+ + +  EMH   Y
Sbjct:  169 HYEASTLLYRERVLFTPEEELADEYNPARRALDKFLFLADRMFEVSDTEEAYEYEMGRIRKVFGLDAADVNARCLAIARPFYAKALDAAAARLDTLRPGALELAEKTLGITDVMRDEMHLEAY 291          
BLAST of mRNA_Ecto-sp13_S_contig19092.6079.1 vs. uniprot
Match: A0A7S2SEM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SEM4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.650e-23
Identity = 55/126 (43.65%), Postives = 83/126 (65.87%), Query Frame = 1
Query:   19 HPQAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMF-EVCDTDEAYSFEMSRISKMFDLNLGEVKERCAAIATPFYQKALGSAATKWES--VKADQLKRARQTLGMDEGVAREMHKGVY 387
            H +AA     Q  + TP  +L D   P+R ++DKF+F  +R+F +  +T+EA+ +EMSR++K FDL+L    +R A +A PFY +AL SA +K ++  V AD L+RAR TLG+D+ VAR+MH   +
Sbjct:  249 HTKAAKDFSRQTSLFTPVEDLEDPDHPDRMSIDKFLFFSERIFHQGGETEEAFKYEMSRVAKAFDLSLRTAMDRVAEVAEPFYDRALQSARSKIDTGAVSADMLERARNTLGIDDSVARDMHIATF 374          
BLAST of mRNA_Ecto-sp13_S_contig19092.6079.1 vs. uniprot
Match: A0A7S2UAH8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAH8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 6.050e-22
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 1
Query:   19 HPQAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMFEVC-DTDEAYSFEMSRISKMFDLNL--------------GEVKERCAAIATPFYQKALGSAATKWES--VKADQLKRARQTLGMDEGVAREMH 375
            H  AA  +Y Q  + TP  ELAD   P+R ALDKF+FL +R F    +T EA+S+EMSRI+K FD+ +               E+ ER A +A PFY++AL S   K +S  V+ D LKRAR T+G+ E VAR+MH
Sbjct:  236 HATAAKDLYRQTCLFTPEEELADVDHPDRMALDKFLFLSERTFVGNGETPEAFSYEMSRIAKAFDIKITKSNAAAADVGGAMSEIMERVAHVAEPFYRRALVSTRAKLDSGAVQPDVLKRARATVGISEEVARDMH 371          
BLAST of mRNA_Ecto-sp13_S_contig19092.6079.1 vs. uniprot
Match: B7GEF3_PHATC (Translocator of the inner chloroplast envelope membrane 110k n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GEF3_PHATC)

HSP 1 Score: 97.1 bits (240), Expect = 7.240e-21
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 1
Query:   19 HPQAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMFEVC-DTDEAYSFEMSRISKMFDLNLGEVKERCAAIATPFYQKALGSAATKW--ESVKADQLKRARQTLGMDEGVAREMHKGVY 387
            H  AA+  Y    + TP+ +L D   P+R+A+DKF+FL +R  +   +TDEA+SFEM R++K FDL+  EV ER A    PFYQ+AL S  +K     V +  L+RAR+TLG+ +  A+++H   +
Sbjct:  248 HAAAAAEWYRTTCLFTPTEDLEDPSHPDRQAMDKFLFLTERALKQGGETDEAFSFEMKRVAKAFDLSYTEVLERVAETVEPFYQRALKSTRSKLGTNQVSSAMLERARKTLGVSDATAKDLHVACF 373          
BLAST of mRNA_Ecto-sp13_S_contig19092.6079.1 vs. uniprot
Match: A0A1Z5J5X5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J5X5_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 4.090e-19
Identity = 52/121 (42.98%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   19 HPQAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMFEVCDTDEAYSFEMSRISKMFDLNLGEVKERCAAIATPFYQKALGSAATKW--ESVKADQLKRARQTLGMDEGVAREMH 375
            H  AA+  Y Q  + TP+ EL D   P+R A+DK +FL +R     D+ +A++FEM+R++K   L L    ER A++  PFY +AL S  +K    +V +D LKRAR+TLG+ E VA +MH
Sbjct:  229 HATAAAEWYRQTCLFTPTEELEDPKHPDRLAMDKLLFLSERALSE-DSPQAFNFEMTRVAKAVGLTLPVAMERVASVVEPFYHRALQSTRSKLGTNAVSSDMLKRARETLGIKEEVAADMH 348          
BLAST of mRNA_Ecto-sp13_S_contig19092.6079.1 vs. uniprot
Match: A0A448YYM0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYM0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.850e-17
Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   19 HPQAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMFEVC-DTDEAYSFEMSRISKMFDLNLGEVKERCAAIATPFYQKALGSAATKWESVKAD--QLKRARQTLGMDEGVAREMHKGVY 387
            H  AA   Y    + TP  +L D   P+R+A+DKF+FL +R  +   +TDEA+ FEM+R++K   L+L +   R A +  PFY +AL S   K    K     L+RARQTLG+D+  A +MH   +
Sbjct:  227 HAAAADEWYRTTCLFTPEEDLEDPDHPDRQAMDKFLFLTERALKQGNETDEAFRFEMTRVAKSMKLSLMDAMFRVADVQQPFYARALVSTRAKLGEGKVSGAMLERARQTLGIDDDTAHDMHVACF 352          
BLAST of mRNA_Ecto-sp13_S_contig19092.6079.1 vs. uniprot
Match: A0A7S4EEP3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEP3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.760e-16
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 1
Query:   19 HPQAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMFEVCD-TDEAYSFEMSRISKMFDLNLGEVKERCAAIATPFYQKALGSAATKWESVKADQ--LKRARQTLGMDEGVAREMHKGVY 387
            H  AA   Y    + TP  +L D   P+R+A+DK +FL +R  +  D TD A+ FEM+R+SK   L+L +   R A +  PFY +AL S   K    K  +  L+RARQTLG+D+  A +MH   +
Sbjct:  241 HAAAAEEWYRTTCLFTPEEDLDDPDHPDRQAMDKLLFLTERALKQGDETDAAFRFEMARVSKFMKLSLVDGMYRVADVQQPFYARALVSTRAKLGEGKVSEAMLERARQTLGIDDDTAHDMHVACF 366          
BLAST of mRNA_Ecto-sp13_S_contig19092.6079.1 vs. uniprot
Match: R1ELU4_EMIHU (Tic110 n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ELU4_EMIHU)

HSP 1 Score: 62.4 bits (150), Expect = 9.580e-9
Identity = 30/92 (32.61%), Postives = 51/92 (55.43%), Query Frame = 1
Query:  112 LDKFIFLCDRMFEVCDTDEAYSFEMSRISKMFDLNLGEVKERCAAIATPFYQKALGSAATKWESVKADQLKRARQTLGMDEGVAREMHKGVY 387
            L K+IFL +R+F   +++E Y +E  R  ++F L+  +  +R  A+A PFY   L  A  +     A QL   R +LG+ E  A ++H+ ++
Sbjct:  236 LSKYIFLAERLFAKDESEEGYRYESLRAQRLFGLSPADWSDRAEAVAVPFYAGTLDKAVLQAVPATAAQLGGMRDSLGVSEATAAQLHRDIF 327          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19092.6079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KG25_9PHAE1.060e-6794.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YSG6_9STRA7.640e-3150.41IAP100 protein n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S2SEM4_9STRA6.650e-2343.65Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2UAH8_9STRA6.050e-2245.59Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B7GEF3_PHATC7.240e-2142.06Translocator of the inner chloroplast envelope mem... [more]
A0A1Z5J5X5_FISSO4.090e-1942.98Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A448YYM0_9STRA5.850e-1739.68Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EEP3_9STRA2.760e-1639.68Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
R1ELU4_EMIHU9.580e-932.61Tic110 n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19092contigEcto-sp13_S_contig19092:1913..2750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score232.6
Seed ortholog evalue1e-58
Seed eggNOG ortholog2880.D7FN32
Preferred nameTic110
Model size387
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Chloroplast envelope transporter
EggNOG OGs2CXZA@1,2S0W8@2759
Cds size387
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462973.1569295-CDS-Ecto-sp13_S_contig19092:1912..20621681462973.1569295-CDS-Ecto-sp13_S_contig19092:1912..2062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19092 1913..2062 +
1681462973.1759405-CDS-Ecto-sp13_S_contig19092:2513..27501681462973.1759405-CDS-Ecto-sp13_S_contig19092:2513..2750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19092 2514..2750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19092.6079.1prot_Ecto-sp13_S_contig19092.6079.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19092 1913..2750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19092.6079.1

>prot_Ecto-sp13_S_contig19092.6079.1 ID=prot_Ecto-sp13_S_contig19092.6079.1|Name=mRNA_Ecto-sp13_S_contig19092.6079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
MFCDCRHPQAASPVYSQFVMRTPSAELADEWSPNRRALDKFIFLCDRMFE
VCDTDEAYSFEMSRISKMFDLNLGEVKERCAAIATPFYQKALGSAATKWE
SVKADQLKRARQTLGMDEGVAREMHKGVY
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mRNA from alignment at Ecto-sp13_S_contig19092:1913..2750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19092.6079.1 ID=mRNA_Ecto-sp13_S_contig19092.6079.1|Name=mRNA_Ecto-sp13_S_contig19092.6079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=838bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19092:1913..2750+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTGCGATTGTCGCCACCCACAGGCAGCATCGCCAGTGTACAGCCA GTTTGTGATGAGGACCCCCTCCGCGGAGCTGGCGGACGAGTGGTCCCCCA ACCGCCGGGCCTTGGACAAGTTCATCTTCCTCTGCGACCGCATGTTCGAG GTGAGAACTTGTGATGGCACTCGAAAGCCGCTTTGTAGCGACGTACTTCC CCCCCCCCCCGAAGTTATTGCTGCGGTTCCCCTGCCGGTACATTTACCAA CTTCACTTGATAGGTTTGCGACACCAAGGAGGCGTACTCGTTCGAGATGA GCGGCTTCGTAGCACCGCCCCCCCCCTCCCCGAAGTTCCAACGTGCCCCC CCCCCCTACCCCCTCCAATTCCCCTACTGGTAGCCATCCTCACTCGAGAA GGTTTGCGACAACGGAGGAGACGTACTTGCACGAGATCAGCCGCTAAAGT AGCGCCCCCCCCAACCCGAAGTTCCAACACGTCCCTGCCCCATGCGTTTT CGCTTTATTGCGCCGCTATCCCCTCCCCCTGGCCGCCGCCGTCCTAATTT CAAACACGTCACCCCCTGCCCCTCCTGCACTTTCCCTGTGGCTTGAAAAA GGTTTGCGACACCGACGAGGCGTACTCGTTCGAGATGAGCCGCATCAGCA AGATGTTTGACCTCAACCTCGGTGAGGTGAAGGAGCGCTGCGCCGCCATC GCCACCCCTTTCTACCAAAAGGCGCTCGGCTCGGCCGCCACGAAGTGGGA GTCGGTTAAGGCTGACCAGCTCAAGAGGGCCCGCCAGACGCTGGGGATGG ACGAGGGGGTGGCCCGCGAGATGCACAAGGGGGTTTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19092:1913..2750+

>mRNA_Ecto-sp13_S_contig19092.6079.1 ID=mRNA_Ecto-sp13_S_contig19092.6079.1|Name=mRNA_Ecto-sp13_S_contig19092.6079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19092:1913..2750+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTGCGATTGTCGCCACCCACAGGCAGCATCGCCAGTGTACAGCCA
GTTTGTGATGAGGACCCCCTCCGCGGAGCTGGCGGACGAGTGGTCCCCCA
ACCGCCGGGCCTTGGACAAGTTCATCTTCCTCTGCGACCGCATGTTCGAG
GTTTGCGACACCGACGAGGCGTACTCGTTCGAGATGAGCCGCATCAGCAA
GATGTTTGACCTCAACCTCGGTGAGGTGAAGGAGCGCTGCGCCGCCATCG
CCACCCCTTTCTACCAAAAGGCGCTCGGCTCGGCCGCCACGAAGTGGGAG
TCGGTTAAGGCTGACCAGCTCAAGAGGGCCCGCCAGACGCTGGGGATGGA
CGAGGGGGTGGCCCGCGAGATGCACAAGGGGGTTTAC
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