mRNA_Ecto-sp13_S_contig19059.6062.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19059.6062.1
Unique NamemRNA_Ecto-sp13_S_contig19059.6062.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19059.6062.1 vs. uniprot
Match: D8LQA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA9_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 6.970e-67
Identity = 111/114 (97.37%), Postives = 111/114 (97.37%), Query Frame = 1 
Query:   10 FSQFQGIVLARRLHFVGQVWNVVWSTLVLFGIFREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 351
            F  FQGIVLARRLHFVGQVWNVVWSTLVLFGI REGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV
Sbjct:   29 FRHFQGIVLARRLHFVGQVWNVVWSTLVLFGILREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 142
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BLAST of mRNA_Ecto-sp13_S_contig19059.6062.1 vs. uniprot
Match: A0A6H5L548_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L548_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.440e-59
Identity = 101/114 (88.60%), Postives = 104/114 (91.23%), Query Frame = 1 
Query:   10 FSQFQGIVLARRLHFVGQVWNVVWSTLVLFGIFREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 351
            F  FQGIVLARRLH+V QVWNVVWSTLVL  +FREG  L IIVAII+YPIFVFYMACFLRLMSEL VSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVD AGTIV
Sbjct:   29 FRHFQGIVLARRLHYVAQVWNVVWSTLVLSTVFREGNPLAIIVAIIIYPIFVFYMACFLRLMSELTVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDGAGTIV 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19059.6062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQA9_ECTSI6.970e-6797.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L548_9PHAE1.440e-5988.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19059contigEcto-sp13_S_contig19059:2322..2675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size354
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005480.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462971.959974-CDS-Ecto-sp13_S_contig19059:2321..26751681462971.959974-CDS-Ecto-sp13_S_contig19059:2321..2675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19059 2322..2675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19059.6062.1prot_Ecto-sp13_S_contig19059.6062.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19059 2322..2675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19059.6062.1

>prot_Ecto-sp13_S_contig19059.6062.1 ID=prot_Ecto-sp13_S_contig19059.6062.1|Name=mRNA_Ecto-sp13_S_contig19059.6062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
VLLFSQFQGIVLARRLHFVGQVWNVVWSTLVLFGIFREGTALGIIVAIIV
YPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDA
DLAAYGVSGVDDAGTIV*
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mRNA from alignment at Ecto-sp13_S_contig19059:2322..2675-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19059.6062.1 ID=mRNA_Ecto-sp13_S_contig19059.6062.1|Name=mRNA_Ecto-sp13_S_contig19059.6062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19059:2322..2675- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCTTCTTTTTTCTCAGTTCCAAGGCATTGTTCTGGCGCGTAGATTGCA
CTTCGTCGGTCAGGTGTGGAACGTGGTGTGGTCGACGCTGGTGCTTTTCG
GGATCTTCAGAGAGGGAACCGCGCTCGGCATCATAGTCGCGATCATCGTT
TACCCCATCTTCGTCTTCTACATGGCCTGCTTCCTCCGGCTCATGTCCGA
GCTGGCCGTATCCGTGCTGCTCTTGCCGAGTCTCCTTGCTAAGAGCCAAG
GAAACGGAGGGAGAGGGGCGGTGGCAGAGCCCGTCGGCGTAGGCGATGCT
GACTTGGCGGCGTACGGTGTTTCTGGTGTTGACGACGCTGGCACGATAGT
ATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19059:2322..2675-

>mRNA_Ecto-sp13_S_contig19059.6062.1 ID=mRNA_Ecto-sp13_S_contig19059.6062.1|Name=mRNA_Ecto-sp13_S_contig19059.6062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19059:2322..2675- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCTTCTTTTTTCTCAGTTCCAAGGCATTGTTCTGGCGCGTAGATTGCA
CTTCGTCGGTCAGGTGTGGAACGTGGTGTGGTCGACGCTGGTGCTTTTCG
GGATCTTCAGAGAGGGAACCGCGCTCGGCATCATAGTCGCGATCATCGTT
TACCCCATCTTCGTCTTCTACATGGCCTGCTTCCTCCGGCTCATGTCCGA
GCTGGCCGTATCCGTGCTGCTCTTGCCGAGTCTCCTTGCTAAGAGCCAAG
GAAACGGAGGGAGAGGGGCGGTGGCAGAGCCCGTCGGCGTAGGCGATGCT
GACTTGGCGGCGTACGGTGTTTCTGGTGTTGACGACGCTGGCACGATAGT
ATGA
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