mRNA_Ecto-sp13_S_contig10656.604.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10656.604.1
Unique NamemRNA_Ecto-sp13_S_contig10656.604.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.060e-37
Identity = 86/96 (89.58%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:    1 AQNMGGMQRPGGGGMGHXXXXXXXXXXXXXDGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 288
            +QNMGGMQR        XXXXXXXXXXXX DGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE
Sbjct:  178 SQNMGGMQRQXXXXXXXXXXXXXXXXXXXPDGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 273
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BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 9.950e-24
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:   94 GMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 288
            G A    HTGVIRMRGLPFSATK DV+NFFQG+ V ++++QFVVRGDGRVTGEAFV+ SSPAE+E
Sbjct:  128 GQAGTAEHTGVIRMRGLPFSATKADVVNFFQGLNVLDESVQFVVRGDGRVTGEAFVTLSSPAEAE 192
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BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A7S2V6E7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.270e-18
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:  115 HTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSP 276
            HTG++R+RGLPFSA+K DVL+FF G  + ED+I+FVVR DGRVTGE++V F+SP
Sbjct:   23 HTGILRLRGLPFSASKADVLHFFDGYEIVEDSIEFVVRADGRVTGESYVQFTSP 76
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BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A6U4CVK5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CVK5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.490e-16
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  118 TGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESEE 291
            T V+RMRGLPFSA++ DV+ FF+ + V ED+I+F  R DGRVTGEA+V F SPA + E
Sbjct:   14 TTVLRMRGLPFSASRSDVVGFFRDLEVIEDSIKFATRSDGRVTGEAYVEFDSPATAAE 71
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BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A0K9RJE8_SPIOL (Uncharacterized protein n=4 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9RJE8_SPIOL)

HSP 1 Score: 80.9 bits (198), Expect = 2.780e-15
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   91 DGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 288
            D +  PV HTGV+++RGLPFSATK++++ FF G  +TED++      DGR TGEAFV F+ P +SE
Sbjct:  282 DDLNEPVKHTGVLKLRGLPFSATKEEIIEFFNGFVLTEDSVHITSMPDGRPTGEAFVEFAGPEDSE 347
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BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: W1NZZ1_AMBTC (RRM domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NZZ1_AMBTC)

HSP 1 Score: 78.2 bits (191), Expect = 8.890e-15
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  109 VVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 288
            V HTGV+++RGLPFSATK+D++ FF+   ++ED I  ++  +GR TGEAFV F+SP +S+
Sbjct:  168 VEHTGVLKLRGLPFSATKEDIIEFFKEFDISEDNITLMINSEGRATGEAFVEFASPEDSK 227
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BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A7S3YKW9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKW9_HETAK)

HSP 1 Score: 74.7 bits (182), Expect = 1.010e-14
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  115 HTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 288
            HTG +R+RG PF+ATK+DVL FF+G PV ED+I+FV R DG++TGE +V   S  +++
Sbjct:   23 HTGYLRLRGCPFTATKRDVLGFFRGHPVVEDSIEFVRRADGKMTGEVYVRLPSAEDAK 80
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BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A388KQ92_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KQ92_CHABU)

HSP 1 Score: 77.8 bits (190), Expect = 1.030e-14
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:  115 HTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 288
            HTGV+++RGLPFSA+K+D++NFFQ   + ED I  V+  DGR TGEA+V FS P  S+
Sbjct:  152 HTGVLKLRGLPFSASKRDIMNFFQDFSLVEDNIHIVLHSDGRATGEAYVEFSGPEVSK 209
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BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: UPI0006AB33F4 (heterogeneous nuclear ribonucleoprotein H3-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB33F4)

HSP 1 Score: 74.3 bits (181), Expect = 1.190e-14
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:  115 HTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAES 285
            HTG++R+RGLPFSA K+D+L+FF+   ++ED+I   V G+GR TG+AFV F S  ES
Sbjct:   16 HTGILRLRGLPFSAGKEDILDFFKDFDLSEDSIHVTVNGEGRPTGDAFVEFGSAEES 72
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BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A5K1EDJ4_9MAGN (RRM domain-containing protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1EDJ4_9MAGN)

HSP 1 Score: 77.4 bits (189), Expect = 1.590e-14
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  115 HTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 288
            HTGV+++RGLPFSATK+D+L+FF+   V+ED +  V   DGR TGEAFV F+S  +S+
Sbjct:  165 HTGVLKLRGLPFSATKEDILDFFKDFEVSEDNVHMVFNSDGRATGEAFVEFASAEDSK 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LML1_ECTSI1.060e-3789.58Heterogeneous nuclear ribonucleoprotein, putative ... [more]
A0A836CJZ5_9STRA9.950e-2473.85RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2V6E7_9STRA1.270e-1866.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U4CVK5_9STRA9.490e-1660.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0K9RJE8_SPIOL2.780e-1553.03Uncharacterized protein n=4 Tax=Chenopodiaceae Tax... [more]
W1NZZ1_AMBTC8.890e-1553.33RRM domain-containing protein n=1 Tax=Amborella tr... [more]
A0A7S3YKW9_HETAK1.010e-1455.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A388KQ92_CHABU1.030e-1456.90Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI0006AB33F41.190e-1456.14heterogeneous nuclear ribonucleoprotein H3-like n=... [more]
A0A5K1EDJ4_9MAGN1.590e-1456.90RRM domain-containing protein (Fragment) n=2 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10656contigEcto-sp13_S_contig10656:353..2875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score134.4
Seed ortholog evalue3.9e-29
Seed eggNOG ortholog2880.D8LML1
Model size411
KEGG koko:K12898,ko:K14947
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0008150,GO:0010468,GO:0019219,GO:0019222,GO:0031323,GO:0043484,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363
Exons4
EggNOG free text desc.regulation of RNA splicing
EggNOG OGsKOG1365@1,KOG1365@2759
Cds size402
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.7642207-UTR-Ecto-sp13_S_contig10656:352..3611681462544.7642207-UTR-Ecto-sp13_S_contig10656:352..361Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10656 353..361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.776072-CDS-Ecto-sp13_S_contig10656:361..5391681462544.776072-CDS-Ecto-sp13_S_contig10656:361..539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10656 362..539 +
1681462544.7855334-CDS-Ecto-sp13_S_contig10656:1118..12191681462544.7855334-CDS-Ecto-sp13_S_contig10656:1118..1219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10656 1119..1219 +
1681462544.7948449-CDS-Ecto-sp13_S_contig10656:1966..20541681462544.7948449-CDS-Ecto-sp13_S_contig10656:1966..2054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10656 1967..2054 +
1681462544.8039331-CDS-Ecto-sp13_S_contig10656:2840..28751681462544.8039331-CDS-Ecto-sp13_S_contig10656:2840..2875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10656 2841..2875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10656.604.1prot_Ecto-sp13_S_contig10656.604.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10656 362..2875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10656.604.1

>prot_Ecto-sp13_S_contig10656.604.1 ID=prot_Ecto-sp13_S_contig10656.604.1|Name=mRNA_Ecto-sp13_S_contig10656.604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MGGMQRPGGGGMGHGSMGGGGAGGLGPDGMAMPVVHTGVIRMRGLPFSAT
KQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESEEREPHGH
PLRGAVRFHPGGDRAAHEQDLRGSFVPRRHIGT*
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mRNA from alignment at Ecto-sp13_S_contig10656:353..2875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10656.604.1 ID=mRNA_Ecto-sp13_S_contig10656.604.1|Name=mRNA_Ecto-sp13_S_contig10656.604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2523bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10656:353..2875+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCAGAACATGGGCGGCATGCAGAGGCCGGGAGGCGGGGGCATGGGCCA
CGGGTCCATGGGTGGAGGTGGAGCGGGGGGTCTCGGCCCGGACGGCATGG
CCATGCCCGTGGTCCACACGGGGGTGATCCGTATGCGAGGTCTCCCTTTC
TCGGCTACAAAGCAAGATGTCCTCAACTTTTTCCAAGGTGCCTGCCTCGC
TCGAGCTAGCGTGCTACGGTAGCATCATAGCTGTATGCTACTCTTGACCG
CAGTTGGAGGAGATTTGTTCTCGGAAAGCTCTTGTAGCGATTGTTTGCTG
TACATGCTTAGCGCCGGCGGAGAGGGCTTTTGATGGGAGCTTTTGACGGG
AGGGTTTCATATGCGCTCTCCTAGTTGCAAGCACTTTGTGCTGCTCTGTG
TTTGCTTTTTCATTGGTTGGACTGTTTTGGTGTTTCGCTATTATTTTCTG
CCTGTTCTCCATGTGACATCCTGCGGTTGTGCATGCTCAACTCAACACCA
GGGTCCCTTCCAGCTCATATTTTCTGTTCGATTGTTTTTGACAAACGCTC
TTGCGGCAACCGTCGTTTCGGTTCGCTCTGCTTTCCTGCAACGCCCTCAC
CGCATCGTGCTTGTGCACGTCTAGTGCCCAGTTTACAAGCGCGTGGATAC
AACGGTGTGAATGATGCATGGCGCGGCGTGGCGTGTTTGATATCGTGGCG
CGATTACCTTATCTCGTTCGCGTCTTGTGTTTTCGGTTTCGTTTCGTGCG
CACCTCAATCGTCCAGGGATGCCGGTCACGGAAGACACCATCCAGTTCGT
GGTCCGCGGTGATGGCAGGGTTACCGGAGAAGCTTTCGTGTCTTTCAGCT
CTCCTGCGGAATCGGAGGTGCGGTTGTGATGTGCGATATCATCCAAGTGA
TGGCACGACGAAGCGCATGGGTGATACATTCGTTTTGTTCTCATAGACTA
AGCACGTATGCGAGAGAAAGGGAAAACAAGTTTCTCGGAGCCGCCGTTCG
GTGTTGTCCATACAGATCCACTCTTTGGCTCGGTCCGCCAGAAGGCGTGT
TGGTTTGTCTCCGCTCTCTCTTGCAGAAATGTACATGTACGTCCTGTGTG
CTAGTGACCCATCTACCGGTGACGTTTGTTGCAGAATTTCGGTTGTCCTT
TCCCTCGTGTGGTTGGCATCGCCTTTGGTTCACCTCACTCGCGCGCTTTC
TCTCTCTCTCTCTCACACACACTCTCTCTGTCTGTCTCTTTATCTAACTC
TCTCCCTTTCTCTCTCTCCCCCTCTCTCTCTCTCTCTCTTTCTCTCTCTC
TCTCTCTCTTTCTCTCTCTCACACACGCAAGTGATGTGTGACCATTTGCT
GTACTCGTGCTCGCATCATGCCTTGTGCGTGTTTCGTGTCCTTGGATATT
CCGTCTTGGATTAGACTGCTGTCACGCACACCACATCTTGCTCTCGACAT
TGGTGCTCACGAGGGTGTCCCACGCCCATGACTTGCTCGCCGTATTTTTT
GTTCTCATCCTCGAGTACCGTGCTGTTTCGATTCTTCGATGCTTGTGCGG
TTGCCGGTATTCACTCTGATCCTCACCTCCAATTGATCGTGTAAGAAAAG
GCCGCCATGTCAAGGAACGGGAACCACATGGGCACCCGCTACGTGGAGCT
GTTCGCTTCCACCCCGGAGGAGATCGTGCGGCACATGAACAGGACCTAAG
AGGTGCAGCAACGAAAGCGAAATCCATGCAAGGAAGAAAGATGCTGGTGC
AGTTTTCTTCCGTCCATGAGTTTGCCGTGCTTGGACAGCACACTCTCAGT
CGGTCGGTCTGTCTGTGTGTCTCTCTCTCTTTTGCCTCTCTCTCATTTCG
TGGCGTCTTGTTTGAGGGAAAACGCATGAGCTTGTCGGTTGTATGTATCT
CTTAGGTACTGCTGTCGTGCGTGTCGGTGATTTGGTGTGTCCGCGGTCTC
GAGTGGGCCCCGTGTTTCTCTATTCGCTGTCTATCTGTCTGCCCGCTTTC
GACCGAACGCAGGCGCGTTTTGTTTTGCTGTGCTGTGTTGTGTTGTGTTG
TGTTCTGTTGTGTCGGGGGCACTCGGGGAGTGATCCTTACCCGTGTCAGA
GGGCGAGGCACCGCCGTTTAACCATACTCATTTTTGTCCAAGCTCAGCAT
GCCAGCAGCCTCACACGCTCTTCCCCCCCCCCCCCACATCGCCGCTTTCT
CAGAAGCATCTTTCAGAAGCACCTAAGACACTGGTGCATGTAGAAGTATA
TTTGTTGTAGTCTAAGAACGATGGTCCGCCTCCAAGAGGATGCGGACGGT
CAACCCGTAAAAGATGGCTGGGCTAACCAAATCACCCCGCCCCCTCCTCT
GGCCTATCGCTCCGCGATGGCATCAATAGTGTCACGACGACAGCATGATC
GACATGAGTACACCCTCCCTCTGTGTCGACGTTTTCTCTTCCCCGCGCCC
CCCTTTCGCTCACCCACGATCACATCCCTCCGCCGCAGGCTCCTTTGTGC
CTCGGCGGCACATTGGGACGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10656:353..2875+

>mRNA_Ecto-sp13_S_contig10656.604.1 ID=mRNA_Ecto-sp13_S_contig10656.604.1|Name=mRNA_Ecto-sp13_S_contig10656.604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10656:353..2875+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGGCATGCAGAGGCCGGGAGGCGGGGGCATGGGCCACGGGTCCAT
GGGTGGAGGTGGAGCGGGGGGTCTCGGCCCGGACGGCATGGCCATGCCCG
TGGTCCACACGGGGGTGATCCGTATGCGAGGTCTCCCTTTCTCGGCTACA
AAGCAAGATGTCCTCAACTTTTTCCAAGGGATGCCGGTCACGGAAGACAC
CATCCAGTTCGTGGTCCGCGGTGATGGCAGGGTTACCGGAGAAGCTTTCG
TGTCTTTCAGCTCTCCTGCGGAATCGGAGGAACGGGAACCACATGGGCAC
CCGCTACGTGGAGCTGTTCGCTTCCACCCCGGAGGAGATCGTGCGGCACA
TGAACAGGACCTAAGAGGCTCCTTTGTGCCTCGGCGGCACATTGGGACGT
AG
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