prot_Ecto-sp13_S_contig10656.604.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10656.604.1
Unique Nameprot_Ecto-sp13_S_contig10656.604.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length134
Homology
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 4.140e-36
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0
Query:   28 DGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 93
            DGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE
Sbjct:  208 DGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 273          
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.950e-24
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 0
Query:   29 GMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 93
            G A    HTGVIRMRGLPFSATK DV+NFFQG+ V ++++QFVVRGDGRVTGEAFV+ SSPAE+E
Sbjct:  128 GQAGTAEHTGVIRMRGLPFSATKADVVNFFQGLNVLDESVQFVVRGDGRVTGEAFVTLSSPAEAE 192          
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A7S2V6E7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.150e-18
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 0
Query:   36 HTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSP 89
            HTG++R+RGLPFSA+K DVL+FF G  + ED+I+FVVR DGRVTGE++V F+SP
Sbjct:   23 HTGILRLRGLPFSASKADVLHFFDGYEIVEDSIEFVVRADGRVTGESYVQFTSP 76          
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A6U4CVK5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CVK5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.630e-16
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   37 TGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESEE 94
            T V+RMRGLPFSA++ DV+ FF+ + V ED+I+F  R DGRVTGEA+V F SPA + E
Sbjct:   14 TTVLRMRGLPFSASRSDVVGFFRDLEVIEDSIKFATRSDGRVTGEAYVEFDSPATAAE 71          
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A0K9RJE8_SPIOL (Uncharacterized protein n=4 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9RJE8_SPIOL)

HSP 1 Score: 80.9 bits (198), Expect = 2.520e-15
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 0
Query:   28 DGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 93
            D +  PV HTGV+++RGLPFSATK++++ FF G  +TED++      DGR TGEAFV F+ P +SE
Sbjct:  282 DDLNEPVKHTGVLKLRGLPFSATKEEIIEFFNGFVLTEDSVHITSMPDGRPTGEAFVEFAGPEDSE 347          
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: W1NZZ1_AMBTC (RRM domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NZZ1_AMBTC)

HSP 1 Score: 78.2 bits (191), Expect = 8.070e-15
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 0
Query:   34 VVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 93
            V HTGV+++RGLPFSATK+D++ FF+   ++ED I  ++  +GR TGEAFV F+SP +S+
Sbjct:  168 VEHTGVLKLRGLPFSATKEDIIEFFKEFDISEDNITLMINSEGRATGEAFVEFASPEDSK 227          
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A7S3YKW9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKW9_HETAK)

HSP 1 Score: 74.7 bits (182), Expect = 9.160e-15
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   36 HTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 93
            HTG +R+RG PF+ATK+DVL FF+G PV ED+I+FV R DG++TGE +V   S  +++
Sbjct:   23 HTGYLRLRGCPFTATKRDVLGFFRGHPVVEDSIEFVRRADGKMTGEVYVRLPSAEDAK 80          
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A388KQ92_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KQ92_CHABU)

HSP 1 Score: 77.8 bits (190), Expect = 9.350e-15
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 0
Query:   36 HTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 93
            HTGV+++RGLPFSA+K+D++NFFQ   + ED I  V+  DGR TGEA+V FS P  S+
Sbjct:  152 HTGVLKLRGLPFSASKRDIMNFFQDFSLVEDNIHIVLHSDGRATGEAYVEFSGPEVSK 209          
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: UPI0006AB33F4 (heterogeneous nuclear ribonucleoprotein H3-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB33F4)

HSP 1 Score: 74.3 bits (181), Expect = 1.080e-14
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 0
Query:   36 HTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAES 92
            HTG++R+RGLPFSA K+D+L+FF+   ++ED+I   V G+GR TG+AFV F S  ES
Sbjct:   16 HTGILRLRGLPFSAGKEDILDFFKDFDLSEDSIHVTVNGEGRPTGDAFVEFGSAEES 72          
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Match: A0A5K1EDJ4_9MAGN (RRM domain-containing protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1EDJ4_9MAGN)

HSP 1 Score: 77.4 bits (189), Expect = 1.450e-14
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   36 HTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE 93
            HTGV+++RGLPFSATK+D+L+FF+   V+ED +  V   DGR TGEAFV F+S  +S+
Sbjct:  165 HTGVLKLRGLPFSATKEDILDFFKDFEVSEDNVHMVFNSDGRATGEAFVEFASAEDSK 222          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10656.604.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LML1_ECTSI4.140e-36100.00Heterogeneous nuclear ribonucleoprotein, putative ... [more]
A0A836CJZ5_9STRA8.950e-2473.85RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2V6E7_9STRA1.150e-1866.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U4CVK5_9STRA8.630e-1660.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0K9RJE8_SPIOL2.520e-1553.03Uncharacterized protein n=4 Tax=Chenopodiaceae Tax... [more]
W1NZZ1_AMBTC8.070e-1553.33RRM domain-containing protein n=1 Tax=Amborella tr... [more]
A0A7S3YKW9_HETAK9.160e-1555.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A388KQ92_CHABU9.350e-1556.90Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI0006AB33F41.080e-1456.14heterogeneous nuclear ribonucleoprotein H3-like n=... [more]
A0A5K1EDJ4_9MAGN1.450e-1456.90RRM domain-containing protein (Fragment) n=2 Tax=N... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 33..105
e-value: 3.2E-16
score: 61.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 40..93
e-value: 2.6E-4
score: 20.7
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 8..93
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 25..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10656contigEcto-sp13_S_contig10656:362..2875 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10656.604.1mRNA_Ecto-sp13_S_contig10656.604.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10656 353..2875 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10656.604.1 ID=prot_Ecto-sp13_S_contig10656.604.1|Name=mRNA_Ecto-sp13_S_contig10656.604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MGGMQRPGGGGMGHGSMGGGGAGGLGPDGMAMPVVHTGVIRMRGLPFSAT
KQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESEEREPHGH
PLRGAVRFHPGGDRAAHEQDLRGSFVPRRHIGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf