mRNA_Ecto-sp13_S_contig19033.6045.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19033.6045.1
Unique NamemRNA_Ecto-sp13_S_contig19033.6045.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19033.6045.1 vs. uniprot
Match: D7FJ96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ96_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 9.900e-90
Identity = 157/199 (78.89%), Postives = 164/199 (82.41%), Query Frame = 1 
Query:    1 RRPKANNEGGRSTNGPSPCAPNDEANCTAETIGEGFEEEAVSAHGSVSKLGHNRHKGREAGATTRLRQSPGTRTAKSSRPYPSSRSPLRGRARTSPSASERQEKISKHLFNSISQSRAVAEDAGDARAGGWTLDTMLYVGRSGASGRGKVGGEEEDCAGGVGQGSQKIALHRGLVITEELRKEILNPLAHRFKLLRRAH 597
            RRPKANNEGG STN   P  PNDEA CT ET+GE F+EE VSAHGSVS  G+  +KGREAGATTRLRQSP    AKSSRP PSSRSPLRGR   SP+AS  QEKI K LFN IS SRAVAEDAGDARAG WT DTM YVGRSG SGRGK+GGEEED AGGVGQGSQ +ALHRGLVITEELRKEILNPLA RFKLLRRAH
Sbjct:  166 RRPKANNEGGCSTNRAPPHEPNDEAICTTETLGERFDEEGVSAHGSVSGSGYKGYKGREAGATTRLRQSPDRGKAKSSRPCPSSRSPLRGRV--SPNASRPQEKIRKDLFNGISHSRAVAEDAGDARAGEWTPDTMFYVGRSGVSGRGKIGGEEEDSAGGVGQGSQNVALHRGLVITEELRKEILNPLAQRFKLLRRAH 362
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19033.6045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ96_ECTSI9.900e-9078.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19033contigEcto-sp13_S_contig19033:217..1059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size600
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_008350.1
Cds size600
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.9185886-CDS-Ecto-sp13_S_contig19033:216..4201681462970.9185886-CDS-Ecto-sp13_S_contig19033:216..420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19033 217..420 +
1681462970.9302063-CDS-Ecto-sp13_S_contig19033:663..10591681462970.9302063-CDS-Ecto-sp13_S_contig19033:663..1059Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19033 664..1059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19033.6045.1prot_Ecto-sp13_S_contig19033.6045.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19033 217..1059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19033.6045.1

>prot_Ecto-sp13_S_contig19033.6045.1 ID=prot_Ecto-sp13_S_contig19033.6045.1|Name=mRNA_Ecto-sp13_S_contig19033.6045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
RRPKANNEGGRSTNGPSPCAPNDEANCTAETIGEGFEEEAVSAHGSVSKL
GHNRHKGREAGATTRLRQSPGTRTAKSSRPYPSSRSPLRGRARTSPSASE
RQEKISKHLFNSISQSRAVAEDAGDARAGGWTLDTMLYVGRSGASGRGKV
GGEEEDCAGGVGQGSQKIALHRGLVITEELRKEILNPLAHRFKLLRRAH*
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mRNA from alignment at Ecto-sp13_S_contig19033:217..1059+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19033.6045.1 ID=mRNA_Ecto-sp13_S_contig19033.6045.1|Name=mRNA_Ecto-sp13_S_contig19033.6045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19033:217..1059+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACGACCTAAGGCCAACAACGAAGGCGGGCGCTCGACTAACGGGCCTTC
TCCTTGTGCGCCCAACGATGAGGCAAATTGTACCGCGGAAACAATCGGTG
AGGGTTTCGAAGAGGAGGCCGTTTCCGCGCATGGCAGTGTGTCAAAATTG
GGACACAACAGGCACAAAGGCCGGGAGGCGGGAGCAACGACGCGGTTGCG
CCAGGTGAGGCTCTGGCGAGATACAGCACTGCAGTAGTCTTGGTTTTCTG
GCGGGTTTGCCAAACAGTTCCTGCCCGAAGTCCCATCGATTATTTTTCGA
CCGGTTGACATTTCCCTGGCCTGATAACAGGGGTGTAGAAACCAAATGGC
CAAGCTACGCGGCCCTAAAACAAGGAATGGCTCAGACCATGCTGGACTCG
CGTGACACGTTTCCGTCCGCGTGGCCTCTCCGCCTCCTTTCGAACAGTCC
CCTGGCACGCGTACGGCGAAATCGTCAAGGCCTTACCCGTCATCCCGATC
ACCGCTGAGAGGTAGGGCAAGGACATCTCCTAGTGCATCCGAGCGCCAGG
AAAAGATCAGCAAGCATCTCTTCAACAGCATTTCGCAGAGCCGAGCAGTT
GCCGAAGATGCTGGTGACGCTAGAGCAGGGGGGTGGACACTGGATACCAT
GTTGTACGTGGGTCGCAGCGGTGCGTCGGGAAGAGGGAAGGTTGGTGGGG
AGGAAGAGGATTGCGCCGGAGGGGTGGGCCAGGGCAGCCAGAAGATTGCC
CTCCATCGAGGGCTGGTGATCACCGAGGAACTACGGAAAGAGATCTTGAA
CCCACTGGCACACAGGTTCAAGTTGTTGCGACGGGCCCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19033:217..1059+

>mRNA_Ecto-sp13_S_contig19033.6045.1 ID=mRNA_Ecto-sp13_S_contig19033.6045.1|Name=mRNA_Ecto-sp13_S_contig19033.6045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19033:217..1059+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACGACCTAAGGCCAACAACGAAGGCGGGCGCTCGACTAACGGGCCTTC
TCCTTGTGCGCCCAACGATGAGGCAAATTGTACCGCGGAAACAATCGGTG
AGGGTTTCGAAGAGGAGGCCGTTTCCGCGCATGGCAGTGTGTCAAAATTG
GGACACAACAGGCACAAAGGCCGGGAGGCGGGAGCAACGACGCGGTTGCG
CCAGTCCCCTGGCACGCGTACGGCGAAATCGTCAAGGCCTTACCCGTCAT
CCCGATCACCGCTGAGAGGTAGGGCAAGGACATCTCCTAGTGCATCCGAG
CGCCAGGAAAAGATCAGCAAGCATCTCTTCAACAGCATTTCGCAGAGCCG
AGCAGTTGCCGAAGATGCTGGTGACGCTAGAGCAGGGGGGTGGACACTGG
ATACCATGTTGTACGTGGGTCGCAGCGGTGCGTCGGGAAGAGGGAAGGTT
GGTGGGGAGGAAGAGGATTGCGCCGGAGGGGTGGGCCAGGGCAGCCAGAA
GATTGCCCTCCATCGAGGGCTGGTGATCACCGAGGAACTACGGAAAGAGA
TCTTGAACCCACTGGCACACAGGTTCAAGTTGTTGCGACGGGCCCACTGA
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