mRNA_Ecto-sp13_S_contig19013.6035.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19013.6035.1
Unique NamemRNA_Ecto-sp13_S_contig19013.6035.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19013.6035.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.740e-27
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 1 
Query:  178 VNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYCGSAVTDAAVASFARGCRRLRR 498
            VNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GSAVTDAAVASFARGCRRLRR
Sbjct:  344 VNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVTDAAVASFARGCRRLRR 450
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19013.6035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPS0_ECTSI3.740e-2797.20Hypothetical leucine rich repeat calmodulin bindin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19013contigEcto-sp13_S_contig19013:1..1817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score117.5
Seed ortholog evalue6.1e-24
Seed eggNOG ortholog2880.D8LPS0
Model size498
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG1947@1,KOG1947@2759,KOG4341@1,KOG4341@2759
Cds size498
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.3057158-CDS-Ecto-sp13_S_contig19013:0..671681462970.3057158-CDS-Ecto-sp13_S_contig19013:0..67Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19013 1..67 -
1681462970.3275151-CDS-Ecto-sp13_S_contig19013:795..9981681462970.3275151-CDS-Ecto-sp13_S_contig19013:795..998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19013 796..998 -
1681462970.341033-CDS-Ecto-sp13_S_contig19013:1589..18171681462970.341033-CDS-Ecto-sp13_S_contig19013:1589..1817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19013 1590..1817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19013.6035.1prot_Ecto-sp13_S_contig19013.6035.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19013 1..1817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19013.6035.1

>prot_Ecto-sp13_S_contig19013.6035.1 ID=prot_Ecto-sp13_S_contig19013.6035.1|Name=mRNA_Ecto-sp13_S_contig19013.6035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
MNLVAGRLKVSNAGVTSLCERCPLLEHLEMASLKHVTDIGVARLGSSCTR
LTHLDLSGIVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTA
LRSVGGGLRSLKRLSLARCPGLSQEGMAAVAKGCPNLTELNLPYCGSAVT
DAAVASFARGCRRLRR
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mRNA from alignment at Ecto-sp13_S_contig19013:1..1817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19013.6035.1 ID=mRNA_Ecto-sp13_S_contig19013.6035.1|Name=mRNA_Ecto-sp13_S_contig19013.6035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1817bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19013:1..1817- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTTGGTTGCTGGACGCCTCAAGGTTTCCAATGCGGGAGTCACAAG
CCTCTGCGAGAGGTGCCCCCTGCTCGAGCATCTCGAGATGGCGTCCCTGA
AGCACGTCACCGACATCGGCGTGGCCAGGCTCGGTAGCTCGTGCACGAGG
CTGACACACCTGGACTTGTCCGGGATCGTCAACCTTTCCGACGGCATGCA
GAGAGACTTCGCCCTCACGGGGGTCCAGGTGATGACCCGTCACGCAACGT
GCACGCCTGCTCAACCGCCTGACAACGTCTTCTGTCGTTTCGTCTGGCTG
TGCCTTGATCTGCCGCCGAAGGGAGGGGAAACACGGATTGTTTCGCGGCA
AATCGGGGTGTGCCTGCCGTTTGAGAACATAATTCCGCTCGTCTCTATTA
GTTTTTTGTTTGGATGGCGTACAAAGGTTTTTTTTTGCCCGCTACGAGGG
CCCCAACGTTCTTCCTTGTTCGCGAGCATGGTGAAAGACCTCGGGAGTTC
TTTGGAGTTAGTGCTCCTGTAGCCGGCAACAGCGCCGTCGCTGACGGTTC
CGCCAACGAAAAAGCAACTTCTCCTAACAAGTTCTGTGGTGCGTGCCATG
TGGGCACCCTGTACAAGTAATTTGGAACAACACAAACCCGCTACTCTGTG
CGAACAGCCAGTCTTCTCCCTTAAGTGAGGCTTGTTCTTTGTCCGCCCAA
AATTGTCCGCATTGCGCTACGCTCGTGGGCGTAGCCCCCGTCTCGTGAAA
AAAACGGAGCTCTATGCACATACTGATTTCTCGAACTTGAAAACCAACGG
TCGACGACAAAACAACCAGGCACTCGCAAAAGGCTGCACAGGACTGCAAA
CGCTAGTCCTAGACGGGTGCTTCCAGATCTCCAAGACCGCGCTCCGGTCT
GTGGGCGGCGGGCTGCGCTCACTCAAGCGGCTGTCTCTGGCCCGGTGTCC
GGGTCTTTCCCAGGAAGGCATGGCTGCTGTGGCGAAAGGTTGCCCAAACT
TGACGGAACTGAACCTCCCTTAGTGAGTGGTATTGGTATTGTAAACAAGT
TTCGCTGGAACGTGGAGGGATATAGCTCAGACAGATGTATTGGGGGAGTA
CCCCATCTTTGTTTATTGTGTCACTCCCTTCGCGGGAGAGGGTGAGGCTG
GGCAGTGGATGAGAGGCAGAGAGTAACAGTGTGCGATTCTGGTCAGAAAC
GTTGGTGTTAATTTCGCTGGGGTGCATGCTCGGAGTACATCTAGTTGGCA
TTTCGATTCGTTTTACTTCTCTATTGATGCTCGTGGTATCGAGTGAATAA
ATTCCGCTACTAGATAGTTCCGTTGAGTAGTCTAGAACAGAGTCCATAGC
AGTGTATCGGCTTCCCCACTATCCAAAGTGCCTCTCAATATCATCAACAG
GGGTGGCAGCGAAGACATCACGTACATTGTTTTTGGCGTGTTTGGTACGC
GTACCCCACCTATCTGCTGTTTGCGTTGTAACACCAAGCACAAAGAGGGT
AATACACGTCTGGTGAGACGCGCAAGATAAGATAAGCTAGAAAGGTGGGC
GTTGGGTCGGCAGTGGGGAAAAGCATCCAGCGCGGCACTGCTGCTATCGT
AGTACAGATCAGAGCAGGAGTGCCACCACACACTCGGCAAGACAGCCTTC
CTTCAAAACCTACCTCAACCGCCACGTTTATCCCGAAAGTACAATATTAA
ATGATGAAAAGCGTACCTTGACACCGAGTCGTCGCTACGGTCGGTTGCAG
TTGCGGGAGCGCAGTGACCGACGCTGCCGTTGCATCGTTCGCGAGGGGTT
GTCGACGCCTTCGAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19013:1..1817-

>mRNA_Ecto-sp13_S_contig19013.6035.1 ID=mRNA_Ecto-sp13_S_contig19013.6035.1|Name=mRNA_Ecto-sp13_S_contig19013.6035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19013:1..1817- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACTTGGTTGCTGGACGCCTCAAGGTTTCCAATGCGGGAGTCACAAG
CCTCTGCGAGAGGTGCCCCCTGCTCGAGCATCTCGAGATGGCGTCCCTGA
AGCACGTCACCGACATCGGCGTGGCCAGGCTCGGTAGCTCGTGCACGAGG
CTGACACACCTGGACTTGTCCGGGATCGTCAACCTTTCCGACGGCATGCA
GAGAGACTTCGCCCTCACGGGGGTCCAGGCACTCGCAAAAGGCTGCACAG
GACTGCAAACGCTAGTCCTAGACGGGTGCTTCCAGATCTCCAAGACCGCG
CTCCGGTCTGTGGGCGGCGGGCTGCGCTCACTCAAGCGGCTGTCTCTGGC
CCGGTGTCCGGGTCTTTCCCAGGAAGGCATGGCTGCTGTGGCGAAAGGTT
GCCCAAACTTGACGGAACTGAACCTCCCTTATTGCGGGAGCGCAGTGACC
GACGCTGCCGTTGCATCGTTCGCGAGGGGTTGTCGACGCCTTCGAAGG
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