prot_Ecto-sp13_S_contig19013.6035.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19013.6035.1
Unique Nameprot_Ecto-sp13_S_contig19013.6035.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length166
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19013.6035.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.740e-27
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 0 
Query:   60 VNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYCGSAVTDAAVASFARGCRRLRR 166
            VNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GSAVTDAAVASFARGCRRLRR
Sbjct:  344 VNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVTDAAVASFARGCRRLRR 450
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19013.6035.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPS0_ECTSI3.740e-2797.20Hypothetical leucine rich repeat calmodulin bindin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 48..81
e-value: 0.016
score: 24.3
coord: 134..160
e-value: 7.4E-4
score: 28.8
coord: 82..107
e-value: 0.55
score: 19.3
coord: 22..47
e-value: 0.02
score: 24.1
coord: 108..133
e-value: 0.0074
score: 25.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..166
e-value: 2.4E-36
score: 127.1
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 9..64
coord: 73..166
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 9..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19013contigEcto-sp13_S_contig19013:1..1817 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19013.6035.1mRNA_Ecto-sp13_S_contig19013.6035.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19013 1..1817 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19013.6035.1 ID=prot_Ecto-sp13_S_contig19013.6035.1|Name=mRNA_Ecto-sp13_S_contig19013.6035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
MNLVAGRLKVSNAGVTSLCERCPLLEHLEMASLKHVTDIGVARLGSSCTR
LTHLDLSGIVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTA
LRSVGGGLRSLKRLSLARCPGLSQEGMAAVAKGCPNLTELNLPYCGSAVT
DAAVASFARGCRRLRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf