mRNA_Ecto-sp13_S_contig1901.6033.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1901.6033.1
Unique NamemRNA_Ecto-sp13_S_contig1901.6033.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1901.6033.1 vs. uniprot
Match: D8LNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.430e-17
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 MLLIRGLSLLAVGIAAAPIGCALVPPTPLPRTSAGGHAAATARGKH 138
            MLL+RGLSLLAVG+AAAP GCALVPPTPLPRT+AGGHAAATARGKH
Sbjct:    1 MLLVRGLSLLAVGLAAAPTGCALVPPTPLPRTTAGGHAAATARGKH 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1901.6033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNI5_ECTSI5.430e-1791.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1901contigEcto-sp13_S_contig1901:5674..5811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score81.6
Seed ortholog evalue1e-13
Seed eggNOG ortholog2880.D8LNI5
Model size138
KEGG koko:K09660
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.dolichol-linked oligosaccharide biosynthetic process
EggNOG OGsKOG3211@1,KOG3211@2759
Cds size138
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462970.1641903-CDS-Ecto-sp13_S_contig1901:5673..58111681462970.1641903-CDS-Ecto-sp13_S_contig1901:5673..5811Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1901 5674..5811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1901.6033.1prot_Ecto-sp13_S_contig1901.6033.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1901 5674..5811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1901.6033.1

>prot_Ecto-sp13_S_contig1901.6033.1 ID=prot_Ecto-sp13_S_contig1901.6033.1|Name=mRNA_Ecto-sp13_S_contig1901.6033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
MLLIRGLSLLAVGIAAAPIGCALVPPTPLPRTSAGGHAAATARGKH
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mRNA from alignment at Ecto-sp13_S_contig1901:5674..5811-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1901.6033.1 ID=mRNA_Ecto-sp13_S_contig1901.6033.1|Name=mRNA_Ecto-sp13_S_contig1901.6033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1901:5674..5811- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGCTCATTCGAGGCCTGTCCTTGCTGGCTGTCGGAATCGCGGCGGC
ACCGATCGGCTGTGCGCTTGTCCCGCCCACGCCGCTGCCTCGGACCTCAG
CGGGAGGGCACGCTGCTGCGACTGCGAGAGGCAAACAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1901:5674..5811-

>mRNA_Ecto-sp13_S_contig1901.6033.1 ID=mRNA_Ecto-sp13_S_contig1901.6033.1|Name=mRNA_Ecto-sp13_S_contig1901.6033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1901:5674..5811- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGCTCATTCGAGGCCTGTCCTTGCTGGCTGTCGGAATCGCGGCGGC
ACCGATCGGCTGTGCGCTTGTCCCGCCCACGCCGCTGCCTCGGACCTCAG
CGGGAGGGCACGCTGCTGCGACTGCGAGAGGCAAACAT
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