mRNA_Ecto-sp13_S_contig1901.6032.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1901.6032.1 vs. uniprot
Match: D8LNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI5_ECTSI) HSP 1 Score: 373 bits (957), Expect = 8.010e-128 Identity = 195/228 (85.53%), Postives = 201/228 (88.16%), Query Frame = 1
Query: 16 LRQIASWRGGAVEGSEGGPPLMNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEGEVAVSNGXXXXXXXXXXXXXXXXXXXTPAGGGPLGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTIAVRGG 699
+RQIASWRGGAVE SEGGPPLMN QLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLK+NPIRAYGESVVVLFQTLVMVGLLWRFG E EVAVS+G PAGGGP+GRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELA+LTVLLAF GSS+RIATTIA GG
Sbjct: 47 VRQIASWRGGAVESSEGGPPLMNVQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKKNPIRAYGESVVVLFQTLVMVGLLWRFGAEEEVAVSDGGGDEEALVTKSTKKVK----PAGGGPVGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAVLTVLLAFVGSSIRIATTIADLGG 270
BLAST of mRNA_Ecto-sp13_S_contig1901.6032.1 vs. uniprot
Match: A0A6H5K508_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K508_9PHAE) HSP 1 Score: 342 bits (877), Expect = 1.290e-116 Identity = 188/207 (90.82%), Postives = 190/207 (91.79%), Query Frame = 1
Query: 79 MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEGEVAVSNGXXXXXXXXXXXXXXXXXXXTPAGGGPLGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTIAVRGG 699
MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTE EVAVS+GXXXXXXXX PAGGGPLGRTAI GSVAASVLCVLYLPERLWGLLV+VSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTIA GG
Sbjct: 1 MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGXXXXXXXXALVTKSIKKVK-PAGGGPLGRTAIAVGSVAASVLCVLYLPERLWGLLVVVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTIADLGG 206
BLAST of mRNA_Ecto-sp13_S_contig1901.6032.1 vs. uniprot
Match: A0A7S1C7W5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7W5_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.930e-18 Identity = 66/217 (30.41%), Postives = 98/217 (45.16%), Query Frame = 1
Query: 97 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEGEVAVSNGXXXXXXXXXXXXXXXXXXXTPAGGGPLGRTAIVAGSVAASVLCVLYL---------------------PERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTI 684
L R I AGSL LK PQ A++ A + GL+P+S+Y +V F T+ + + +YGESV +L Q +++V LLW + EG PLG V + AA V V+YL P+ + GL P +L Q+W N++Q HTG+LA++TVLL F G++ R+ T++
Sbjct: 84 LSRFLSLAITAGSLTLKAPQAAKIMAAGNAEGLSPSSMYLEVATFLTASVTSYANGYTLASYGESVSILIQNILLVFLLWHY--EGAKH-----------------------------PLGERVGVLAACAAWVAPVVYLYATHGEAWETAAGVPQWLRMYPDIILGL----GIPLTAVARLSQVWANFKQGHTGQLALVTVLLNFAGAAARVFTSL 265
BLAST of mRNA_Ecto-sp13_S_contig1901.6032.1 vs. uniprot
Match: A0E4V5_PARTE (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0E4V5_PARTE) HSP 1 Score: 90.9 bits (224), Expect = 2.550e-18 Identity = 58/190 (30.53%), Postives = 94/190 (49.47%), Query Frame = 1
Query: 115 YGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEGEVAVSNGXXXXXXXXXXXXXXXXXXXTPAGGGPLGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTI 684
Y I+A S+ LK PQI ++ + GL+ SI+ ++F+++ S+ Y+V K NP + Y E+V +LFQT+++V L + E + R AI G L +P ++ L +I++ IL +LPQIW N+R K TG+LA +T+ L F G++ R T +
Sbjct: 64 YSIVALSVILKAPQIFKIVQKSKVTGLSFDSIFFELFVYSFSIAYNVHKGNPWKLYAENVAILFQTVIIVALFKVY--EKSFTLRQFYL--------------------------RIAIFLG--VNLPLFTGLIPNSIFNLAIIINICLILFARLPQIWSNFRNKDTGQLAFITIFLQFAGAAARCFTIL 223
BLAST of mRNA_Ecto-sp13_S_contig1901.6032.1 vs. uniprot
Match: A0A2R5GIZ9_9STRA (Mannose-P-dolichol utilization defect 1 protein-like 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIZ9_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.340e-16 Identity = 61/197 (30.96%), Postives = 99/197 (50.25%), Query Frame = 1
Query: 103 RVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEG---EVAVSNGXXXXXXXXXXXXXXXXXXXTPAGGGPLGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTI 684
+V G +I GS +K PQIA + AK++ GL+ Y + +V Y + ++P ++G+S+ VL Q L++VGL+W +G +VA+S LG V G+VA+ L PE+LW L ++S+ L+ +PQI +N+ +HTG L+ +T L+ F G R+ TT+
Sbjct: 274 KVLGAVLITGSFGVKVPQIASIMDAKTVKGLSSVKSYTAIQALVLTVAYSLANKHPFTSWGDSLSVLIQELIIVGLMWTYGETSLITQVALS----------------------------LGFLGFV-GTVASFTLNTR--PEKLWAL-PLLSSVISLSGTIPQIIENFNNQHTGALSFVTQLMVFLGVVARVFTTL 438
BLAST of mRNA_Ecto-sp13_S_contig1901.6032.1 vs. uniprot
Match: A0A8J2AI14_9DINO (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2AI14_9DINO) HSP 1 Score: 82.4 bits (202), Expect = 2.250e-15 Identity = 57/201 (28.36%), Postives = 92/201 (45.77%), Query Frame = 1
Query: 91 LGLVRVA-GYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEGEVAVSNGXXXXXXXXXXXXXXXXXXXTPAGGGPLGRTAIVAGSVAASVLCV--LYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTI 684
+GLV A + GS+ LK PQI R+W +S+ G+A + + S Y LK P +GES + QTL+ VGL W+F + ++ P I+ VL + L + + + ++ + A ++PQIW+N+ Q HTG L+++T +LA+ G VR+ATT+
Sbjct: 16 VGLVMQALNVATLMGSIGLKAPQIFRIWKLRSVTGIAETMVITEALNSGLSTTYAFLKGFPFGTWGESAFIWVQTLMQVGLFWKFSPKLDLF-----------------------------PRYLAGIIYVLTFVVVLNHGHILLDDFVIDTIGLIPSGLGTASKIPQIWRNYSQGHTGTLSLITWMLAWAGCVVRVATTV 187
BLAST of mRNA_Ecto-sp13_S_contig1901.6032.1 vs. uniprot
Match: L8GRK2_ACACA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GRK2_ACACA) HSP 1 Score: 81.3 bits (199), Expect = 9.190e-15 Identity = 57/196 (29.08%), Postives = 86/196 (43.88%), Query Frame = 1
Query: 97 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEGEVAVSNGXXXXXXXXXXXXXXXXXXXTPAGGGPLGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTI 684
L + +G++AGSL K PQI +V +++S GLA + ++ S Y K P YGESV V L+++ + F G G G I A L ++P ++ TP ++A +LPQIW+++R K TG+L+ +T L FGGS RI TT+
Sbjct: 34 LSKFLSFGVVAGSLVYKLPQILKVQNSRSAKGLAMLGVLLELLSVTISFSYSYSKGFPFMTYGESVFVAGANLLIICQILSFEHGGV------------------------------GFQGLAGIALYGAAVYALLGGFVPFSALQIMQGCVTPIVIASRLPQIWESYRNKSTGQLSFITWFLNFGGSLARIFTTL 199
BLAST of mRNA_Ecto-sp13_S_contig1901.6032.1 vs. uniprot
Match: A0A6U3U4X2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3U4X2_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.760e-14 Identity = 47/174 (27.01%), Postives = 83/174 (47.70%), Query Frame = 1
Query: 166 VWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEGEVAVSNGXXXXXXXXXXXXXXXXXXXTPAGGGPLGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQL-PQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTI 684
++ +KS +GL+P S Y +V +++ + Y++ + NP AYGE+ +V+ QT+V+V ++WR+G E + GG +V G+ + V Y+ + +++V P +L QI N +QK TG ++ T + GS +R TTI
Sbjct: 5 IYSSKSALGLSPTSTYGEVIMYSNAAFYNLRRGNPFTAYGETFMVMVQTVVVVLMIWRYGEEKK-----------------------------GGRTNNVGVVCGAYLVYLFVVFYVLTQDTIYILMVYNPIVLLTSRGSQILANHQQKQTGAQSLATTGMNLTGSLIRTVTTI 149
BLAST of mRNA_Ecto-sp13_S_contig1901.6032.1 vs. uniprot
Match: A0A836CGJ2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ2_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 6.370e-14 Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 85 AQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRF 342
A++ ++AG GII GS+ +K PQI R+ A+S++GL+ + Y +V L + VIYH K P AYGE+ +L Q L++V L+WR+
Sbjct: 45 ARVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRY 130
BLAST of mRNA_Ecto-sp13_S_contig1901.6032.1 vs. uniprot
Match: I7LU15_TETTS (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7LU15_TETTS) HSP 1 Score: 78.6 bits (192), Expect = 9.840e-14 Identity = 52/196 (26.53%), Postives = 91/196 (46.43%), Query Frame = 1
Query: 97 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEGEVAVSNGXXXXXXXXXXXXXXXXXXXTPAGGGPLGRTAIVAGSVAASVLCVLYLPERLWGLLVIVSTPTILAVQLPQIWKNWRQKHTGELAMLTVLLAFGGSSVRIATTI 684
L ++ G I+ S LK PQI ++ KS+ GL+ ++ ++ FL+ +V Y++ K+N YGE+V ++ Q ++++ L + +G + L T IV G VA +L + P +L+ +I++ + PQI+ N++ K TG+LA TV L G R T +
Sbjct: 57 LSKILGTSIVVFSTILKVPQILKIVKNKSVEGLSFPALASETFLYFFTVSYNLYKQNSFSLYGENVFIIIQNIIIMALFYVYGKNFSLV-----------------------------KLLSTYIVFGVVAGPLLLQIA-PTKLYDFAMIINMVLFFFGRAPQIYSNFKNKSTGQLAAFTVFLNLSGCIARTFTVL 222 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1901.6032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1901.6032.1 >prot_Ecto-sp13_S_contig1901.6032.1 ID=prot_Ecto-sp13_S_contig1901.6032.1|Name=mRNA_Ecto-sp13_S_contig1901.6032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp MSPPALRQIASWRGGAVEGSEGGPPLMNAQLGLVRVAGYGIIAGSLCLKTback to top mRNA from alignment at Ecto-sp13_S_contig1901:1084..3615- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1901.6032.1 ID=mRNA_Ecto-sp13_S_contig1901.6032.1|Name=mRNA_Ecto-sp13_S_contig1901.6032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2532bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1901:1084..3615- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1901:1084..3615- >mRNA_Ecto-sp13_S_contig1901.6032.1 ID=mRNA_Ecto-sp13_S_contig1901.6032.1|Name=mRNA_Ecto-sp13_S_contig1901.6032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1901:1084..3615- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |