mRNA_Ecto-sp13_S_contig18997.6022.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18997.6022.1
Unique NamemRNA_Ecto-sp13_S_contig18997.6022.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18997.6022.1 vs. uniprot
Match: D7FPE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE1_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 1.230e-93
Identity = 148/159 (93.08%), Postives = 148/159 (93.08%), Query Frame = 1 
Query:    1 AGSRWTVDTFRAFAPPGDIKVLETGCQGRCGLGPNILTRPSEEVYNGVAQPATVAAIIEASNEKWRHFGVPVADALVGAFGHVSKGDVLFKRGLFAEALVCYNQCIDTAGAFEGSTNALSVAKVKQSSAMRLLAKEGGRGSSRAAGTGSAAAAASVTLE 477
            AGSRWTVDTFRAFAPPGDIKVLETGCQGRCGLGPNILTRPSEEVYNGVAQPATVAAIIE        FGVPVAD LVGAFGHVSKGDVLFKRGLFAEAL CYNQCIDTAGAFEGSTNALSVAKVKQSSAMRLLAKEGGRGSSRAAGTGS AAAASVTLE
Sbjct:   56 AGSRWTVDTFRAFAPPGDIKVLETGCQGRCGLGPNILTRPSEEVYNGVAQPATVAAIIEID------FGVPVADTLVGAFGHVSKGDVLFKRGLFAEALACYNQCIDTAGAFEGSTNALSVAKVKQSSAMRLLAKEGGRGSSRAAGTGSTAAAASVTLE 208
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BLAST of mRNA_Ecto-sp13_S_contig18997.6022.1 vs. uniprot
Match: A0A7S2V0W4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0W4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.720e-14
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:    4 GSRWTVDTFRAFAPPGDIKVLETGCQGRCGLGPNILTRPSEEVYNGVAQPATVAAIIEASNEKWRHFGVPVADALVGAFGHVSKGDVLFKRGLFAEALVCYNQCIDTAGAFEGS 345
            G+  T + F A  PP ++++  TGCQG+CG GPN+   P  + Y GV QPATVAAI+E +       GV V D +V  +    K D L K+    +AL  Y+Q +  A A E +
Sbjct:   36 GASETYEVFEAMTPP-EMQISFTGCQGKCGSGPNVRVEPGAKDYAGVHQPATVAAILEIA------LGVVVDDVVVERYTDKMKADKLLKQRQPKKALEMYSQALAGAEAAEAT 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18997.6022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPE1_ECTSI1.230e-9393.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V0W4_9STRA3.720e-1439.47Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18997contigEcto-sp13_S_contig18997:860..3152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size477
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-14_004590.1
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462969.1404498-CDS-Ecto-sp13_S_contig18997:859..9451681462969.1404498-CDS-Ecto-sp13_S_contig18997:859..945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18997 860..945 +
1681462969.1570911-CDS-Ecto-sp13_S_contig18997:1867..19801681462969.1570911-CDS-Ecto-sp13_S_contig18997:1867..1980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18997 1868..1980 +
1681462969.1692662-CDS-Ecto-sp13_S_contig18997:2386..25271681462969.1692662-CDS-Ecto-sp13_S_contig18997:2386..2527Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18997 2387..2527 +
1681462969.1808558-CDS-Ecto-sp13_S_contig18997:3015..31521681462969.1808558-CDS-Ecto-sp13_S_contig18997:3015..3152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18997 3016..3152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18997.6022.1prot_Ecto-sp13_S_contig18997.6022.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18997 860..3152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18997.6022.1

>prot_Ecto-sp13_S_contig18997.6022.1 ID=prot_Ecto-sp13_S_contig18997.6022.1|Name=mRNA_Ecto-sp13_S_contig18997.6022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
AGSRWTVDTFRAFAPPGDIKVLETGCQGRCGLGPNILTRPSEEVYNGVAQ
PATVAAIIEASNEKWRHFGVPVADALVGAFGHVSKGDVLFKRGLFAEALV
CYNQCIDTAGAFEGSTNALSVAKVKQSSAMRLLAKEGGRGSSRAAGTGSA
AAAASVTLE
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mRNA from alignment at Ecto-sp13_S_contig18997:860..3152+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18997.6022.1 ID=mRNA_Ecto-sp13_S_contig18997.6022.1|Name=mRNA_Ecto-sp13_S_contig18997.6022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18997:860..3152+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGGTCTCGTTGGACAGTCGACACTTTCAGGGCGTTTGCCCCTCCGGG
AGACATCAAGGTTCTCGAGACCGGGTGTCAAGGCCGGTAAGACGAAGAAT
CAGAGTTTCGTCTACGTACTCTTTGGGTCTCCCTCTTGTACAGTGGGGAA
ATGTCGGCGTTGCCTCGTTGGAAATTCCCTTGAAGGTCTATGGGGCCACA
CATCCAGGTAGCAGGGTTAGACAAGCATCAACCAACTTATCCCCGAAGAC
CACGCTGGAGGAAAGCGGAGGATTGGTTCGGGGGGACGAAGCGCGCCTTG
TACTTGCTCGTATTTCTGTTTCTTGCACCCACCAACCGGCCGTTCGACGC
AGCCCCAGCGGTAGATTAGATGCGTTCGACGTACATGTGTCCCATGGTTC
CATGTCTCGATAGGGTCAATATATAGCAGTTTCCTTATGTAGCTTCAATG
ACGCCAAAACACGTGAGCATGGCGGTCAGGAGTTAGATTGTACATGACCT
GGTCGGTAGCAGTATCGAACTGTCGGTGACATACGACATCGCACCCCGTG
GACCGATTTTTATAGAGCTCGATTCCTCCACAGCAGAGGAAACTTGCGGT
GCCGAAAATGGCGGCGTTGGAACCATCTCGCCGAGAGCTTTCCGGAAACA
AGCGTAATACCGTTCATCCATGCGTCATCTTCGTCGTGGAACAATCGAGC
TGTGATATCATACGTCACCTAAGGTATATTTACTGGCCGTCTTCGTTGGG
CTCCTGCATGTACCCATGGTAGATGGTGAACCTTTTGCCCCCGATCCAGT
TGAAACTTATCCCGCCTCCCCGCCTACCGCTCGATGAGGACGCGGGCTCT
GTGGCCCTTGTTGGAGGCACTGACTGCTGCCCCCGCACAACGCTGCTGAA
ACGTTACGATCCAATCTACTCTTCGCAAAAAAGGTGTGCTACTGTACGTT
TCAGAAACCACATTCACGAGTCGCTCATACGAAATCGCGCTTTGTCTTTC
GAAGACAGGTGCGGCCTCGGTCCCAACATTTTGACGAGGCCTTCCGAAGA
GGTGTACAACGGGGTGGCCCAGCCAGCCACTGTGGCGGCAATAATCGAGG
CAAGCAACGAGAAATGGCGCCGTTGAAAACAATGCAAAACGACTTTGTTC
ATTGCTGGAACCACTAGATGCCGTGTGCCTTTTGTCTACCCCTGATGATG
GCGGGCACATGCCTATCCTGCTTGCTACGGCCACGCGATCGTCCGTCTGT
AAAAACTCGCGCCATCCCCATCCCAGACGAGCACCGGTGCGGAGTGTGAA
ACATTAAGCGCAAAGGTGTGATACATGCGGCTGCCGCTTGCAGTGTCTGC
TGTCGAAACTAGCTACTGTAGACGTCGCATTTCGGCCCGCTTCATCCCTT
CGCCGCCCATGTTTTTCCCATGTAGCACGGAAGCAACGCATGCAATGATG
ATCAAAAGACGCAACGCGGTCTTATCTGTACCCTATTTTGCCCCCTGCTC
GTGGTGTTGCGCGTTGCGATTAGATAGATTTTGGTGTCCCGGTTGCGGAC
GCCCTCGTGGGGGCGTTTGGCCATGTATCCAAGGGAGACGTCCTCTTCAA
GCGGGGCCTGTTCGCCGAGGCGTTGGTCTGCTACAATCAGTGCATCGACA
CTGCCGGAGCCTTCGAGGGTGAGCACGTGGTTCCTCGGAGAGTGCTCTCC
CCCTCCTAGCGACGATCGGATAGATAGGATACGGAAAACATTTTTGAGCC
ACCTTCGGCAAAGTACGATTTGGCCATCTGTGATCGGTCCTGTGGGAACA
ATGCTCCGTCCTTTCGAGGACGTGTGGTCAATGGTCCAACCGCTGAAGAA
TGGGAAACATGAGAGTAACCCCCCCCGCCCCACGGCTCCTGCTCGTCGTT
TTGTTCATCGAGCAGTCATCAAACTATGACCGCAAGGGATCCTCCCGAGA
AGGAAGCATGCTTTGGTGTTTCGGGAACACCACCTTCTTGGCTGGCTGGC
AGGCTTGTTTGTTTTTGTTGGACCCTCTCACTCCTGTCATCCCTTCCCTT
CCTCCGGCCTGTCCTGTCTTGCACATGCTGATCGACTTGCTCCCCTGCGC
TGCTGAATTTGCTTCTGCTGCTGCTGTGGCTGTCGCTGCTGTTGCTGGCT
CGACAGGGAGCACGAACGCGCTTAGCGTGGCCAAGGTGAAGCAGTCGAGC
GCGATGCGCTTGTTGGCGAAGGAGGGGGGTAGGGGCAGCAGCCGGGCTGC
GGGCACCGGGAGCGCTGCTGCTGCTGCGTCTGTTACGCTCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18997:860..3152+

>mRNA_Ecto-sp13_S_contig18997.6022.1 ID=mRNA_Ecto-sp13_S_contig18997.6022.1|Name=mRNA_Ecto-sp13_S_contig18997.6022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18997:860..3152+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGGTCTCGTTGGACAGTCGACACTTTCAGGGCGTTTGCCCCTCCGGG
AGACATCAAGGTTCTCGAGACCGGGTGTCAAGGCCGGTGCGGCCTCGGTC
CCAACATTTTGACGAGGCCTTCCGAAGAGGTGTACAACGGGGTGGCCCAG
CCAGCCACTGTGGCGGCAATAATCGAGGCAAGCAACGAGAAATGGCGCCA
TTTTGGTGTCCCGGTTGCGGACGCCCTCGTGGGGGCGTTTGGCCATGTAT
CCAAGGGAGACGTCCTCTTCAAGCGGGGCCTGTTCGCCGAGGCGTTGGTC
TGCTACAATCAGTGCATCGACACTGCCGGAGCCTTCGAGGGGAGCACGAA
CGCGCTTAGCGTGGCCAAGGTGAAGCAGTCGAGCGCGATGCGCTTGTTGG
CGAAGGAGGGGGGTAGGGGCAGCAGCCGGGCTGCGGGCACCGGGAGCGCT
GCTGCTGCTGCGTCTGTTACGCTCGAG
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