mRNA_Ecto-sp13_S_contig18995.6021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: D8LSC3_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC3_ECTSI) HSP 1 Score: 446 bits (1147), Expect = 5.050e-154 Identity = 230/244 (94.26%), Postives = 234/244 (95.90%), Query Frame = 1
Query: 271 NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSSVRPIEMQAHDPVRCVNEPQSASISVKKAPTAHFAA 1002
NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSSVRPIEMQAHDPVRCV++ +KAP AH+ A
Sbjct: 79 NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSSVRPIEMQAHDPVRCVDQR-------RKAPAAHYIA 315
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A6H5LBT5_9PHAE (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBT5_9PHAE) HSP 1 Score: 296 bits (759), Expect = 1.840e-96 Identity = 158/173 (91.33%), Postives = 159/173 (91.91%), Query Frame = 1
Query: 271 NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQ------VSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQ 771
NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQ VSLFLERFQLTP+EVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG KHQEAAYERLYRWVQDRCQTLEEETPAADVTLQ
Sbjct: 79 NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQARGEKEVSLFLERFQLTPNEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG--------KHQEAAYERLYRWVQDRCQTLEEETPAADVTLQ 243
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A836CBI3_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI3_9STRA) HSP 1 Score: 213 bits (543), Expect = 1.670e-59 Identity = 133/253 (52.57%), Postives = 156/253 (61.66%), Query Frame = 1
Query: 271 NYNLSACFQKSFERLRDRLEGLE---------------------GC--VAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDE---VEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDR---CQTL--EEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSSVRPIEMQAHDPVR 936
NYNLS CF KSFERL+ RLE LE G V GLEDGC S S RLS+A++SM+QFT RA+ LR +R++L + A QV FL FQLTP+E V A EP R FF+AL RL+ A C LVGS QSAGFELL+ LS+H E AYERLY WVQ R CQ +EETP AD TLQ AVR LR RP YY+HCQESIV+MRR+L+ QRFV L + + M+ D VR
Sbjct: 60 NYNLSLCFLKSFERLKGRLESLEQEVDQPQLKSNFKLSAMTLLRGARQVDGLEDGCRSASARLSSAESSMRQFTDRAQALRHRRAELSRRARQVERFLHTFQLTPEEAALVGAAGGLEEPAAARAFFAALARLRAAHARCTALVGS--QSAGFELLDALSRHLEGAYERLYHWVQARRVKCQEQLSDEETPQADGTLQVAVRALRARPAYYSHCQESIVSMRRRLVAQRFVAELAQARGAADGRAMEGIDCVR 310
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A7S2S2C7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2C7_9STRA) HSP 1 Score: 176 bits (446), Expect = 1.740e-45 Identity = 104/243 (42.80%), Postives = 146/243 (60.08%), Query Frame = 1
Query: 271 NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEAL-----SAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEET----------PAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQ--SSVRPIEMQAHDPVRCVNE 948
N L+ F +F L +RLE + G V LE C +++ R+S A+ +MQ+FT RA L ++R ++ +HA++VS FL ++ ++ +EVEAL QG RFF AL RL+ VR C RLVGS QSA FELLE LS+ QE AY+R+Y WVQ R ++ + +A + A+ LR RP ++ HCQE + + RR LVQRF+ ALT G + RPIE+QAHDPVR + +
Sbjct: 52 NVALARQFISAFAPLEERLEKVGGVVDALEASCGTMATRVSQAEQAMQEFTKRANELTEKRKEVQQHAEEVSAFLSQYSMSDEEVEALLTLPIETPSADGQGIRFFHALGRLREVRDECCRLVGSKHQSAAFELLEVLSQQQEKAYDRVYEWVQQRANAMDGSSGDPFGIMDIDDSAHRVFREALTALRARPGFFRHCQECVASARRTGLVQRFIAALTIGGPGGTPRPIELQAHDPVRYLGD 294
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: W7T6J5_9STRA (Conserved oligomeric Golgi complex subunit 6 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6J5_9STRA) HSP 1 Score: 155 bits (393), Expect = 2.970e-38 Identity = 94/254 (37.01%), Postives = 141/254 (55.51%), Query Frame = 1
Query: 277 NLSAC--FQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQ----LEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAA-----DVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTS--------------GQSSV-----RPIEMQAHDPVRCVNE 948
N+ C F + FE L++RL L+ A LED C I R+ A+ SM F + L+ Q+ + A Q+ FL+ F L+ E+ AL + + PD R FF+AL R + +R CG LVGSS Q+ GFE+LE+LS+HQE A+ RL+ ++ RC LE + P DV L +R +RDRP + HCQE ++ R+ ++ +RF+ AL+ G+ S+ RPI+M +HDPVR +++
Sbjct: 72 NMVLCDDFLRLFEVLKERLAALDAHTARLEDHCHGIHARIETAEESMSAFLAKTRVLQKQQVECESKAVQLQDFLDNFTLSDAEIAALRYEAVEKVLPDGHRPFFAALARAQEIRGECGALVGSSRQNLGFEMLEELSEHQETAFRRLHSYILQRCAGLERDDPQEEVEENDVALGLGLRTIRDRPALFVHCQECVLQRRKDVVRRRFLQALSGRDEGAEDGDVREEKGKRSMSGSGQRPIDMHSHDPVRYLSD 325
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: UPI000719C38B (conserved oligomeric Golgi complex subunit 6-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C38B) HSP 1 Score: 150 bits (380), Expect = 1.050e-36 Identity = 81/221 (36.65%), Postives = 123/221 (55.66%), Query Frame = 1
Query: 292 FQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSS--VRPIEMQAHDPVRCVNE 948
F ++F R+++ L+ + V + D C ++ RL A + + L+ + +L A V FLERFQL P+EV+AL + FF AL R+K + C L+ + Q+AG E++E ++ HQEAAYERLYRW Q C+ L + P + TL A+R L+DRP+ + + E RR +V+ F+ ALT G RPIE+ +HDP+R V +
Sbjct: 75 FAEAFGRVKEELDDVHADVQAMADCCRDMTSRLRATRTQTHELIAKTTKLQTETQRLEMRASVVDAFLERFQLKPEEVKALRGTRDGSLHDNFFDALRRVKQIHDDCKVLLRTKQQTAGLEIMEAMALHQEAAYERLYRWTQSECRVLNSDLPDINATLCQAMRALQDRPVLFTYSVEEFSTARRNAVVRGFIDALTRGGPGGVPRPIELHSHDPLRYVGD 295
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A383VX96_TETOB (Conserved oligomeric Golgi complex subunit 6 n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VX96_TETOB) HSP 1 Score: 149 bits (375), Expect = 8.180e-36 Identity = 88/225 (39.11%), Postives = 126/225 (56.00%), Query Frame = 1
Query: 277 NLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTL-EEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSS--VRPIEMQAHDPVRCV 942
+++ F ++ E + L+ ++G + GL C +IS LS A + A+ + L V FL+++QLTP+EV L A G FF+AL R++++ C L+ S+ Q AG EL++ ++ HQEAAYE L RWVQ C++L E + P D TL AAV LRDRP+ + +C E + R L QRF++ALT G RPIEM AHDP R V
Sbjct: 59 DINGQFLQAAEAVMQALDDVQGQLDGLSSSCGAISSALSTARGTASGLLADADKAGRELGALEAKRQMVEQFLDKYQLTPEEVAVLQAGRV---GPEFFAALSRVRSIHEHCRGLLRSAHQRAGLELMDAMAAHQEAAYEHLCRWVQAECRSLGENDAPEVDPTLTAAVAALRDRPVLFKYCAEEVAGARHGALFQRFIVALTRGGPGGLPRPIEMHAHDPRRYV 280
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A2K1L2Q0_PHYPA (Conserved oligomeric Golgi complex subunit 6 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L2Q0_PHYPA) HSP 1 Score: 145 bits (365), Expect = 1.790e-34 Identity = 81/222 (36.49%), Postives = 128/222 (57.66%), Query Frame = 1
Query: 292 FQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTL-EEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSS--VRPIEMQAHDPVRCVNE 948
F ++ E + L+ +E VAGL + C I+ LS+ ++ + E L+ + + + ++ FL +QL P+EV AL E D FF AL+R++ + +C L+ + Q AG EL++ ++ +QEAAYERL RWVQ C++L + +TP L+AA + L+DRP+ + +C E + N R L +RF+ ALT G RPIE+ AHDP+R V +
Sbjct: 64 FLRASESAQKALDAVELEVAGLAECCERIAKSLSSCSSTTSEIVSATERLKQELEHTTQRQELITAFLNNYQLRPEEVTALR---EEDISENFFKALMRVQEIHTNCKILLRTHHQRAGLELMDMMAVYQEAAYERLCRWVQAECRSLGDNDTPEVSDLLKAAAQSLKDRPVLFKYCAEEVANTRHNALFRRFITALTRGGPGGMPRPIEVHAHDPLRYVGD 282
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A7J7PFE3_9CHLO (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PFE3_9CHLO) HSP 1 Score: 144 bits (364), Expect = 2.270e-34 Identity = 88/225 (39.11%), Postives = 125/225 (55.56%), Query Frame = 1
Query: 277 NLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTL-EEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSS--VRPIEMQAHDPVRCV 942
+++ F ++ E + L+ ++G + GL C +ISG LS A + A+ + + L V FL+++QLT +EV L A G FF+AL R++ + C L+ S Q AG EL++Q++ HQEAAYE L RWVQ C+ L E + P D TL AAV LRDRP+ + +C E + R L QRF++ALT G RPIE+ AHDP R V
Sbjct: 59 HINGRFLQAAEAVMQALDDVQGQLDGLTASCGAISGALSCARTAASGLLADADKAGRELAALEAKRQLVEQFLDKYQLTSEEVAVLQAGRV---GAEFFAALSRVRGIHEHCRGLLRSHHQRAGLELMDQMAAHQEAAYEHLCRWVQAECRGLGEHDAPEVDPTLTAAVAALRDRPVLFKYCAEEVAGARHGALFQRFIVALTRGGPGGLPRPIEVHAHDPRRYV 280
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A6J1C0T5_MOMCH (Conserved oligomeric Golgi complex subunit 6 n=8 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1C0T5_MOMCH) HSP 1 Score: 140 bits (354), Expect = 4.780e-33 Identity = 80/222 (36.04%), Postives = 128/222 (57.66%), Query Frame = 1
Query: 292 FQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTL-EEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSS--VRPIEMQAHDPVRCVNE 948
F ++ + + L+ +E V L D C I+ L+++ AS+ E L+ + + + VS F+ +Q++ +E+ AL + D +FF AL ++ + A+C L+ + Q AG EL++ ++ +QEAAYERL RWVQ C++L E + P L+ AVRCLR+RP+ + +C E + NMR L +RF+ ALT G RPIE+ AHDP+R V +
Sbjct: 66 FLRASDTAQQALDRVEEEVNVLADCCDRIAKALNSSSASIGDIISTTERLKQELEITTQRQEIVSCFVRDYQISNEEINALRHE---DLNEKFFKALSHVQEIHANCKTLLRTHHQRAGLELMDMMAVYQEAAYERLCRWVQTECRSLGESDNPEVSELLKTAVRCLRERPVLFKYCAEEVANMRHNALFRRFISALTRGGPGGLPRPIEVHAHDPLRYVGD 284 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18995.6021.1 >prot_Ecto-sp13_S_contig18995.6021.1 ID=prot_Ecto-sp13_S_contig18995.6021.1|Name=mRNA_Ecto-sp13_S_contig18995.6021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp MQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQback to top mRNA from alignment at Ecto-sp13_S_contig18995:170..3151+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18995.6021.1 ID=mRNA_Ecto-sp13_S_contig18995.6021.1|Name=mRNA_Ecto-sp13_S_contig18995.6021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2982bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18995:170..3151+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18995:170..3151+ >mRNA_Ecto-sp13_S_contig18995.6021.1 ID=mRNA_Ecto-sp13_S_contig18995.6021.1|Name=mRNA_Ecto-sp13_S_contig18995.6021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18995:170..3151+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |