mRNA_Ecto-sp13_S_contig18995.6021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18995.6021.1
Unique NamemRNA_Ecto-sp13_S_contig18995.6021.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: D8LSC3_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC3_ECTSI)

HSP 1 Score: 446 bits (1147), Expect = 5.050e-154
Identity = 230/244 (94.26%), Postives = 234/244 (95.90%), Query Frame = 1
Query:  271 NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSSVRPIEMQAHDPVRCVNEPQSASISVKKAPTAHFAA 1002
            NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSSVRPIEMQAHDPVRCV++        +KAP AH+ A
Sbjct:   79 NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSSVRPIEMQAHDPVRCVDQR-------RKAPAAHYIA 315          
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A6H5LBT5_9PHAE (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBT5_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 1.840e-96
Identity = 158/173 (91.33%), Postives = 159/173 (91.91%), Query Frame = 1
Query:  271 NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQ------VSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQ 771
            NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQ      VSLFLERFQLTP+EVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG        KHQEAAYERLYRWVQDRCQTLEEETPAADVTLQ
Sbjct:   79 NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQARGEKEVSLFLERFQLTPNEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAG--------KHQEAAYERLYRWVQDRCQTLEEETPAADVTLQ 243          
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A836CBI3_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI3_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.670e-59
Identity = 133/253 (52.57%), Postives = 156/253 (61.66%), Query Frame = 1
Query:  271 NYNLSACFQKSFERLRDRLEGLE---------------------GC--VAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDE---VEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDR---CQTL--EEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSSVRPIEMQAHDPVR 936
            NYNLS CF KSFERL+ RLE LE                     G   V GLEDGC S S RLS+A++SM+QFT RA+ LR +R++L + A QV  FL  FQLTP+E   V A     EP   R FF+AL RL+   A C  LVGS  QSAGFELL+ LS+H E AYERLY WVQ R   CQ    +EETP AD TLQ AVR LR RP YY+HCQESIV+MRR+L+ QRFV  L   + +     M+  D VR
Sbjct:   60 NYNLSLCFLKSFERLKGRLESLEQEVDQPQLKSNFKLSAMTLLRGARQVDGLEDGCRSASARLSSAESSMRQFTDRAQALRHRRAELSRRARQVERFLHTFQLTPEEAALVGAAGGLEEPAAARAFFAALARLRAAHARCTALVGS--QSAGFELLDALSRHLEGAYERLYHWVQARRVKCQEQLSDEETPQADGTLQVAVRALRARPAYYSHCQESIVSMRRRLVAQRFVAELAQARGAADGRAMEGIDCVR 310          
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A7S2S2C7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2C7_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.740e-45
Identity = 104/243 (42.80%), Postives = 146/243 (60.08%), Query Frame = 1
Query:  271 NYNLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEAL-----SAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEET----------PAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQ--SSVRPIEMQAHDPVRCVNE 948
            N  L+  F  +F  L +RLE + G V  LE  C +++ R+S A+ +MQ+FT RA  L ++R ++ +HA++VS FL ++ ++ +EVEAL            QG RFF AL RL+ VR  C RLVGS  QSA FELLE LS+ QE AY+R+Y WVQ R   ++  +           +A    + A+  LR RP ++ HCQE + + RR  LVQRF+ ALT G    + RPIE+QAHDPVR + +
Sbjct:   52 NVALARQFISAFAPLEERLEKVGGVVDALEASCGTMATRVSQAEQAMQEFTKRANELTEKRKEVQQHAEEVSAFLSQYSMSDEEVEALLTLPIETPSADGQGIRFFHALGRLREVRDECCRLVGSKHQSAAFELLEVLSQQQEKAYDRVYEWVQQRANAMDGSSGDPFGIMDIDDSAHRVFREALTALRARPGFFRHCQECVASARRTGLVQRFIAALTIGGPGGTPRPIELQAHDPVRYLGD 294          
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: W7T6J5_9STRA (Conserved oligomeric Golgi complex subunit 6 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6J5_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.970e-38
Identity = 94/254 (37.01%), Postives = 141/254 (55.51%), Query Frame = 1
Query:  277 NLSAC--FQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQ----LEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAA-----DVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTS--------------GQSSV-----RPIEMQAHDPVRCVNE 948
            N+  C  F + FE L++RL  L+   A LED C  I  R+  A+ SM  F  +   L+ Q+ +    A Q+  FL+ F L+  E+ AL  +    + PD  R FF+AL R + +R  CG LVGSS Q+ GFE+LE+LS+HQE A+ RL+ ++  RC  LE + P       DV L   +R +RDRP  + HCQE ++  R+ ++ +RF+ AL+               G+ S+     RPI+M +HDPVR +++
Sbjct:   72 NMVLCDDFLRLFEVLKERLAALDAHTARLEDHCHGIHARIETAEESMSAFLAKTRVLQKQQVECESKAVQLQDFLDNFTLSDAEIAALRYEAVEKVLPDGHRPFFAALARAQEIRGECGALVGSSRQNLGFEMLEELSEHQETAFRRLHSYILQRCAGLERDDPQEEVEENDVALGLGLRTIRDRPALFVHCQECVLQRRKDVVRRRFLQALSGRDEGAEDGDVREEKGKRSMSGSGQRPIDMHSHDPVRYLSD 325          
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: UPI000719C38B (conserved oligomeric Golgi complex subunit 6-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C38B)

HSP 1 Score: 150 bits (380), Expect = 1.050e-36
Identity = 81/221 (36.65%), Postives = 123/221 (55.66%), Query Frame = 1
Query:  292 FQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSS--VRPIEMQAHDPVRCVNE 948
            F ++F R+++ L+ +   V  + D C  ++ RL A      +   +   L+ +  +L   A  V  FLERFQL P+EV+AL    +      FF AL R+K +   C  L+ +  Q+AG E++E ++ HQEAAYERLYRW Q  C+ L  + P  + TL  A+R L+DRP+ + +  E     RR  +V+ F+ ALT G      RPIE+ +HDP+R V +
Sbjct:   75 FAEAFGRVKEELDDVHADVQAMADCCRDMTSRLRATRTQTHELIAKTTKLQTETQRLEMRASVVDAFLERFQLKPEEVKALRGTRDGSLHDNFFDALRRVKQIHDDCKVLLRTKQQTAGLEIMEAMALHQEAAYERLYRWTQSECRVLNSDLPDINATLCQAMRALQDRPVLFTYSVEEFSTARRNAVVRGFIDALTRGGPGGVPRPIELHSHDPLRYVGD 295          
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A383VX96_TETOB (Conserved oligomeric Golgi complex subunit 6 n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VX96_TETOB)

HSP 1 Score: 149 bits (375), Expect = 8.180e-36
Identity = 88/225 (39.11%), Postives = 126/225 (56.00%), Query Frame = 1
Query:  277 NLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTL-EEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSS--VRPIEMQAHDPVRCV 942
            +++  F ++ E +   L+ ++G + GL   C +IS  LS A  +       A+    +   L      V  FL+++QLTP+EV  L A      G  FF+AL R++++   C  L+ S+ Q AG EL++ ++ HQEAAYE L RWVQ  C++L E + P  D TL AAV  LRDRP+ + +C E +   R   L QRF++ALT G      RPIEM AHDP R V
Sbjct:   59 DINGQFLQAAEAVMQALDDVQGQLDGLSSSCGAISSALSTARGTASGLLADADKAGRELGALEAKRQMVEQFLDKYQLTPEEVAVLQAGRV---GPEFFAALSRVRSIHEHCRGLLRSAHQRAGLELMDAMAAHQEAAYEHLCRWVQAECRSLGENDAPEVDPTLTAAVAALRDRPVLFKYCAEEVAGARHGALFQRFIVALTRGGPGGLPRPIEMHAHDPRRYV 280          
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A2K1L2Q0_PHYPA (Conserved oligomeric Golgi complex subunit 6 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L2Q0_PHYPA)

HSP 1 Score: 145 bits (365), Expect = 1.790e-34
Identity = 81/222 (36.49%), Postives = 128/222 (57.66%), Query Frame = 1
Query:  292 FQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTL-EEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSS--VRPIEMQAHDPVRCVNE 948
            F ++ E  +  L+ +E  VAGL + C  I+  LS+  ++  +     E L+ +     +  + ++ FL  +QL P+EV AL    E D    FF AL+R++ +  +C  L+ +  Q AG EL++ ++ +QEAAYERL RWVQ  C++L + +TP     L+AA + L+DRP+ + +C E + N R   L +RF+ ALT G      RPIE+ AHDP+R V +
Sbjct:   64 FLRASESAQKALDAVELEVAGLAECCERIAKSLSSCSSTTSEIVSATERLKQELEHTTQRQELITAFLNNYQLRPEEVTALR---EEDISENFFKALMRVQEIHTNCKILLRTHHQRAGLELMDMMAVYQEAAYERLCRWVQAECRSLGDNDTPEVSDLLKAAAQSLKDRPVLFKYCAEEVANTRHNALFRRFITALTRGGPGGMPRPIEVHAHDPLRYVGD 282          
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A7J7PFE3_9CHLO (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PFE3_9CHLO)

HSP 1 Score: 144 bits (364), Expect = 2.270e-34
Identity = 88/225 (39.11%), Postives = 125/225 (55.56%), Query Frame = 1
Query:  277 NLSACFQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTL-EEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSS--VRPIEMQAHDPVRCV 942
            +++  F ++ E +   L+ ++G + GL   C +ISG LS A  +       A+    + + L      V  FL+++QLT +EV  L A      G  FF+AL R++ +   C  L+ S  Q AG EL++Q++ HQEAAYE L RWVQ  C+ L E + P  D TL AAV  LRDRP+ + +C E +   R   L QRF++ALT G      RPIE+ AHDP R V
Sbjct:   59 HINGRFLQAAEAVMQALDDVQGQLDGLTASCGAISGALSCARTAASGLLADADKAGRELAALEAKRQLVEQFLDKYQLTSEEVAVLQAGRV---GAEFFAALSRVRGIHEHCRGLLRSHHQRAGLELMDQMAAHQEAAYEHLCRWVQAECRGLGEHDAPEVDPTLTAAVAALRDRPVLFKYCAEEVAGARHGALFQRFIVALTRGGPGGLPRPIEVHAHDPRRYV 280          
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Match: A0A6J1C0T5_MOMCH (Conserved oligomeric Golgi complex subunit 6 n=8 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1C0T5_MOMCH)

HSP 1 Score: 140 bits (354), Expect = 4.780e-33
Identity = 80/222 (36.04%), Postives = 128/222 (57.66%), Query Frame = 1
Query:  292 FQKSFERLRDRLEGLEGCVAGLEDGCSSISGRLSAADASMQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQGRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYRWVQDRCQTL-EEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLVQRFVMALTSGQSS--VRPIEMQAHDPVRCVNE 948
            F ++ +  +  L+ +E  V  L D C  I+  L+++ AS+       E L+ +     +  + VS F+  +Q++ +E+ AL  +   D   +FF AL  ++ + A+C  L+ +  Q AG EL++ ++ +QEAAYERL RWVQ  C++L E + P     L+ AVRCLR+RP+ + +C E + NMR   L +RF+ ALT G      RPIE+ AHDP+R V +
Sbjct:   66 FLRASDTAQQALDRVEEEVNVLADCCDRIAKALNSSSASIGDIISTTERLKQELEITTQRQEIVSCFVRDYQISNEEINALRHE---DLNEKFFKALSHVQEIHANCKTLLRTHHQRAGLELMDMMAVYQEAAYERLCRWVQTECRSLGESDNPEVSELLKTAVRCLRERPVLFKYCAEEVANMRHNALFRRFISALTRGGPGGLPRPIEVHAHDPLRYVGD 284          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18995.6021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSC3_ECTSI5.050e-15494.26Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A6H5LBT5_9PHAE1.840e-9691.33Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A836CBI3_9STRA1.670e-5952.57Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S2S2C7_9STRA1.740e-4542.80Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
W7T6J5_9STRA2.970e-3837.01Conserved oligomeric Golgi complex subunit 6 n=5 T... [more]
UPI000719C38B1.050e-3636.65conserved oligomeric Golgi complex subunit 6-like ... [more]
A0A383VX96_TETOB8.180e-3639.11Conserved oligomeric Golgi complex subunit 6 n=2 T... [more]
A0A2K1L2Q0_PHYPA1.790e-3436.49Conserved oligomeric Golgi complex subunit 6 n=2 T... [more]
A0A7J7PFE3_9CHLO2.270e-3439.11Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A6J1C0T5_MOMCH4.780e-3336.04Conserved oligomeric Golgi complex subunit 6 n=8 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18995contigEcto-sp13_S_contig18995:170..3151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score356.3
Seed ortholog evalue1.2e-95
Seed eggNOG ortholog2880.D8LSC3
Preferred nameCOG6
Model size1154
KEGG koko:K20293
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0031090,GO:0031984,GO:0032258,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023
Exons5
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG3758@1,KOG3758@2759
Cds size744
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18995.6021.1prot_Ecto-sp13_S_contig18995.6021.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18995 578..3151 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462969.053788-UTR-Ecto-sp13_S_contig18995:169..5771681462969.053788-UTR-Ecto-sp13_S_contig18995:169..577Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18995 170..577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462969.066606-CDS-Ecto-sp13_S_contig18995:577..6491681462969.066606-CDS-Ecto-sp13_S_contig18995:577..649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18995 578..649 +
1681462969.0766308-CDS-Ecto-sp13_S_contig18995:1271..14381681462969.0766308-CDS-Ecto-sp13_S_contig18995:1271..1438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18995 1272..1438 +
1681462969.0860045-CDS-Ecto-sp13_S_contig18995:1702..18261681462969.0860045-CDS-Ecto-sp13_S_contig18995:1702..1826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18995 1703..1826 +
1681462969.097036-CDS-Ecto-sp13_S_contig18995:2018..20691681462969.097036-CDS-Ecto-sp13_S_contig18995:2018..2069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18995 2019..2069 +
1681462969.1080656-CDS-Ecto-sp13_S_contig18995:2821..31511681462969.1080656-CDS-Ecto-sp13_S_contig18995:2821..3151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18995 2822..3151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18995.6021.1

>prot_Ecto-sp13_S_contig18995.6021.1 ID=prot_Ecto-sp13_S_contig18995.6021.1|Name=mRNA_Ecto-sp13_S_contig18995.6021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp
MQQFTLRAETLRDQRSQLGKHADQVSLFLERFQLTPDEVEALSAQLEPDQ
GRRFFSALLRLKTVRASCGRLVGSSPQSAGFELLEQLSKHQEAAYERLYR
WVQDRCQTLEEETPAADVTLQAAVRCLRDRPLYYAHCQESIVNMRRKLLV
QRFVMALTSGQSSVRPIEMQAHDPVRCVNEPQSASISVKKAPTAHFAAYL
GVTRVVLEAHRAGEGKRLENIAPPHTRKNILRRSWVTRDPKISSCLRT
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mRNA from alignment at Ecto-sp13_S_contig18995:170..3151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18995.6021.1 ID=mRNA_Ecto-sp13_S_contig18995.6021.1|Name=mRNA_Ecto-sp13_S_contig18995.6021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2982bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18995:170..3151+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCATTTGTGATGTAGGCGCACGGGGGAGATTGCTCTGCATCACTTCCAT TCCTGTGCTAGTTACCCCTTCTCCACAGGCGCATACATGCACGACAGGCC TCGGTTGTGAGGAGGCGTAGAGATGCGGTCTAATCCCGCACAACGGCAGC TAGGTACCTTAGTCTAGCTTCGCAGAGAGCACAACATGATTTCGTGTATG TATAACCGCGTTTGAAGATTCCTACTGCTGTACACCAACACCAACCACCC TCTCCGTGCTCCTCGACTAGAACTACAACTTGAGCGCCTGCTTCCAGAAG AGCTTCGAGCGCCTTAGGGACCGCCTCGAAGGGCTGGAGGGGTGCGTCGC CGGGCTCGAGGACGGCTGCTCATCCATCTCCGGGCGTCTCTCCGCCGCGG ACGCCAGCATGCAGCAGTTCACCCTGAGGGCGGAGACACTACGGGACCAG AGGAGTCAGCTCGGGAAGCACGCTGATCAGGCAAAAGGATGCTTTTGCTC TTCTTATTCCGTCGCTGGCGCCACGATACACCAATCATTTCCCTGCTGCT CTGCGGCTGTTGGCGTGTCTTCTATTCTAAAAGCGGAGATCACTTGTCGT TCTGGCGCCTTGTATCAAGGGTTTCCTTCCGTTGCTGCTGCTGCGGTGTT TTTATTCAGGCGATGAGGACGCGTACCTTGTTAAGGCCTCGCCGCCACAC GGGAATCTTGGGAATGGTCGCGCGCAGTTTTCAACCTTTCGCTGTTGGAC GATGCTTCACAGCGCCCCCCACGCAGTCACACGGGCCTACAGCTCGAAAG GGGTTATGGCTTCACAAAAATTGCCCTGCTACACCGTAGTGTTGGGGGGG GTATAGACAACGCGTGTGTGCGTGCATGGCCGAGAATGGAAGATGCAGAT GCCGTTCCAAGCTCGTAGGGAGAAAGAGGAAACAGACGAATCTGTTGCGC AAGGCTGCCAGTCTCTCTCATCACGTCACTCGAATACTCCATACAGATCT CCGTCTAACATTCTACACCTTTGCGTTCGCAACCACGCATGCATGGCCAT GATTGGGCGTGTGTGCATCCGTTGTCGTGTCCCACACAACAAATCGTCGC AGGTGTCCCTGTTTCTGGAGAGATTTCAGCTCACGCCCGACGAAGTCGAG GCTCTCTCGGCGCAGCTCGAGCCCGACCAAGGCAGGCGCTTCTTCTCCGC CCTGCTCAGGCTCAAGACCGTTCGGGCCTCTTGCGGTCGGCTGGTGGGGT CCAGCCCGCAGAGCGCCGGGTAAGCTTCGGTGTTCGTGGTCTTCTGGCTT GTTTTTTTGTTTCGTCATTTGAGCTTGGCTGCATGGAAACGTAAAACGAG ACCGTGGCTGGATGTGCCATTGAGCTTTTTTTTTTTTTGTGGGTGTACGT ATTCAATCAATCTTCCAAGCTTCTCTTGATATTCTGTTTCCGCCTCTGCC CTTCCCGCTCTCGCCCGCCCGCCCGCCCGCCCGCCCGCCCTTCGAACTAC CTTCTGTGCCGTGTGCGTGCGCTTTCCCTCAAGGTTCGAGCTGTTGGAGC AGCTCAGCAAGCACCAGGAAGCGGCGTACGAGCGGCTGTATCGATGGGTG CAGGACCGCTGCCAGACGTTGGAGGAGGAGACGCCCGCGGCTGACGTGAC CCTGCAGGTTCGTTCGATCGAGTCGCGCCGGATTGGTTGTCGTTGTTTTT ATTGTCGTTGTTGTGGTCGTTTCCTCTTTCGGTGTCATTATCTTTTGTGA ATGGTACCATGTGTGTGCATCAGTCATAGCCTTGTTTCTGCGTCGCTCTC CCTCCCACCCACCCTCCCACCCATTCACAATCCCACGGTACCCCCGCAGG CTGCGGTACGATGTCTTCGAGATAGGCCGCTCTACTACGCACATTGTCAG GTACGCCGCGCACAGTGGTTCATTTCTCGATCGAGAGTTACCACCTGTTC GAGTGTGTTCCGTGCTGTTCTCGGACTAGGACTACCGATGACAGCAGTGT GTTCGTAGGGCTACCCCTTATTGCCAAGTGTGAAGCGTTTCCCTGGTCCC TCCGAAGGCAACATGGGCTGCGTGTTCGGGCCGAAACATATTCTCCATGG TGCAATAGTCGGAGGGTTTCTTACTCGCCTGGTGCAGATTGTCTCGACGT GTCTTGGATGCACAGCGTCCGGGGCAAATGGGGGGACGACAGACTGCAAT GCTACCCTATGCTGGATGTGTTTTCCCCTTTTTTGTCGCATGTACATGTC CTGTAGTGGCGTTAACAAGTTTTGTGCAATCAGTGCAACCTGTGGTTCAT GTCGTTGAACTTCGCGCTCTGTTTTCGATTTTTTGTTTTGCGTTGACTTC CATCGTATCGTGTTTTCAGCCTGAATCAAGACATAAAGGAGACTTGTGTT CTATTCTTCCATCCCATGGGTGGCTTCAACATTGCGTATCTTTTATCCCG CGGCGTGAGCTGGGTTTCCGAAAACGCGTCAAATATGTGTGTCCTCCACA TGACCCGCCCCTCCCCTGGTGTATACGAGCGTAATTATTACAGGATGGCG ACGCCCCCCCCCCCCCCCTCCCCTTATCCCCGCTCCCTCGCTCCTTGGGT GCGCGCTTGTGTGCATTTTTTTCATTGCTGGCCTACTGCCCCTCGTCTCC AGGAGAGTATAGTAAACATGCGGCGCAAGCTGCTTGTGCAGAGGTTCGTG ATGGCCCTGACGTCCGGGCAGTCGTCGGTTCGACCGATCGAAATGCAGGC CCACGACCCGGTCAGGTGCGTCAATGAGCCTCAATCGGCGTCAATCAGCG TCAAGAAAGCGCCCACCGCCCACTTTGCTGCATATCTGGGGGTCACACGC GTGGTCCTCGAGGCTCATCGTGCTGGAGAAGGAAAACGGCTTGAAAACAT AGCGCCCCCCCACACACGCAAAAACATTTTGCGACGATCGTGGGTCACAC GTGATCCGAAAATCTCGTCGTGCTTGAGAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18995:170..3151+

>mRNA_Ecto-sp13_S_contig18995.6021.1 ID=mRNA_Ecto-sp13_S_contig18995.6021.1|Name=mRNA_Ecto-sp13_S_contig18995.6021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18995:170..3151+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCAGTTCACCCTGAGGGCGGAGACACTACGGGACCAGAGGAGTCA
GCTCGGGAAGCACGCTGATCAGGTGTCCCTGTTTCTGGAGAGATTTCAGC
TCACGCCCGACGAAGTCGAGGCTCTCTCGGCGCAGCTCGAGCCCGACCAA
GGCAGGCGCTTCTTCTCCGCCCTGCTCAGGCTCAAGACCGTTCGGGCCTC
TTGCGGTCGGCTGGTGGGGTCCAGCCCGCAGAGCGCCGGGTTCGAGCTGT
TGGAGCAGCTCAGCAAGCACCAGGAAGCGGCGTACGAGCGGCTGTATCGA
TGGGTGCAGGACCGCTGCCAGACGTTGGAGGAGGAGACGCCCGCGGCTGA
CGTGACCCTGCAGGCTGCGGTACGATGTCTTCGAGATAGGCCGCTCTACT
ACGCACATTGTCAGGAGAGTATAGTAAACATGCGGCGCAAGCTGCTTGTG
CAGAGGTTCGTGATGGCCCTGACGTCCGGGCAGTCGTCGGTTCGACCGAT
CGAAATGCAGGCCCACGACCCGGTCAGGTGCGTCAATGAGCCTCAATCGG
CGTCAATCAGCGTCAAGAAAGCGCCCACCGCCCACTTTGCTGCATATCTG
GGGGTCACACGCGTGGTCCTCGAGGCTCATCGTGCTGGAGAAGGAAAACG
GCTTGAAAACATAGCGCCCCCCCACACACGCAAAAACATTTTGCGACGAT
CGTGGGTCACACGTGATCCGAAAATCTCGTCGTGCTTGAGAACG
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