mRNA_Ecto-sp13_S_contig18993.6020.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18993.6020.1
Unique NamemRNA_Ecto-sp13_S_contig18993.6020.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18993.6020.1 vs. uniprot
Match: D7G4L5_ECTSI (NDK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L5_ECTSI)

HSP 1 Score: 560 bits (1443), Expect = 3.680e-199
Identity = 285/301 (94.68%), Postives = 289/301 (96.01%), Query Frame = 1
Query:    1 MERNEVVFVLGGPGSGKGTHCARIAADFGYTHLSTGDLLREEQKKESELAIKIAECIRDGQLVPSSTMVALLKEAILKGDSRRFLLDGFPRSKDNLEAWFGAFSDEEIQQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELERLGMVRKVSTVPARELVAHRVSRYFKGCRLVDPVERTLALIKPDATRNAGDILNRVEQEGFVVVGKIEGRSWSQQDAATFYSEHRGKAFFDTLVDFMSSGPIVQLCLEKVGAIKAWRELAGPTNSTDAKTSEPTSIR 903
            MERNEVVFVLGGPGSGKGTHCARIAA+FGYTHLSTGDLLREEQKKESELA KIAECIRDGQLVPSSTMVALLKEAIL GDS+RFLLDGFPRSKDNLEAWF AFSDEEIQ VSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEEL RLGMVRKVSTVPARELVAHRV RYFKGCRLVDPVERTLALIKPDAT N  +ILNRVEQEGFVVVGKIEGR WSQQDAATFYSEH GKAFFDTLVDFMSSGPIVQLCLEKVGAIKAWRELAGPTNSTDAKT EP+SIR
Sbjct:    1 MERNEVVFVLGGPGSGKGTHCARIAAEFGYTHLSTGDLLREEQKKESELATKIAECIRDGQLVPSSTMVALLKEAILNGDSKRFLLDGFPRSKDNLEAWFDAFSDEEIQ-VSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELRRLGMVRKVSTVPARELVAHRVRRYFKGCRLVDPVERTLALIKPDATGNTNEILNRVEQEGFVVVGKIEGRVWSQQDAATFYSEHSGKAFFDTLVDFMSSGPIVQLCLEKVGAIKAWRELAGPTNSTDAKTLEPSSIR 300          
BLAST of mRNA_Ecto-sp13_S_contig18993.6020.1 vs. uniprot
Match: A0A6H5KI40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI40_9PHAE)

HSP 1 Score: 437 bits (1125), Expect = 1.200e-149
Identity = 222/234 (94.87%), Postives = 227/234 (97.01%), Query Frame = 1
Query:  202 MVALLKEAILKGDSRRFLLDGFPRSKDNLEAWFGAFSDEEIQQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELERLGMVRKVSTVPARELVAHRVSRYFKGCRLVDPVERTLALIKPDATRNAGDILNRVEQEGFVVVGKIEGRSWSQQDAATFYSEHRGKAFFDTLVDFMSSGPIVQLCLEKVGAIKAWRELAGPTNSTDAKTSEPTSIR 903
            MVALLKEAILKGDS+RFLLDGFPRSKDNLEAWF AFSDEEIQ VSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPV EELERLGMVRKVSTVPA+ELVAHRVSRYFKGCRLVDPVERTLALIKPDAT N G+ILNRVEQEGFVVVGKIEGR WSQQDAATFYSEHRGKAFFDTLVDFMSSGPIVQLCLEKVGAIKAW+ELAGPTNSTDAKT EP+SIR
Sbjct:    1 MVALLKEAILKGDSKRFLLDGFPRSKDNLEAWFDAFSDEEIQ-VSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVFEELERLGMVRKVSTVPAQELVAHRVSRYFKGCRLVDPVERTLALIKPDATGNTGEILNRVEQEGFVVVGKIEGRMWSQQDAATFYSEHRGKAFFDTLVDFMSSGPIVQLCLEKVGAIKAWKELAGPTNSTDAKTLEPSSIR 233          
BLAST of mRNA_Ecto-sp13_S_contig18993.6020.1 vs. uniprot
Match: A0A835YVW4_9STRA (UMP-CMP kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVW4_9STRA)

HSP 1 Score: 300 bits (767), Expect = 7.580e-93
Identity = 157/303 (51.82%), Postives = 204/303 (67.33%), Query Frame = 1
Query:    1 MERNEVVFVLGGPGSGKGTHCARIAADFGYTHLSTGDLLREEQKKESELAIKIAECIRDGQLVPSSTMVALLKEAILKGDSRRFLLDGFPRSKDNLEAWFGAFSDEEIQQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELERLGMVRKVSTVPARELVAHRVSRYFKGCRLVDPVERTLALIKPDATRNAGD--ILNRVEQEGFVVVGKIEGRSWSQQDAATFYSEHRGKAFFDTLVDFMSSGPIVQLCLEKVGAIKAWRELAGPTNSTDAKTSEPTSIR 903
            + R  VVFVLGGPGSGKGT CA I  +FGYTHLS GDLLREEQ   S++   I   I++G++VP    + LLK A+ +  +R FL+DGFPRS +N+E WF    D  + +V+F LF  CP+E + +RLL+RG TSGRADDN  ++ KRF TF   S+PVVE L RLG VR VS  P  E+V  RVSR+FKG  ++ P ERTLA+IKPDA     +  ++ R+EQEGFV+V K +  + + +    FY EH GK FF+ L  FM+SGP   L LE+V AI+AWR L GPTN+  A+  +P S+R
Sbjct:  212 IRRYSVVFVLGGPGSGKGTQCANIVREFGYTHLSAGDLLREEQNCGSDVGEMIKTFIKEGKIVPVEVTIRLLKTAMERSGARDFLIDGFPRSFENMEGWFKEMGD--VAEVAFVLFFDCPEEVMAERLLKRGATSGRADDNEASIRKRFVTFRDTSMPVVEALARLGKVRIVSAAPPPEVVFARVSRFFKGLAMIPPTERTLAIIKPDAMAAGSEPAMIQRLEQEGFVIVEK-KTETLTSEKVDGFYQEHIGKPFFEGLKKFMTSGPCTALSLERVDAIRAWRNLLGPTNTEKARAEKPDSLR 511          
BLAST of mRNA_Ecto-sp13_S_contig18993.6020.1 vs. uniprot
Match: A0A6V1RU54_HETAK (UMP-CMP kinase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RU54_HETAK)

HSP 1 Score: 299 bits (766), Expect = 9.560e-93
Identity = 152/303 (50.17%), Postives = 205/303 (67.66%), Query Frame = 1
Query:    1 MERNEVVFVLGGPGSGKGTHCARIAADFGYTHLSTGDLLREEQKKESELAIKIAECIRDGQLVPSSTMVALLKEAILKGDSRRFLLDGFPRSKDNLEAWFGAFSDEEIQQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELERLGMVRKVSTVPARELVAHRVSRYFKGCRLVDPVERTLALIKPDATR--NAGDILNRVEQEGFVVVGKIEGRSWSQQDAATFYSEHRGKAFFDTLVDFMSSGPIVQLCLEKVGAIKAWRELAGPTNSTDAKTSEPTSIR 903
            + + +V+FVLGGPGSGKGT CA +  D+G+ HLS GDLLREE+++    A  I   IR+G++VP    V L+K A+ +   R+FL+DGFPRS DN E WF    D+    VS  LF  CP+E + +RLL+RGE+SGR DDN+E + KRF TF  +S+PVVE   RLG+VR+VS+V   ++V  +V +   G  L  P +RTLA+IKPDA R   A +I+ R++ EGFVVV + E  + S+     FY+EH+GK+FF+TL  FM+SGP+  LCLEK GA+K WR L GPTN+  AK   P S+R
Sbjct:  212 LTKPQVIFVLGGPGSGKGTQCANLVRDYGFVHLSAGDLLREERQRGGPNAELIENYIREGKIVPVEITVGLIKAAMEQSGGRKFLVDGFPRSLDNTEGWFAVMGDDVA--VSMVLFFDCPEEVMTQRLLKRGESSGRIDDNIEAIQKRFRTFRDQSMPVVENFRRLGLVREVSSVAPVDVVYSKVRQLLDGLALCPPRQRTLAMIKPDAVRAGKADEIVQRLQAEGFVVVARKEA-TLSRAQVEEFYAEHKGKSFFETLAGFMTSGPMQALCLEKEGAVKGWRALMGPTNTEKAKAEAPQSLR 511          
BLAST of mRNA_Ecto-sp13_S_contig18993.6020.1 vs. uniprot
Match: F6UHS2_CIOIN (UMP-CMP kinase n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6UHS2_CIOIN)

HSP 1 Score: 180 bits (457), Expect = 1.430e-52
Identity = 94/193 (48.70%), Postives = 127/193 (65.80%), Query Frame = 1
Query:    1 MERNEVVFVLGGPGSGKGTHCARIAADFGYTHLSTGDLLREEQKK-ESELAIKIAECIRDGQLVPSSTMVALLKEAILKGDSRRFLLDGFPRSKDNLEAWFGAFSDEEIQQ---VSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELERLGMVRKVSTVPARELVAHRVSRYF 567
            M + ++VFVLGGPG+GKGT C++I   FGYTHLS GDLLR E+K   S++   I  CI++G++VP      LLK AI    + +FL+DGFPR+KDNL+ W     DEE+     V F L+L CP+E   KR+L RG TSGR DDNVE++ KRF T+  E+LP+++  E+ G VR V T    + V  RV ++F
Sbjct:   24 MSKPQIVFVLGGPGAGKGTQCSKIVETFGYTHLSAGDLLRAERKNPSSKVGTLIERCIKEGKIVPVKITCGLLKTAIFANKNTKFLIDGFPRNKDNLDGW-----DEEMGDKVDVQFILYLDCPEEVCTKRILNRGLTSGRTDDNVESLKKRFQTYVNETLPIIKHYEKDGKVRSVVTDCTPDEVFERVRKHF 211          
BLAST of mRNA_Ecto-sp13_S_contig18993.6020.1 vs. uniprot
Match: A0A7S0M1V9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M1V9_9CRYP)

HSP 1 Score: 184 bits (467), Expect = 8.140e-52
Identity = 95/189 (50.26%), Postives = 128/189 (67.72%), Query Frame = 1
Query:    1 MERNEVVFVLGGPGSGKGTHCARIAADFGYTHLSTGDLLREEQKKESELAIKIAECIRDGQLVPSSTMVALLKEAILKGDSRRFLLDGFPRSKDNLEAWFGAFSDEEIQQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELERLGMVRKVSTVPARELVAHRVSRYF 567
            + + +VVFVLGGPG+GKGT CA I  ++G+ HLS GDLLR E++  SE A  I   I++G++VP    V LL  A+ K   ++FL+DGFPRS DN + W+    D+   +V+F LF  CP+EEL+KRLL+RGETSGR DDN+E++ KRF TF++ S+PVVE     GM+R VS+V   E V     R F
Sbjct:  169 VPKPQVVFVLGGPGAGKGTQCANIVREYGWVHLSAGDLLRAERESGSENAAMINSFIKEGKIVPVEVTVKLLLAAMEKNPGKKFLIDGFPRSMDNKDGWYSVVGDKA--EVAFCLFYDCPEEELEKRLLKRGETSGRDDDNIESIKKRFRTFKETSMPVVEWFGSRGMLRTVSSVQTVEEVWAATKRVF 355          
BLAST of mRNA_Ecto-sp13_S_contig18993.6020.1 vs. uniprot
Match: UPI0009E5DDD4 (UMP-CMP kinase-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5DDD4)

HSP 1 Score: 177 bits (449), Expect = 2.340e-51
Identity = 83/186 (44.62%), Postives = 127/186 (68.28%), Query Frame = 1
Query:   16 VVFVLGGPGSGKGTHCARIAADFGYTHLSTGDLLREEQKKESELAIKIAECIRDGQLVPSSTMVALLKEAILKGDSRRFLLDGFPRSKDNLEAWFGAFSDEEIQQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELERLGMVRKVSTVPARELVAHRVSRYFKG 573
            V+FVLGGPG+GKGT C RI  +FGY HLS GDLLREE+   SE    I  CI++G++VP    ++L+++A+ K   ++FL+DGFPR++DNL+ W      E    VS  LF  C ++E  KR++ERG++SGR+DDN+E++ KRF T+E +++P++E  ++LG+VRK+  + + + V   V    + 
Sbjct:   27 VIFVLGGPGAGKGTQCERIVEEFGYIHLSAGDLLREERASGSENGDLIESCIKEGKIVPVEITISLIEKAMNKNSVKKFLIDGFPRNEDNLQGWKRVM--EGKVDVSCVLFFECAEDECIKRIMERGKSSGRSDDNIESLRKRFYTYETQTMPIIEHYQKLGLVRKIQAIKSPDEVFEEVQSVLRS 210          
BLAST of mRNA_Ecto-sp13_S_contig18993.6020.1 vs. uniprot
Match: H2ZHH9_CIOSA (UMP-CMP kinase n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZHH9_CIOSA)

HSP 1 Score: 176 bits (445), Expect = 4.740e-51
Identity = 89/189 (47.09%), Postives = 128/189 (67.72%), Query Frame = 1
Query:    4 ERNEVVFVLGGPGSGKGTHCARIAADFGYTHLSTGDLLREEQKK-ESELAIKIAECIRDGQLVPSSTMVALLKEAILKGDSRRFLLDGFPRSKDNLEAWFGAFSDEEIQQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELERLGMVRKVSTVPARELVAHRVSRYF 567
            ++ ++VFVLGGPG+GKGT CA+I   FGYTHLS GDLLR E+K  ESE+   I   I +G++VP      LL++AI   ++ +FL+DGFPR++DNL  W     D+   +V F L+L CPKE   +R+L RG+TSGR+DDNVE++ KRF+T+  E++P+++  E    VR V T  + + V  RV ++F
Sbjct:    4 KKPQIVFVLGGPGAGKGTQCAKIVEKFGYTHLSAGDLLRAERKNPESEVGNLIETYITEGKIVPVKITCGLLEKAISSSENNKFLIDGFPRNEDNLTGWSDQMGDKV--EVKFVLYLDCPKEICTERILNRGKTSGRSDDNVESLHKRFETYVNETIPIIKHYEAENKVRHVLTEVSADEVFERVKKHF 190          
BLAST of mRNA_Ecto-sp13_S_contig18993.6020.1 vs. uniprot
Match: W4G8P5_9STRA (UMP-CMP kinase n=6 Tax=Aphanomyces TaxID=100860 RepID=W4G8P5_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.180e-50
Identity = 89/203 (43.84%), Postives = 132/203 (65.02%), Query Frame = 1
Query:    7 RNEVVFVLGGPGSGKGTHCARIAADFGYTHLSTGDLLREEQKKESELAIKIAECIRDGQLVPSSTMVALLKEAILKGDSRRFLLDGFPRSKDNLEAWFGAFSDEEIQQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELERLGMVRKVSTVPARELVAHRVSRYFKGC---RLVDPVERTL 606
            R++V+FVLGGPGSGKGT C++I A FG+ HLS GDLLREE+   S     I   IRDG +VP    + L+++A+L+     FL+DGFPR+ DNLE W    +D ++  V   LF  CP+EE++KRLLERG+TSGR DDN++ + KRF T+ + ++P++E       V ++S++P+ ++V    ++  +      LVD  +R L
Sbjct:    7 RSKVLFVLGGPGSGKGTQCSKIVAKFGFVHLSAGDLLREERSSGSPNGDMIDRMIRDGAIVPVKVTLDLIRKAMLESGRDLFLIDGFPRNFDNLEGWEAEMTDVDVAGV---LFYDCPEEEMEKRLLERGKTSGRTDDNIDAIRKRFTTYLESTMPIIEHFALKDQVFRISSIPSPDVVFDETAKVIEPIVKRHLVDSTQRLL 206          
BLAST of mRNA_Ecto-sp13_S_contig18993.6020.1 vs. uniprot
Match: A0A7S2C1B9_9STRA (UMP-CMP kinase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1B9_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.160e-50
Identity = 94/199 (47.24%), Postives = 133/199 (66.83%), Query Frame = 1
Query:    4 ERNEVVFVLGGPGSGKGTHCARIAADFGYTHLSTGDLLREEQKKESELAIKIAECIRDGQLVPSSTMVALLKEAILKGDSRRFLLDGFPRSKDNLEAWFGAFSDEEIQQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELERLGMVRKVSTVPARELVAHRVSRYFKGCRLVDPVER 600
            +R +VVFVLGGPGSGKGT CARI  +FG+ HLS GDLLR E+K  SEL   I   I+ G +VP+   V LL EA+ K ++  FL+DGFPR+ DNLE W    +  +++   F L L CP+E +++RLL+RGETSGR+DDN+E++ KRF T+++ ++PVV+   +   VR+V +  A E V   V      C + +P+E+
Sbjct:   39 DRPKVVFVLGGPGSGKGTMCARIVEEFGFMHLSAGDLLRAERKSGSELGDMIEGHIQAGSIVPAEVTVRLLDEAMKKSEATCFLVDGFPRNADNLECWVKLMTHCKVE---FVLMLECPEEVMEQRLLKRGETSGRSDDNIESIRKRFKTYKESTMPVVQVFAKENKVREVVSDRAPEEVYADVRTAI--CEVTEPLEQ 232          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18993.6020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4L5_ECTSI3.680e-19994.68NDK domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KI40_9PHAE1.200e-14994.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVW4_9STRA7.580e-9351.82UMP-CMP kinase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A6V1RU54_HETAK9.560e-9350.17UMP-CMP kinase n=2 Tax=Heterosigma akashiwo TaxID=... [more]
F6UHS2_CIOIN1.430e-5248.70UMP-CMP kinase n=1 Tax=Ciona intestinalis TaxID=77... [more]
A0A7S0M1V9_9CRYP8.140e-5250.26Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
UPI0009E5DDD42.340e-5144.62UMP-CMP kinase-like n=1 Tax=Orbicella faveolata Ta... [more]
H2ZHH9_CIOSA4.740e-5147.09UMP-CMP kinase n=1 Tax=Ciona savignyi TaxID=51511 ... [more]
W4G8P5_9STRA1.180e-5043.84UMP-CMP kinase n=6 Tax=Aphanomyces TaxID=100860 Re... [more]
A0A7S2C1B9_9STRA2.160e-5047.24UMP-CMP kinase n=1 Tax=Florenciella parvula TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18993contigEcto-sp13_S_contig18993:23..3073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score562.8
Seed ortholog evalue9.9e-158
Seed eggNOG ortholog2880.D7G4L5
Preferred nameRSP23
Model size906
KEGG rclassRC00002
KEGG koko:K00939,ko:K00940,ko:K13800,ko:K19868,ko:K20790
KEGG ReactionR00124,R00127,R00139,R00156,R00158,R00330,R00512,R00570,R00722,R01137,R01547,R01665,R01857,R02093,R02326,R02331,R03530,R11319,R11891,R11892,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00730,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00730,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.cytidylate kinase activity
EggNOG OGsCOG0105@1,COG0563@1,KOG0888@2759,KOG3079@2759
Ec32 ortholog descriptionNucleoside diphosphate kinase
Ec32 orthologEc-07_000140.1
EC2.7.4.14,2.7.4.3,2.7.4.6
Cds size906
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18993.6020.1prot_Ecto-sp13_S_contig18993.6020.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18993 23..3073 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462968.9621577-CDS-Ecto-sp13_S_contig18993:22..1091681462968.9621577-CDS-Ecto-sp13_S_contig18993:22..109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18993 23..109 -
1681462968.97588-CDS-Ecto-sp13_S_contig18993:395..5581681462968.97588-CDS-Ecto-sp13_S_contig18993:395..558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18993 396..558 -
1681462968.9854171-CDS-Ecto-sp13_S_contig18993:780..9321681462968.9854171-CDS-Ecto-sp13_S_contig18993:780..932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18993 781..932 -
1681462968.9965274-CDS-Ecto-sp13_S_contig18993:1065..12421681462968.9965274-CDS-Ecto-sp13_S_contig18993:1065..1242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18993 1066..1242 -
1681462969.0045755-CDS-Ecto-sp13_S_contig18993:2028..21821681462969.0045755-CDS-Ecto-sp13_S_contig18993:2028..2182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18993 2029..2182 -
1681462969.0128386-CDS-Ecto-sp13_S_contig18993:2470..25831681462969.0128386-CDS-Ecto-sp13_S_contig18993:2470..2583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18993 2471..2583 -
1681462969.0228808-CDS-Ecto-sp13_S_contig18993:3013..30731681462969.0228808-CDS-Ecto-sp13_S_contig18993:3013..3073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18993 3014..3073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18993.6020.1

>prot_Ecto-sp13_S_contig18993.6020.1 ID=prot_Ecto-sp13_S_contig18993.6020.1|Name=mRNA_Ecto-sp13_S_contig18993.6020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp
MERNEVVFVLGGPGSGKGTHCARIAADFGYTHLSTGDLLREEQKKESELA
IKIAECIRDGQLVPSSTMVALLKEAILKGDSRRFLLDGFPRSKDNLEAWF
GAFSDEEIQQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFD
TFEKESLPVVEELERLGMVRKVSTVPARELVAHRVSRYFKGCRLVDPVER
TLALIKPDATRNAGDILNRVEQEGFVVVGKIEGRSWSQQDAATFYSEHRG
KAFFDTLVDFMSSGPIVQLCLEKVGAIKAWRELAGPTNSTDAKTSEPTSI
R*
back to top

mRNA from alignment at Ecto-sp13_S_contig18993:23..3073-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18993.6020.1 ID=mRNA_Ecto-sp13_S_contig18993.6020.1|Name=mRNA_Ecto-sp13_S_contig18993.6020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3051bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18993:23..3073- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCGCAACGAAGTCGTCTTCGTCCTGGGGGGTCCCGGCTCAGGCAA AGGCACCCATGTAAGATACCGCGCCAGTGACGGAGCTCAATGTTGCCGTG CTGTGTCCTCGGTGCCCATTGACCTATGTAACGTAGGTGGCCTGATGAAC GGTAGTACACAAATTCGACTCAGTGCTTCTCAGTGGACGAAGAATGAATG AGGTCAAGAGACGAGACACCCACAAACAAAAACACCCTGAAATTGCGTAG ATTCAGCGTTTTCTAGCCGAAGAGAACTGCACATGCAGAACGTGTTGTCA AGCACCTTCGGAATGTGCATACGTCTGGCCAAGGAGTGACCCCGTCGTAG TCAACAGAAACAATACGTCGTATTTACCTACAGTGGCGAGTCAAGATGAG ACCTCGAAATTCATCGCCGATGTTCTCAAAATGACTCGTTAACCGTGTAC GGCCTCGGGATGTCTTCAACTGTCATGTATGGCGATGAAGTGTGCTAGGA TTGCAGCCGACTTCGGATACACTCATCTTTCCACGGGCGACCTTTTAAGA GAAGAGCAGAAGAAGGAATCGGAGCTAGCCATCAAAATTGCAGAATGCAT CAGGTGATGGCATGGTTTTAACCGGTGAGCCATAAGTGTCTGGCTGCGAA ACAAGAGGAGTACGTATTCACGGTGGTGAATATTGAAGGTTGGATTGTTG ATAGTGTGTCTCAGTGGTGAGGTTGAAAGCAAGGCTTCTTTACGATTACA ACGTCGGCAAAACTTCAGTGCAGAACACCATGGAGTACTGAACATCACGG AGTATTTACCGCCGGTATCAATCGCCCGTATCGACATTTCTAACTCTCCC CACATTACATACATGTCGGTGGCGGCATTGCGTGCTTTTAGAGATGGACA GCTCGTGCCCTCTTCAACCATGGTGGCCCTGTTGAAGGAGGCTATCCTGA AGGGCGACTCGAGGAGATTTCTATTGGACGGATTTCCCCGCAGCAAAGAC AACCTGGAGGCTTGGTTTGGTGCCTTCTCCGACGAAGAGATCCAGGTGTG AAATATGGTTCGAAACGTCATCCGTTATTGTCCAAACGAAGAACGCCTTT CATGTCTCAGAGTTTCCGTATTCACATCCTTCGTGTCGAGCTAGACTTAT CGAGAAGTTGGAACAGCCCAAGCGGGCTCCCGGAATACACACGCCGACGC TCTGCTCAGACCCACAAGATGGAGACGGCGCGCACGTGGAGGGGGGGGGT AGGCAACGCATCCCTGCCAACGCATCCCTGCGTGCACTCCGGGAGCCCCC TTCGGTGCTAGTGTATCACATTTTCGATTCTATTGACTCCCGCAATAGAG CATCGACACTGTGCCATTGAAGAGCTTCGAAATCAGCGTATAATATAGTT CCGGAAGGCCACCGCACACAAGTTTTGAACACTTGAGGCGGTCTTCGGGT GTTTCGTACAAGCTGCTGCTTCATCACTCCGACGAGCGAGGGGGAGATGG GGGGGGCAAACATGATAACAGCTGCAATGTTCATCCTAGCGCTCGGTTCC TTACGAGACCTGGGAAGAGCTTGAGGCCGGGAAACCAGGGCCACGGCTGC GTTCACAAAAAGCACACCAGGTTTCTCGCACTACAGTACATGTGCAGCAC TGCTGTCGTGTTGCCGCGTGCAGGGACTTTCACAGGATACCATGTACTGA ACATAGAATTGCCAATCAGAACCTTTGGACATCACGTCTGCTGCGATTGC TTCGTTTGTTGTGCAGAGCATGTGCGTGGATCGAATCCGGTTCTCGAGTG TGTGACGTCATCTATTCGCTTCTTCTTCGAGCAGGTGTCCTTCACGCTGT TCCTACACTGCCCAAAAGAGGAGTTGAAGAAACGTCTCTTGGAGAGAGGG GAGACCTCCGGCCGGGCTGATGACAACGTAGAGACCGTGCTAAAGCGCTT CGATACCTTTGAGAAGGAATCCCTGCCCGTCGTTGAAGAGCTCGAGCGAT TGGGTATGGTAAGTAGACACCAACTAACCCTGGTTTCGAGTTTAGATCTC TGCGACTTAGGCCTCCGTTTCGAAACACGAGGTCATCGCCTCCGCCCACC TCTGTTGTGTTATTCTACCCTGCTCTCCCCTCGGAACGTAGGTGCGGAAG GTTTCTACTGTACCTGCTCGGGAGCTAGTGGCGCACCGCGTAAGTCGATA CTTCAAGGGATGCCGGCTGGTCGACCCCGTTGAGAGGACGCTCGCACTCA TCAAGCCTGACGCTACGAGAAATGCGGGCGACATCCTCAATAGGTGATAA CAACAACACTTGAAAGTTGGACTACCGCCACTTTTCCCTGTCAAAAATAG TAAGGATGACTTGTAACTCCAAGCATCGAGACTGGTTGGTGAAGCACGAC CACAGCAGGACCAAGCCCAAAACCAACGCCAGGCAATACGCTCGAACGAC TGCAGTACTCTATACAACGCCTCATGACGCAAATATCGTTCGCTACGGAT GCACCCGTTAGTCAGGGTTGAACAGGAGGGTTTCGTCGTTGTCGGAAAAA TTGAAGGCCGTTCGTGGTCCCAGCAGGACGCCGCGACCTTCTACTCGGAG CACCGTGGAAAGGCCTTCTTCGACACCCTGGTGGACTTCATGAGCAGCGG GCCAATCGTACAGCTCTGTCTGGAGAAGGTAAAGGCCACCAGGCAGATTG ATTTATTTGGTACCTTGCACCCTTGATCTCCTTCGAAGAAAACCAAGATA TATCGGCATGAACAACACTTTGGTGGTGACCATTTCAAGTGGCTATCTTC TAACAACGCTATGACGGCTTCAAGGCGAAGTCACGAACGACCACAGCAGG ATATTTTAGCAGCGTCAAGGTGAACCAAGCGGGCCACGGAATCGCACCTT TGAAAAAGTCCGAAACACCTCCCCGAACGCCCCCACCATCTCGACGACGT CCTATCTGCGTCAGGTGGGTGCAATCAAGGCCTGGAGAGAGCTGGCGGGT CCGACCAACTCAACCGACGCAAAAACCTCGGAACCGACGAGCATCAGGTG A
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18993:23..3073-

>mRNA_Ecto-sp13_S_contig18993.6020.1 ID=mRNA_Ecto-sp13_S_contig18993.6020.1|Name=mRNA_Ecto-sp13_S_contig18993.6020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18993:23..3073- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCGCAACGAAGTCGTCTTCGTCCTGGGGGGTCCCGGCTCAGGCAA
AGGCACCCATTGTGCTAGGATTGCAGCCGACTTCGGATACACTCATCTTT
CCACGGGCGACCTTTTAAGAGAAGAGCAGAAGAAGGAATCGGAGCTAGCC
ATCAAAATTGCAGAATGCATCAGAGATGGACAGCTCGTGCCCTCTTCAAC
CATGGTGGCCCTGTTGAAGGAGGCTATCCTGAAGGGCGACTCGAGGAGAT
TTCTATTGGACGGATTTCCCCGCAGCAAAGACAACCTGGAGGCTTGGTTT
GGTGCCTTCTCCGACGAAGAGATCCAGCAGGTGTCCTTCACGCTGTTCCT
ACACTGCCCAAAAGAGGAGTTGAAGAAACGTCTCTTGGAGAGAGGGGAGA
CCTCCGGCCGGGCTGATGACAACGTAGAGACCGTGCTAAAGCGCTTCGAT
ACCTTTGAGAAGGAATCCCTGCCCGTCGTTGAAGAGCTCGAGCGATTGGG
TATGGTGCGGAAGGTTTCTACTGTACCTGCTCGGGAGCTAGTGGCGCACC
GCGTAAGTCGATACTTCAAGGGATGCCGGCTGGTCGACCCCGTTGAGAGG
ACGCTCGCACTCATCAAGCCTGACGCTACGAGAAATGCGGGCGACATCCT
CAATAGGGTTGAACAGGAGGGTTTCGTCGTTGTCGGAAAAATTGAAGGCC
GTTCGTGGTCCCAGCAGGACGCCGCGACCTTCTACTCGGAGCACCGTGGA
AAGGCCTTCTTCGACACCCTGGTGGACTTCATGAGCAGCGGGCCAATCGT
ACAGCTCTGTCTGGAGAAGGTGGGTGCAATCAAGGCCTGGAGAGAGCTGG
CGGGTCCGACCAACTCAACCGACGCAAAAACCTCGGAACCGACGAGCATC
AGGTGA
back to top