mRNA_Ecto-sp13_S_contig1899.6018.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig1899.6018.1
Unique Name	mRNA_Ecto-sp13_S_contig1899.6018.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Match: D7FWW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 4.490e-18
Identity = 54/72 (75.00%), Postives = 57/72 (79.17%), Query Frame = 1

Query:    1 MASVSSSVLDDNTSEHKRRRFAGKLINAAGSLVTV----IVVTNLIIQVYVTLTVVDDWGADTREAMIKLEQ 204
            MASVSSS+L DNTSEHKRR  AGKLI + GSLV      IVV NLII+V  TLT VDDWGADTREAMIKLEQ
Sbjct:    1 MASVSSSILYDNTSEHKRR-LAGKLIYSTGSLVAAVVAEIVVLNLIIEVASTLTAVDDWGADTREAMIKLEQ 71

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Match: D8LT13_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT13_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 5.740e-18
Identity = 58/96 (60.42%), Postives = 68/96 (70.83%), Query Frame = 1

Query:  196 LEQAFSERKSQISRAVLFASLISALLLVVIPFITGVTARFVAGWVVGPINQLIYVVHALTRMDFSQQALGTWMEAREAENPDHDTWLHELDELLEA 483
            L +AFS  KSQISR V+ ASLI AL+L VI  ITG+TARFVAG +VGPINQLIYVVHAL RMDFS+Q  G  M  R +          E++EL+EA
Sbjct:  291 LLEAFSRTKSQISRVVILASLIMALVLTVIACITGITARFVAGGIVGPINQLIYVVHALNRMDFSRQVAGPHMVNRIS--------CPEVEELMEA 378

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Match: A0A6H5KL16_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL16_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.760e-15
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 1

Query:  196 LEQAFSERKSQISRAVLFASLISALLLVVIPFITGVTARFVAGWVVGPINQLIYVVHALTRMDFSQQALGTWMEAREAENPDHDTWLHELDELLEAHRKRLIKAVEFGGT 525
            L + FSE KSQISR VLFASLI AL+LV I  I  VTARFVA  +VGPINQLI  V+AL R+DFS+Q  GT +     + P +D    E+D+L+EA    +  AV+F  T
Sbjct:  413 LLETFSETKSQISRVVLFASLIMALVLVAIVCIMVVTARFVARGIVGPINQLIGAVYALNRLDFSRQPPGTRIVH---DMPSNDMLSPEVDDLVEAFES-MNTAVKFANT 518

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Match: A0A6H5K0U1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U1_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 6.910e-13
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1

Query:  229 ISRAVLFASLISALLLVVIPFITGVTARFVAGWVVGPINQLIYVVHALTRMDFSQQALGTWMEAR 423
            I R V+ ASLI AL+L VI  ITGVTARFVAG +VGPINQLIYVVHAL R+DFS+Q  G  M  R
Sbjct:  247 IPRVVILASLIMALVLTVIACITGVTARFVAGGIVGPINQLIYVVHALNRLDFSRQVAGPHMVNR 311

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Match: D7FWV2_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV2_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.180e-11
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1

Query:  196 LEQAFSERKSQISRAVLFASLISALLLVVIPFITGVTARFVAGWVVGPINQLIYVVHALTRMDFSQQ 396
            L +AFSE KSQISR  LFASLI AL+LVV+  I GVTAR VA  +V P+NQL  +VH+L RMDFS+Q
Sbjct:  414 LLEAFSETKSQISRVELFASLIMALVLVVVACIMGVTARAVACGIVIPVNQLTDIVHSLNRMDFSRQ 480

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
D7FWW2_ECTSI	4.490e-18	75.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LT13_ECTSI	5.740e-18	60.42	VWFA domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5KL16_9PHAE	1.760e-15	53.64	VWFA domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A6H5K0U1_9PHAE	6.910e-13	69.23	Reverse transcriptase domain-containing protein (F...	[more]
D7FWV2_ECTSI	3.180e-11	65.67	VWFA domain-containing protein n=1 Tax=Ectocarpus ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1899	contig	Ecto-sp13_S_contig1899:2875..6983 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	97.1
Seed ortholog evalue	1.1e-17
Seed eggNOG ortholog	2880.D8LT13
Model size	896
Hectar predicted targeting category	other localisation
Exons	4
EggNOG free text desc.	von Willebrand factor (vWF) type A domain
EggNOG OGs	2DNG0@1,2S673@2759
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-08_004620.1
Cds size	663
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462968.882226-UTR-Ecto-sp13_S_contig1899:2874..3107	1681462968.882226-UTR-Ecto-sp13_S_contig1899:2874..3107	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig1899 2875..3107 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462968.9002614-CDS-Ecto-sp13_S_contig1899:3107..3374	1681462968.9002614-CDS-Ecto-sp13_S_contig1899:3107..3374	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1899 3108..3374 -
1681462968.9130719-CDS-Ecto-sp13_S_contig1899:4057..4249	1681462968.9130719-CDS-Ecto-sp13_S_contig1899:4057..4249	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1899 4058..4249 -
1681462968.923056-CDS-Ecto-sp13_S_contig1899:4508..4615	1681462968.923056-CDS-Ecto-sp13_S_contig1899:4508..4615	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1899 4509..4615 -
1681462968.931335-CDS-Ecto-sp13_S_contig1899:6886..6983	1681462968.931335-CDS-Ecto-sp13_S_contig1899:6886..6983	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1899 6887..6983 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1899.6018.1	prot_Ecto-sp13_S_contig1899.6018.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig1899 3108..6983 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig1899:2875..6983-
coding sequence from alignment at Ecto-sp13_S_contig1899:2875..6983-

protein sequence of mRNA_Ecto-sp13_S_contig1899.6018.1

>prot_Ecto-sp13_S_contig1899.6018.1 ID=prot_Ecto-sp13_S_contig1899.6018.1|Name=mRNA_Ecto-sp13_S_contig1899.6018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MASVSSSVLDDNTSEHKRRRFAGKLINAAGSLVTVIVVTNLIIQVYVTLT
VVDDWGADTREAMIKLEQAFSERKSQISRAVLFASLISALLLVVIPFITG
VTARFVAGWVVGPINQLIYVVHALTRMDFSQQALGTWMEAREAENPDHDT
WLHELDELLEAHRKRLIKAVEFGGTPFCRKFNDHVMDFKLALAFADTLCP
ATKIAAEVLHWDSQTTVRSR*

mRNA from alignment at Ecto-sp13_S_contig1899:2875..6983-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig1899.6018.1 ID=mRNA_Ecto-sp13_S_contig1899.6018.1|Name=mRNA_Ecto-sp13_S_contig1899.6018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4109bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1899:2875..6983- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCCGTTAGTTCTTCCGTCCTCGATGACAACACCTCCGAGCACAA
GAGAAGAAGGTTTGCGGGAAAACTGATCAACGCTGCGGGCTCACTAGGTG
AGCGAGACAGGAGGCGCGCTGCCGATGAAGAAGGTTTCCACAGCAGAAGA
ACCGAGGCACACTGCTGCTCTGCTGTTATCTACTCTTAGAGACGATGTAG
ACTGCACCTTGTCCTCGCAGACGGCGCTGGGGCGGGAGCTAACGTCACTG
TAAGCTAGCTTTTTGTGCTACGTCGGTCTTCAGGGAGCTTGTGTCACAGG
TCTCCTTCTGCATCCACGAACTACAAACGCAACCCGTAAGCTAAAGCAGA
GACGGCCGTTAGCTCTGCATACATACGCGGGCGGTAGTTTCGGTTTTCAA
GGTGGGCGAGGGAGGGCGTCCGACCGCGACGAGCGACGGAGAGAATGCGG
CGCGATTGACCGCCCAACATGGCCCGATACGGTCCAACCTCCTGAGCGCC
AACAATGAAACCCAACTCAACACACAACCCCGACCTCAATCGCACGTCAT
AACAACAGGTAGGTGTAGCTGTGAAATTACTGCTGCAGCACTGCAACAGC
AGTATAGACACACGTGCATTGCACGACCCGCCCCAGCCTGAGAATCCAAA
CCTACGTTGTGCTCAACAGAAATAGTTCTGTACTCCTCCCCCCTTCTCTG
ACTGCTGCAGTGGAAACACTCGTTGCGCCGCGACCGTGCCTCAGCCGGTC
GGGGGACACACCGCACAGCAGCTTGTGTGCTGTGCTCTCTGCCTCCACGC
CAAAGAGGCGGGGGCTAACACACTTTTCCACCGGCAAAGAAGAGCAAACC
TCTGTCGACAAAAATTGAGCACGAAAACATAAAGGATCCCGACGTTCGCC
GTCTTCTCTAGAAGTTGTGTGTGAAAAATCGGGGCAGGAGGGGTGGTAGG
AGGAGAGACGGCATTATGCACGATCTCTGGTAATTTGCGGCTGATCGGGC
CCACGTATGTTGTCTGGTTCATTTATAGAAGAGGCAAGAACTGGCGTGCG
AACAGACTGCCGGCGGCATCCTCGGCGACTGACGGTCTCGGCGCTGTTCG
TTAGACGGACTTATCCACTAGACGACTCAGTTAGCAGCGCTGACTGAGAA
GTCTAGTGGATAAGTCCACATCTAGCGAACAAAAGATATGCTGTTGGGAT
CCAATCCCGTCTCATCAGGTGTACAGTGATCTCCGGGGACGCGCCCCCCC
TCGCCATACGCTACTGATTCCCTCTGTGGGGGCGGTCCTCCCGCCTGCTA
GTGTTGGCGGTCCTCCCGCCCGCCATCCAACGCGCCCTTTCTCCACTCCC
CGGGAAAAAGGCGTACACCTGATGAGAACCGAACTCCCGGGCTGACTGAG
TGGTCTAGTGGATAAGCCCATCGAACGAACAGGCGCTTCTCTAAAAAAAA
GTACCAGGTAGATGCACAGTCTACCTCTTCCACAATCTATCCTGACATGT
GTACTTTCGACGATAACATGTTGTGAAAAAGAAGCAAGAACAAGTCCGTC
TGATAGCGTGGCCGTACGGCTATCGCAGGGTTGGCATAGATCGGAGAGTT
AGCAAGGAGAGTTAGCACCGAGGTACGAAAAATTGCAAGCACGGCACATG
GTGGTGAGAAACTATCGCACCGTGGTGCCAACTCTCCGATTCCTACTGGT
TGTTGCGGTAGTCTACAGTAATAGTGTCATGTTGGTGGAATGTTCCATGG
AATCGGTGTTGTCAACCGTTCCATGGAAGCTCCCATCACTTCCATACAAG
TTTCCACCACTTCCACAGACACCGTGATGAAAGTCGCAGAAGATCGCCGG
CAGAGACTCTTGACGCACGCGTGTTTTCTGCGTCAAGTTCCGCAAAGTAG
TCGGCAGCGTTTGTTTGGAGGCTCAACCCGGGGTTTAACGGAGGCCACTC
AAAAGTTGCTTCAGTTCTGAACCATTTTGAACAGTATTCAGAATCACACA
TAGTCTAATCGTGCCTCCAAAGAAGTGGTGCCGAGATCGTGCGGTAGGCC
TGGAAAAGGTGGTTATAGGATGCACCGTGGGAAAATTGTGTTCCGAGCCG
TCGCCGGCATCTTCAAGCGCGTTATCCACGGACATATAGTACACGGGGTA
CAATATTCAAGAAGAACCATCCTCGCACGGACAGGTTCCGAGCGCGCTGC
CCCTGGTACCCACTGTTCTAGTTTGGTGGTTCGAACAGACAACGGGAGCG
AGTACGTGGATATTCCTGCGACCCAATGCTCGCCGTTTCGGTCTTTGCTT
TGACGATATCGCCCCGCCTCCGCCGTTTCCGTCACTCTTTCGCCCTTGTT
CTCCGGACGCGGCGGCAGTCACGGTGATCGTCGTGACCAACCTCATCATT
CAGGTTTATGTTACCCTCACGGTTGTTGACGACTGGGGTGCTGACACAAG
GGAGGCGATGATTAAGCTCGAGCAGGTACGAGGTGTTATTGCACGTACCC
TGGTGTATGGTGCCCTTGGTTGACGTGTTCTCCGGCGGTCGGCGACCGCT
TGCAACGCAACCTGCATGCGATCAGTACAGAGGGAGTCTAGACTCCGCTA
AAGAGAAGGTTGTTCATGTCTTGCCGATATGTTGTGCTGATGATTCTACC
CCTCTCTGTGTTTCTCTTCGCCGCTCCCTTCCTGCCGCTACTTCTCTTTC
GCGTGGCGTATCGGCACGCCCGTGATCTATCTAGGCCTTCTCCGAGAGGA
AATCACAGATTTCCCGGGCGGTTCTCTTCGCGAGTCTCATATCGGCCCTG
CTGTTGGTCGTCATTCCCTTCATCACGGGTGTCACTGCTCGATTCGTGGC
TGGCTGGGTCGTGGGACCGATCAACCAGCTCATTTACGTCGTGCACGCAC
TCACCAGGATGGATTTTTCGCAGCAGGTAAAATCCCGGCTGCGTCTGTCT
CGGCCTGGTGCTTCACCGCTGCCTCGTGGCTGGTTGGCGATACGTCCCAC
GTGCTCTGTCCCGATTATCAAAGTCTTGGTTTTTGAAGCTCCACTCACAG
TTGCTCTGTACCTTGCGGTCGCCTTCTCCGCTGAAGGGCTCTGATCCAGA
GTCATGAACATGTTATTGGGTGTATGCCATATGCATCACGCAACTGTTGC
AGAAAGTGTTGTTCCCGCGCGTACTTACCAAAACATGAATGCGCGATAAC
ACCGGTTGAGGAGCGCAACGCACTAAGAGACTCACGATTCGCTGCGAGAT
TCGACCTCAAAGCTCGACCTGGAGAAGGCACACGATGTTTTCAAGAGAAT
CCCGGTGGCCTTCGGCCGAGGGACCCCGTTGTGTCATCTCCGCCAAACAT
GTCGTTACGCATGCTCCCACTCCCGTATCGTAAGTATCCGCCGGTGAGCT
GTATTTTTTCCACAACACACGCGCGGGAGTGGTGGCTCCCGGTGATTGAA
GAGCCACCACAGAAGTGAGTGCCCACGTCATCATCCTTCTGACGTTTGCA
AGCGCTCCTGCACAAGCAGTATGTCCACGTCGTCATTTGATGCCGGTGTC
AATAATCTCGCAAAAGCTCCCTTCACGCCTGTTTGTATGCGTGCGCACGC
GTGGTACAGGCGCTAGGGACTTGGATGGAGGCAAGGGAGGCAGAAAATCC
GGACCACGACACGTGGCTCCACGAGCTTGATGAGTTGTTGGAAGCCCACC
GGAAACGATTAATCAAGGCCGTGGAGTTTGGCGGCACGCCGTTCTGCAGG
AAGTTTAACGACCACGTCATGGACTTCAAGCTTGCCCTCGCCTTCGCCGA
TACGCTTTGCCCAGCCACAAAGATTGCGGCCGAGGTCCTGCACTGGGACT
CGCAGACAACGGTGAGGAGTCGATGACCTGGTACATGCGCTGCGAGACGC
TCCACTTGGCCTTCACGAACCCAAACAATTATCGACTTCTGCTGTAAATC
GCCGTGTAGACTAATTGTTTCTCTCTCTGTTGATTACTAGGGTAACCCTT
TCAACAGTAATGAACGCCCTAAATGAAGGCCGCCTGACGGAGGTGGAATG
GCCGGCCGCCCGTTAGGCGGGATGGCCACCGGGAGGTAAAGACGATGGAC
GGAAAAGAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1899:2875..6983-

>mRNA_Ecto-sp13_S_contig1899.6018.1 ID=mRNA_Ecto-sp13_S_contig1899.6018.1|Name=mRNA_Ecto-sp13_S_contig1899.6018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1899:2875..6983- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCCGTTAGTTCTTCCGTCCTCGATGACAACACCTCCGAGCACAA
GAGAAGAAGGTTTGCGGGAAAACTGATCAACGCTGCGGGCTCACTAGTCA
CGGTGATCGTCGTGACCAACCTCATCATTCAGGTTTATGTTACCCTCACG
GTTGTTGACGACTGGGGTGCTGACACAAGGGAGGCGATGATTAAGCTCGA
GCAGGCCTTCTCCGAGAGGAAATCACAGATTTCCCGGGCGGTTCTCTTCG
CGAGTCTCATATCGGCCCTGCTGTTGGTCGTCATTCCCTTCATCACGGGT
GTCACTGCTCGATTCGTGGCTGGCTGGGTCGTGGGACCGATCAACCAGCT
CATTTACGTCGTGCACGCACTCACCAGGATGGATTTTTCGCAGCAGGCGC
TAGGGACTTGGATGGAGGCAAGGGAGGCAGAAAATCCGGACCACGACACG
TGGCTCCACGAGCTTGATGAGTTGTTGGAAGCCCACCGGAAACGATTAAT
CAAGGCCGTGGAGTTTGGCGGCACGCCGTTCTGCAGGAAGTTTAACGACC
ACGTCATGGACTTCAAGCTTGCCCTCGCCTTCGCCGATACGCTTTGCCCA
GCCACAAAGATTGCGGCCGAGGTCCTGCACTGGGACTCGCAGACAACGGT
GAGGAGTCGATGA