prot_Ecto-sp13_S_contig1899.6018.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1899.6018.1
Unique Nameprot_Ecto-sp13_S_contig1899.6018.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length221
Homology
BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Match: D8LT13_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT13_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 8.810e-19
Identity = 58/96 (60.42%), Postives = 68/96 (70.83%), Query Frame = 0
Query:   66 LEQAFSERKSQISRAVLFASLISALLLVVIPFITGVTARFVAGWVVGPINQLIYVVHALTRMDFSQQALGTWMEAREAENPDHDTWLHELDELLEA 161
            L +AFS  KSQISR V+ ASLI AL+L VI  ITG+TARFVAG +VGPINQLIYVVHAL RMDFS+Q  G  M  R +          E++EL+EA
Sbjct:  291 LLEAFSRTKSQISRVVILASLIMALVLTVIACITGITARFVAGGIVGPINQLIYVVHALNRMDFSRQVAGPHMVNRIS--------CPEVEELMEA 378          
BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Match: D7FWW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 9.170e-19
Identity = 54/72 (75.00%), Postives = 57/72 (79.17%), Query Frame = 0
Query:    1 MASVSSSVLDDNTSEHKRRRFAGKLINAAGSLVTV----IVVTNLIIQVYVTLTVVDDWGADTREAMIKLEQ 68
            MASVSSS+L DNTSEHKRR  AGKLI + GSLV      IVV NLII+V  TLT VDDWGADTREAMIKLEQ
Sbjct:    1 MASVSSSILYDNTSEHKRR-LAGKLIYSTGSLVAAVVAEIVVLNLIIEVASTLTAVDDWGADTREAMIKLEQ 71          
BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Match: A0A6H5KL16_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL16_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.990e-16
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 0
Query:   66 LEQAFSERKSQISRAVLFASLISALLLVVIPFITGVTARFVAGWVVGPINQLIYVVHALTRMDFSQQALGTWMEAREAENPDHDTWLHELDELLEAHRKRLIKAVEFGGT 175
            L + FSE KSQISR VLFASLI AL+LV I  I  VTARFVA  +VGPINQLI  V+AL R+DFS+Q  GT +     + P +D    E+D+L+EA    +  AV+F  T
Sbjct:  413 LLETFSETKSQISRVVLFASLIMALVLVAIVCIMVVTARFVARGIVGPINQLIGAVYALNRLDFSRQPPGTRIVH---DMPSNDMLSPEVDDLVEAFES-MNTAVKFANT 518          
BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Match: A0A6H5K0U1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U1_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.340e-13
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0
Query:   77 ISRAVLFASLISALLLVVIPFITGVTARFVAGWVVGPINQLIYVVHALTRMDFSQQALGTWMEAR 141
            I R V+ ASLI AL+L VI  ITGVTARFVAG +VGPINQLIYVVHAL R+DFS+Q  G  M  R
Sbjct:  247 IPRVVILASLIMALVLTVIACITGVTARFVAGGIVGPINQLIYVVHALNRLDFSRQVAGPHMVNR 311          
BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Match: D7FWV2_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV2_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 6.850e-12
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 0
Query:   66 LEQAFSERKSQISRAVLFASLISALLLVVIPFITGVTARFVAGWVVGPINQLIYVVHALTRMDFSQQ 132
            L +AFSE KSQISR  LFASLI AL+LVV+  I GVTAR VA  +V P+NQL  +VH+L RMDFS+Q
Sbjct:  414 LLEAFSETKSQISRVELFASLIMALVLVVVACIMGVTARAVACGIVIPVNQLTDIVHSLNRMDFSRQ 480          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1899.6018.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LT13_ECTSI8.810e-1960.42VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FWW2_ECTSI9.170e-1975.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL16_9PHAE2.990e-1653.64VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K0U1_9PHAE1.340e-1369.23Reverse transcriptase domain-containing protein (F... [more]
D7FWV2_ECTSI6.850e-1265.67VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 48..79
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 100..220
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 80..99
NoneNo IPR availableTMHMMTMhelixcoord: 25..47
NoneNo IPR availableTMHMMTMhelixcoord: 76..98
NoneNo IPR availableTMHMMTMhelixcoord: 105..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1899contigEcto-sp13_S_contig1899:3108..6983 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1899.6018.1mRNA_Ecto-sp13_S_contig1899.6018.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1899 2875..6983 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1899.6018.1 ID=prot_Ecto-sp13_S_contig1899.6018.1|Name=mRNA_Ecto-sp13_S_contig1899.6018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MASVSSSVLDDNTSEHKRRRFAGKLINAAGSLVTVIVVTNLIIQVYVTLT
VVDDWGADTREAMIKLEQAFSERKSQISRAVLFASLISALLLVVIPFITG
VTARFVAGWVVGPINQLIYVVHALTRMDFSQQALGTWMEAREAENPDHDT
WLHELDELLEAHRKRLIKAVEFGGTPFCRKFNDHVMDFKLALAFADTLCP
ATKIAAEVLHWDSQTTVRSR*
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