mRNA_Ecto-sp13_S_contig1898.6015.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1898.6015.1
Unique NamemRNA_Ecto-sp13_S_contig1898.6015.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1898.6015.1 vs. uniprot
Match: D8LF67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF67_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 1.300e-96
Identity = 152/174 (87.36%), Postives = 159/174 (91.38%), Query Frame = 1 
Query:   61 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNTKTGGGRKAAGPGGRREGWLARAKISNQKARKISVLASLDRPHHDGRPQHT---TCRALCFPLSFTRRQHRPVCVRRRGSSVPGSIRGRKEGNACMYDSGGHQEARSKASGQWGGRSNRIPERQEA 573
            MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNT+TG GRKAAGPGGRREGWLARAKISNQKARKISVLASLD P  DGRPQ T   +C  LCFP+ FTRRQHRP  VRRRGSSVPGSIRGRKEGNACMYDSG HQEAR++ASG+WGGR NR+PERQEA
Sbjct:    1 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNTETGAGRKAAGPGGRREGWLARAKISNQKARKISVLASLDTPPDDGRPQQTYDVSC-PLCFPVFFTRRQHRPS-VRRRGSSVPGSIRGRKEGNACMYDSGRHQEARAEASGKWGGRGNRVPERQEA 172
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BLAST of mRNA_Ecto-sp13_S_contig1898.6015.1 vs. uniprot
Match: A0A6H5L6K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K8_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.970e-44
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 1 
Query:   61 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNTKTGGGRKAAGPGGRREGWLARAKISNQKARKISVLAS 318
            MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKK + +TGGGRK+AGPGGRREGWLARAKISNQKARKISVL S
Sbjct:    1 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKASKETGGGRKSAGPGGRREGWLARAKISNQKARKISVLVS 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1898.6015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF67_ECTSI1.300e-9687.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6K8_9PHAE1.970e-4493.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1898contigEcto-sp13_S_contig1898:5483..8435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size674
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionSignal recognition particle, SRP9/SRP14 subunit
Ec32 orthologEc-06_001860.2
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462968.53793-UTR-Ecto-sp13_S_contig1898:5482..55801681462968.53793-UTR-Ecto-sp13_S_contig1898:5482..5580Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1898 5483..5580 -
1681462968.5886676-UTR-Ecto-sp13_S_contig1898:8375..84351681462968.5886676-UTR-Ecto-sp13_S_contig1898:8375..8435Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1898 8376..8435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462968.5490081-CDS-Ecto-sp13_S_contig1898:5580..57411681462968.5490081-CDS-Ecto-sp13_S_contig1898:5580..5741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1898 5581..5741 -
1681462968.5589514-CDS-Ecto-sp13_S_contig1898:6143..62461681462968.5589514-CDS-Ecto-sp13_S_contig1898:6143..6246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1898 6144..6246 -
1681462968.5688426-CDS-Ecto-sp13_S_contig1898:8123..83751681462968.5688426-CDS-Ecto-sp13_S_contig1898:8123..8375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1898 8124..8375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1898.6015.1prot_Ecto-sp13_S_contig1898.6015.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1898 5581..8375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1898.6015.1

>prot_Ecto-sp13_S_contig1898.6015.1 ID=prot_Ecto-sp13_S_contig1898.6015.1|Name=mRNA_Ecto-sp13_S_contig1898.6015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNTK
TGGGRKAAGPGGRREGWLARAKISNQKARKISVLASLDRPHHDGRPQHTT
CRALCFPLSFTRRQHRPVCVRRRGSSVPGSIRGRKEGNACMYDSGGHQEA
RSKASGQWGGRSNRIPERQEA*
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mRNA from alignment at Ecto-sp13_S_contig1898:5483..8435-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1898.6015.1 ID=mRNA_Ecto-sp13_S_contig1898.6015.1|Name=mRNA_Ecto-sp13_S_contig1898.6015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2953bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1898:5483..8435- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAACAGGCGGTGGGTGACACACCTGCTGCGTAACAGGTGCTGGGGAAGC
AGAGAGCAAGATGGTCTTGCTGGATTCGGCAGATTCCTTCTTCGTCGAGT
TGGAGCAGATGTTTGCGCTGTGCAAACAGCGAGGAGCAGGAACAGTCTAC
ACCACACTGAAGAAAGTAGAGGCTGGGAACAAGCAGCAGCTCAAGAAGGG
AAATACGAAGACAGGGGGAGGACGAAAGGCGGCGGGTCCCGGAGGAAGGA
GAGAAGGATGGCTTGCTCGCGCCAAAATATCGAACCAAAAAGCCCGCAAG
ATATCCGTACTGGTAAGGAAATTCGATGAGGTTACATATTTGAGCAGCTT
TGCTGGTGACTGCTGCTGGTGTGGTGTTTTTGCGAGCGAGAGGATCGACG
TCCCAACTGGCAAAAGAGAGCCAGCTTTCATTGTGCCCTGCTACACTAGC
AAAGCTTGCTTACAAGACCCACCACTTGATGCGTACTCGATGCACACCTT
TCGGGTGCTCAACTTGCAGCAGACTTTTGGAAAAACTATCTCGTTTAGAA
TGGTGTCATAATGTCTACATACGCTTTCCAGAGAGCTTTGCGAGGAACAG
GTGCCCGATATGGCCGTGCAATGGAGGAACGCCCACCGTAAGAGGCAGAG
ATGGCACCCCCCTAGACCGATTCAAAACTCGATTACTCCACAACCAAGCT
TGTGCCAACACCAACAATGGTGGTATTTGGAAACATCTCGTCGACGGCTT
TCCCTAGACGTATCGAGCGCTTTACGCACCCACTTGGCTACGGAGCAATC
GAGCTGTGAAAGTCGGTCGACACTGCTGTATCGGGGGTGCCGTCTCTCCG
CCTTTCATGGTAGTTGATGGTCTTTCAACATCGCCCCCTCAGGTTGGTTG
CTTCCCCGAGCTTTGAGTACTGTTATCGCAGAACGATTGCCGTACATCCA
AACATTGGGCACGTGATTGCAGACCAACGAGCTCTATACGCACAGCGCCA
TATACCCCCGAGCCTCGGAGTACTTCGGTATGCGTGGTTGGTTGCATCAA
CTGGGCTATGGATAGACCAACCGAAGCTGCTGACTTCACGCGACCCCGAT
ATACTACACAACAGCAGCGAGTTGTATCGAAGGTACATGCGGACCGTCTT
GATAGGGATGTTTGGTTCGACTCGCTTTTGTAGCGGCGACTTCACCCCTT
CGCCAAGCAATCGGTCTATCGCTGAGGCTGCGACGGCAAGGTGCTGATGG
AATTTCGGTAGTATAGCAGTACCTGCCCGCTTTAGAAGCCGAGATCAAAC
CATTAGACTAAACCGTCAATTGCTTAGTCTAGTGGTTTGGTTTCGGCTTC
TACCGCTCGAAAGAAATACGAAGTATGTTCGTAATAACCGAGGCTCAGAT
TTTAGACAAACTCAAGAAATTGAGCTTAGCGGCCGGCGCGCATTATGTCC
TATGTAGAAGTCTGTGGTCAGCGGTGACAAAAATTTTGTGTTTCGCCAAG
GTCTCGCTCAAAATTGGTCGGCACTGCTGTGTCCGGAGCTCCACTGGCTA
CAGAAATGGGTCGGTACAGTATTGCTGTGTCTGCGGAGTCTCCACTGGCT
GCTCTGTTGCGATCAGTGCTGTCCTTAGCTGTTCAGACGCTCCCAGTGCA
CGCCAGGTGAAACGGAACCACTCGCCTCCTAGAACACATCCCCCACGCGC
CACTTGAAAAGGAGGCGACGGACGGTGTTCGCTGCTTTGATGCTACATGA
TACGCCGAGCGCAAGTGTTGCGGCTGCACACCTCGAAGGGCAAACGGCCA
CAACAGCCGAACGAGTCAATCGAAACAACTTCGTAAGGGATGAAGCTTTT
TTCTTACCACAATTTTACCCTTAGCCATCCAGAATAGTTTCGAAACCCTC
GTTTCTGGAAGCCATTCAGGTGGCTGTGAGTTTTTCGAGTCCTCGTCATA
CCATCACCAAAATCAACCATGGAAAACCCCTGAAAAAGTGCGAAATCGTC
GAGCTACAGTAATGGTGACCCCGCGAAGAATCTGGTAGTTTTTTGAAATA
CAGCAAGCATGTAAACCGCACAGTTCAGCCAGCGTTCTTGCCACCGATGG
CAGTTTTCTCGCGGAACTGCAGGGAGTGATGGCTTGTGTCGGCTGCCCGC
ACCTCGTGTGACAAACTGTTGTGCCGTATGCCATTGCAGGCCTCTCTAGA
CAGGCCACATCATGACGGGCGTCCACAACATACGACGTGTCGTGCCCTAT
GTTTCCCCTTGTCCTTCACTCGTCGGCAACACCGACCAGTGTGTTCTTCG
ATATCGCGTGCAACATTTCTGTTAAAGTTGGTGCCGCGAAAATACCACGT
TCTTGGCATCATGCGGTGGGCAGCTATCGTGGTGCCTGGCGTTGCGAAAG
GTGCTCCGGTGATAACGTTACCTGTGTAACGTAACGGTGCGGCGAATGAG
ACTTTTTTTTTCTTCGAAATTTGCACCCTCCATACATCTGAACGGATTAG
CTCTCAGTTTATTTCGCGGTTTTTGTTGCCTGCGTCCAAAATGTGTTGAG
GCGCAGCATCGAAAGTCTCGGCTGTCTCTCTCACGAGCGCAGATCATCCA
ACCCGAGAGATGCACCCAGAGACGGTGCGATGCTTGTTAAGTTCTCAAGC
TGGGTTGTGCGTGCCCCCGGTTCCGTTCGTCGTTTTTTGTGCAGGTGTCA
GACGCAGAGGTAGCTCAGTGCCGGGATCGATTAGAGGCCGTAAAGAAGGC
AATGCCTGTATGTACGATAGCGGGGGGCACCAAGAAGCGCGGTCGAAAGC
CAGCGGGCAATGGGGCGGCAGGAGCAACAGGATCCCAGAACGGCAAGAGG
CCTAAGGGGGGCACCGTGGGTTCGAGCGCAACATGACACCATGGGCACCT
GGATAATTAGTATGTACAACTGGGTGGTGGTAAAATGAGAAAGATGGCAA
GAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1898:5483..8435-

>mRNA_Ecto-sp13_S_contig1898.6015.1 ID=mRNA_Ecto-sp13_S_contig1898.6015.1|Name=mRNA_Ecto-sp13_S_contig1898.6015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1898:5483..8435- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCTTGCTGGATTCGGCAGATTCCTTCTTCGTCGAGTTGGAGCAGAT
GTTTGCGCTGTGCAAACAGCGAGGAGCAGGAACAGTCTACACCACACTGA
AGAAAGTAGAGGCTGGGAACAAGCAGCAGCTCAAGAAGGGAAATACGAAG
ACAGGGGGAGGACGAAAGGCGGCGGGTCCCGGAGGAAGGAGAGAAGGATG
GCTTGCTCGCGCCAAAATATCGAACCAAAAAGCCCGCAAGATATCCGTAC
TGGCCTCTCTAGACAGGCCACATCATGACGGGCGTCCACAACATACGACG
TGTCGTGCCCTATGTTTCCCCTTGTCCTTCACTCGTCGGCAACACCGACC
AGTGTGTGTCAGACGCAGAGGTAGCTCAGTGCCGGGATCGATTAGAGGCC
GTAAAGAAGGCAATGCCTGTATGTACGATAGCGGGGGGCACCAAGAAGCG
CGGTCGAAAGCCAGCGGGCAATGGGGCGGCAGGAGCAACAGGATCCCAGA
ACGGCAAGAGGCCTAA
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