prot_Ecto-sp13_S_contig1898.6015.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1898.6015.1
Unique Name	prot_Ecto-sp13_S_contig1898.6015.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	172

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1898.6015.1 vs. uniprot
Match: D8LF67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF67_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 4.820e-97
Identity = 152/174 (87.36%), Postives = 159/174 (91.38%), Query Frame = 0

Query:    1 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNTKTGGGRKAAGPGGRREGWLARAKISNQKARKISVLASLDRPHHDGRPQHT---TCRALCFPLSFTRRQHRPVCVRRRGSSVPGSIRGRKEGNACMYDSGGHQEARSKASGQWGGRSNRIPERQEA 171
            MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNT+TG GRKAAGPGGRREGWLARAKISNQKARKISVLASLD P  DGRPQ T   +C  LCFP+ FTRRQHRP  VRRRGSSVPGSIRGRKEGNACMYDSG HQEAR++ASG+WGGR NR+PERQEA
Sbjct:    1 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNTETGAGRKAAGPGGRREGWLARAKISNQKARKISVLASLDTPPDDGRPQQTYDVSC-PLCFPVFFTRRQHRPS-VRRRGSSVPGSIRGRKEGNACMYDSGRHQEARAEASGKWGGRGNRVPERQEA 172

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BLAST of mRNA_Ecto-sp13_S_contig1898.6015.1 vs. uniprot
Match: A0A6H5L6K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K8_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 6.530e-45
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 0

Query:    1 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNTKTGGGRKAAGPGGRREGWLARAKISNQKARKISVLAS 86
            MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKK + +TGGGRK+AGPGGRREGWLARAKISNQKARKISVL S
Sbjct:    1 MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKASKETGGGRKSAGPGGRREGWLARAKISNQKARKISVLVS 86

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1898.6015.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1898.6015.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LF67_ECTSI	4.820e-97	87.36	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L6K8_9PHAE	6.530e-45	93.02	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	GENE3D	3.30.720.10		coord: 1..89 e-value: 5.8E-8 score: 34.3
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	SUPERFAMILY	54762	Signal recognition particle alu RNA binding heterodimer, SRP9/14	coord: 6..54
IPR003210	Signal recognition particle, SRP14 subunit	PFAM	PF02290	SRP14	coord: 7..82 e-value: 8.2E-5 score: 22.9

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1898	contig	Ecto-sp13_S_contig1898:5581..8375 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1898.6015.1	mRNA_Ecto-sp13_S_contig1898.6015.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1898 5483..8435 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1898.6015.1 ID=prot_Ecto-sp13_S_contig1898.6015.1|Name=mRNA_Ecto-sp13_S_contig1898.6015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKGNTK
TGGGRKAAGPGGRREGWLARAKISNQKARKISVLASLDRPHHDGRPQHTT
CRALCFPLSFTRRQHRPVCVRRRGSSVPGSIRGRKEGNACMYDSGGHQEA
RSKASGQWGGRSNRIPERQEA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009018	Signal_recog_particle_SRP9/14
IPR003210	Signal_recog_particle_SRP14