mRNA_Ecto-sp13_S_contig18965.6009.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18965.6009.1
Unique NamemRNA_Ecto-sp13_S_contig18965.6009.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18965.6009.1 vs. uniprot
Match: A0A6H5JCG3_9PHAE (Ribosomal_L18_c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCG3_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 3.340e-70
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 
Query:    1 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 333
            FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL
Sbjct:    9 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 119
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BLAST of mRNA_Ecto-sp13_S_contig18965.6009.1 vs. uniprot
Match: A0A836CBG0_9STRA (RL5, ribosomal protein 5 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBG0_9STRA)

HSP 1 Score: 180 bits (457), Expect = 3.310e-54
Identity = 89/111 (80.18%), Postives = 99/111 (89.19%), Query Frame = 1 
Query:    1 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 333
            FVKV K KAYFKRYQVK+RRRREGKTDYRARKRLICQDKNKYN+PKYRLVVRF+N++V  QI YAT++GD  +CQA+S EL RYG K GLKNYAAAYCTGLL ARRLL+QL
Sbjct:    3 FVKVLKNKAYFKRYQVKYRRRREGKTDYRARKRLICQDKNKYNAPKYRLVVRFSNRYVNCQIAYATVEGDKILCQANSRELERYGLKTGLKNYAAAYCTGLLCARRLLKQL 113
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BLAST of mRNA_Ecto-sp13_S_contig18965.6009.1 vs. uniprot
Match: K8YST5_NANGC (60s ribosomal protein l5 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YST5_NANGC)

HSP 1 Score: 172 bits (437), Expect = 6.110e-53
Identity = 85/111 (76.58%), Postives = 96/111 (86.49%), Query Frame = 1 
Query:    1 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 333
            FVKV K K YFKRYQ KFRRRREGKTDYRARKR++ QDKNKYN+PKYRLVVRFTN++ +AQI+YATI GD  +  A+S EL RYG KVGLKNYAAAYCTGLL+ARRLL +L
Sbjct:    9 FVKVLKNKQYFKRYQTKFRRRREGKTDYRARKRMVAQDKNKYNTPKYRLVVRFTNRYCIAQIVYATIDGDKVLAAANSKELARYGLKVGLKNYAAAYCTGLLIARRLLNKL 119
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BLAST of mRNA_Ecto-sp13_S_contig18965.6009.1 vs. uniprot
Match: A0A7S2C5V7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C5V7_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.660e-52
Identity = 88/111 (79.28%), Postives = 98/111 (88.29%), Query Frame = 1 
Query:    1 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 333
            FVKV K KAYFKRYQVKFRRRREGKTDYRARKRL+CQD+NKYN+PKYRLVVRF+NK  + QI+Y+ I GD  MC ASSTEL RYG KVGLKNYAAAYCTGLL ARRLL+++
Sbjct:    3 FVKVVKNKAYFKRYQVKFRRRREGKTDYRARKRLVCQDRNKYNTPKYRLVVRFSNKACICQIVYSEIVGDKVMCCASSTELGRYGLKVGLKNYAAAYCTGLLCARRLLKKI 113
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BLAST of mRNA_Ecto-sp13_S_contig18965.6009.1 vs. uniprot
Match: D0NSE8_PHYIT (60S ribosomal protein L5 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NSE8_PHYIT)

HSP 1 Score: 171 bits (434), Expect = 2.610e-52
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:    1 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 333
            FVKV K KAYFKRYQVK+RRRREGKTDYRARKRLI QDKNKYNSPKYRLVVR TNK V+ QI YA I GD  +CQA+S ELPRYG  VGLKNYAAAY TGLLV RR+L++L
Sbjct:   15 FVKVLKNKAYFKRYQVKYRRRREGKTDYRARKRLITQDKNKYNSPKYRLVVRITNKQVICQIAYAEIDGDKILCQATSAELPRYGLTVGLKNYAAAYATGLLVGRRVLQKL 125
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BLAST of mRNA_Ecto-sp13_S_contig18965.6009.1 vs. uniprot
Match: B7TJH5_ARTSF (Ribosomal protein L5 (Fragment) n=1 Tax=Artemia franciscana TaxID=6661 RepID=B7TJH5_ARTSF)

HSP 1 Score: 167 bits (422), Expect = 1.330e-51
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 1 
Query:    1 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLL 324
            FVKV K KAYFKR+QVKFRRRREGKTDY AR+RL+ QDKNKYN+PKYR+VVRFTNK ++ QI YA I+GDV +C A + ELPRYG KVGL NYAAAYCTGLL+ARRLL
Sbjct:    3 FVKVVKNKAYFKRFQVKFRRRREGKTDYYARRRLVIQDKNKYNTPKYRMVVRFTNKDIVCQIAYARIEGDVIVCAAYAHELPRYGIKVGLTNYAAAYCTGLLLARRLL 110
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BLAST of mRNA_Ecto-sp13_S_contig18965.6009.1 vs. uniprot
Match: A0A7S0BVS7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVS7_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.600e-51
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:    1 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQ 330
            FVKVQK+KAYF R+QVKFRRRREGKTDYR RKRL CQDKNKY SPKYRLVVRFTN+ V+ QI YA I GD  +CQASSTEL RYG  VGLKNYAAAYCTGLL ARRLL++
Sbjct:   21 FVKVQKSKAYFSRFQVKFRRRREGKTDYRQRKRLCCQDKNKYQSPKYRLVVRFTNRQVICQIAYALIDGDRILCQASSTELGRYGLSVGLKNYAAAYCTGLLCARRLLQK 130
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BLAST of mRNA_Ecto-sp13_S_contig18965.6009.1 vs. uniprot
Match: A9NKC3_PICSI (Ribosomal_L18_c domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NKC3_PICSI)

HSP 1 Score: 172 bits (436), Expect = 2.750e-51
Identity = 88/111 (79.28%), Postives = 99/111 (89.19%), Query Frame = 1 
Query:    1 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 333
            FVK QKT+AYFKR+QVKF+RRREGKTDYRAR RLI QDKNKYN+PKYRLVVRF+NK V+AQIIYAT+ GDV M  A S ELPRYG +VGL NYAAAYCTGLL+ARR+L+QL
Sbjct:    3 FVKAQKTRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRLVVRFSNKDVVAQIIYATLAGDVVMAAAYSRELPRYGLEVGLTNYAAAYCTGLLLARRVLKQL 113
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BLAST of mRNA_Ecto-sp13_S_contig18965.6009.1 vs. uniprot
Match: A0A4D9DC45_9STRA (Ribosomal_L18_c domain-containing protein n=4 Tax=cellular organisms TaxID=131567 RepID=A0A4D9DC45_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.220e-51
Identity = 85/111 (76.58%), Postives = 96/111 (86.49%), Query Frame = 1 
Query:    1 FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 333
            FVKV K K YFKRYQ KFRRRREGKTDYRARKR++ QDKNKYN+PKYRLVVRFTN++ +AQI+YATI GD  +  A+S EL RYG KVGLKNYAAAYCTGLL+ARRLL +L
Sbjct:    3 FVKVLKNKQYFKRYQTKFRRRREGKTDYRARKRMVAQDKNKYNTPKYRLVVRFTNRYCIAQIVYATIDGDKVLAAANSKELARYGLKVGLKNYAAAYCTGLLIARRLLNKL 113
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BLAST of mRNA_Ecto-sp13_S_contig18965.6009.1 vs. uniprot
Match: A0A183ATC4_9TREM (Ribosomal_L18_c domain-containing protein n=3 Tax=Echinostomatoidea TaxID=404429 RepID=A0A183ATC4_9TREM)

HSP 1 Score: 172 bits (435), Expect = 4.100e-51
Identity = 89/110 (80.91%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:    4 VKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLVVRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTGLLVARRLLRQL 333
            VK+ K K+YFKRYQVKFRRRREGKTDY ARKRLI QDKNKYN+PKYRLVVRFTNK ++ QIIYA I GD  MC A + ELPRYG KVGL NYAAAYCTGLLVARRLLRQL
Sbjct:    4 VKLVKNKSYFKRYQVKFRRRREGKTDYFARKRLIWQDKNKYNTPKYRLVVRFTNKDIICQIIYARINGDRVMCTAYAHELPRYGVKVGLTNYAAAYCTGLLVARRLLRQL 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18965.6009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG3_9PHAE3.340e-70100.00Ribosomal_L18_c domain-containing protein n=2 Tax=... [more]
A0A836CBG0_9STRA3.310e-5480.18RL5, ribosomal protein 5 60S large ribosomal subun... [more]
K8YST5_NANGC6.110e-5376.5860s ribosomal protein l5 n=1 Tax=Nannochloropsis g... [more]
A0A7S2C5V7_9STRA1.660e-5279.28Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D0NSE8_PHYIT2.610e-5279.2860S ribosomal protein L5 n=1 Tax=Phytophthora infe... [more]
B7TJH5_ARTSF1.330e-5176.85Ribosomal protein L5 (Fragment) n=1 Tax=Artemia fr... [more]
A0A7S0BVS7_9STRA1.600e-5180.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A9NKC3_PICSI2.750e-5179.28Ribosomal_L18_c domain-containing protein n=1 Tax=... [more]
A0A4D9DC45_9STRA3.220e-5176.58Ribosomal_L18_c domain-containing protein n=4 Tax=... [more]
A0A183ATC4_9TREM4.100e-5180.91Ribosomal_L18_c domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18965contigEcto-sp13_S_contig18965:640..972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score222.2
Seed ortholog evalue1.2e-55
Seed eggNOG ortholog2880.D8LR22
Preferred nameRPL5
Model size333
KEGG koko:K02932
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categorymitochondrion
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009987,GO:0010035,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010921,GO:0010922,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017101,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0023051,GO:0030162,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035303,GO:0035306,GO:0042176,GO:0042177,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043043,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045727,GO:0045861,GO:0045937,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051336,GO:0051338,GO:0051340,GO:0051345,GO:0051348,GO:0051351,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051716,GO:0055105,GO:0055106,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071241,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1902531,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903630,GO:1903632,GO:1904666,GO:1904667,GO:1905015,GO:1905017,GO:1905018,GO:1905020,GO:1905021,GO:1905023,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435
Exons1
EggNOG free text desc.5S rRNA binding
EggNOG OGsCOG0256@1,KOG0875@2759
Cds size333
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01009,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462968.0076652-CDS-Ecto-sp13_S_contig18965:639..9721681462968.0076652-CDS-Ecto-sp13_S_contig18965:639..972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18965 640..972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18965.6009.1prot_Ecto-sp13_S_contig18965.6009.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18965 640..972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18965.6009.1

>prot_Ecto-sp13_S_contig18965.6009.1 ID=prot_Ecto-sp13_S_contig18965.6009.1|Name=mRNA_Ecto-sp13_S_contig18965.6009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
FVKVQKTKAYFKRYQVKFRRRREGKTDYRARKRLICQDKNKYNSPKYRLV
VRFTNKFVLAQIIYATIQGDVCMCQASSTELPRYGCKVGLKNYAAAYCTG
LLVARRLLRQL
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mRNA from alignment at Ecto-sp13_S_contig18965:640..972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18965.6009.1 ID=mRNA_Ecto-sp13_S_contig18965.6009.1|Name=mRNA_Ecto-sp13_S_contig18965.6009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18965:640..972+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTCAAGGTCCAAAAGACGAAGGCGTACTTCAAGCGCTACCAGGTGAA
GTTCCGCCGCAGGCGCGAGGGCAAGACCGACTACCGGGCCCGCAAGAGGC
TCATCTGCCAGGACAAGAACAAGTACAACTCGCCCAAGTACAGGCTCGTC
GTGCGCTTCACCAACAAGTTCGTGCTGGCGCAGATCATCTACGCCACCAT
CCAGGGGGACGTGTGCATGTGCCAGGCCTCCTCCACCGAGCTCCCCCGGT
ACGGCTGCAAGGTCGGGCTCAAGAACTACGCCGCGGCGTACTGCACCGGG
CTCCTGGTTGCCCGCCGCCTGCTCCGTCAGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18965:640..972+

>mRNA_Ecto-sp13_S_contig18965.6009.1 ID=mRNA_Ecto-sp13_S_contig18965.6009.1|Name=mRNA_Ecto-sp13_S_contig18965.6009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18965:640..972+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTCAAGGTCCAAAAGACGAAGGCGTACTTCAAGCGCTACCAGGTGAA
GTTCCGCCGCAGGCGCGAGGGCAAGACCGACTACCGGGCCCGCAAGAGGC
TCATCTGCCAGGACAAGAACAAGTACAACTCGCCCAAGTACAGGCTCGTC
GTGCGCTTCACCAACAAGTTCGTGCTGGCGCAGATCATCTACGCCACCAT
CCAGGGGGACGTGTGCATGTGCCAGGCCTCCTCCACCGAGCTCCCCCGGT
ACGGCTGCAAGGTCGGGCTCAAGAACTACGCCGCGGCGTACTGCACCGGG
CTCCTGGTTGCCCGCCGCCTGCTCCGTCAGCTG
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