mRNA_Ecto-sp13_S_contig18960.6006.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18960.6006.1
Unique NamemRNA_Ecto-sp13_S_contig18960.6006.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18960.6006.1 vs. uniprot
Match: A0A6H5L6U3_9PHAE (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6U3_9PHAE)

HSP 1 Score: 728 bits (1878), Expect = 6.410e-261
Identity = 412/488 (84.43%), Postives = 420/488 (86.07%), Query Frame = 1 
Query:    1 MFHCCCSTNRVYLVQ-LWKQVVLLLFLMLLMLAREDDVSGVMGVEMIEVKGGCLQVTLKAGEHIKADPRCIVSRGVGLALRPPTPLEKQGILGGLKRRLRKVALGGQDKQXXXXXXXXRDNHRLERVSNTMASNETDCFLAPPFPGDVFVVSVSSGGGDESVGEDRRDYDDAHRGDRRKARQRQEGRGGDRPAARGSRRGSDKPRKLVLLTQAIVAVGPGVVVKPSPLSDSAGXXXXXXXXXXXXXXXXXXPVVTTGALSLCEGQGPIAVGGYGRLKKLRLRPGQRRLVDSSRAVGWTSGVTCLTGTGGRASVPTTDNNIGANSPAGALTTFVGPGTIYVQTHSLPGLRRLLLPKSGVSLQGGVPSGLLGGGXXXAGALFAPRGGSPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREGGXXXXXPPQKSAPER 1461
            MFHCCCSTNRV LVQ   KQVVLL      MLARED  +GVMGVEMIEVKGGCLQVTLKAGEHIKADPR IVSRGVGLALRPP PLEKQGILGGLKRRLRK A G QD  XXXXXX  RDNHRLERVSNTMASNETDCF+APPFPGDV VVSVSSGGGDESVGED +DYDDAH GDRRKARQR+EGR GDRPAARGSR GS KPRKLVLLTQAIVAVGPGVVVKPSP  D+AG                  PVVTTGALSLCEGQGPIAV GYG+LKKLRLRPGQ+RLVDSSRAVGWTSGVTCLTGTGGRASVPTT NNIGANSPAGA TTFVGPGT+YVQTHSLPGLRRLLLPKSGV LQG VPSGLL  G   AGALFAPRGG PTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREG      PPQ    ER
Sbjct:    9 MFHCCCSTNRVSLVQRCGKQVVLLXXXXXXMLAREDADAGVMGVEMIEVKGGCLQVTLKAGEHIKADPRYIVSRGVGLALRPPAPLEKQGILGGLKRRLRKAAQGRQDHXXXXXXX--RDNHRLERVSNTMASNETDCFVAPPFPGDVVVVSVSSGGGDESVGEDGKDYDDAHGGDRRKARQRREGRSGDRPAARGSRHGSVKPRKLVLLTQAIVAVGPGVVVKPSPRPDAAGVGGLGGSSLSRRQQQRGGPVVTTGALSLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGVTCLTGTGGRASVPTTGNNIGANSPAGAFTTFVGPGTVYVQTHSLPGLRRLLLPKSGVPLQGEVPSGLLEAGRRGAGALFAPRGGPPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREGEGGGGTPPQIRPAER 494
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18960.6006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6U3_9PHAE6.410e-26184.43Altered inheritance of mitochondria protein 24, mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18960contigEcto-sp13_S_contig18960:44..2188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1464
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionMitochondrial biogenesis protein AIM24
Ec32 orthologEc-10_006230.1
Cds size1464
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462967.8932097-CDS-Ecto-sp13_S_contig18960:43..13331681462967.8932097-CDS-Ecto-sp13_S_contig18960:43..1333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18960 44..1333 -
1681462967.9032292-CDS-Ecto-sp13_S_contig18960:2014..21881681462967.9032292-CDS-Ecto-sp13_S_contig18960:2014..2188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18960 2015..2188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18960.6006.1prot_Ecto-sp13_S_contig18960.6006.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18960 44..2188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18960.6006.1

>prot_Ecto-sp13_S_contig18960.6006.1 ID=prot_Ecto-sp13_S_contig18960.6006.1|Name=mRNA_Ecto-sp13_S_contig18960.6006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=488bp
MFHCCCSTNRVYLVQLWKQVVLLLFLMLLMLAREDDVSGVMGVEMIEVKG
GCLQVTLKAGEHIKADPRCIVSRGVGLALRPPTPLEKQGILGGLKRRLRK
VALGGQDKQQQQQKQQQRDNHRLERVSNTMASNETDCFLAPPFPGDVFVV
SVSSGGGDESVGEDRRDYDDAHRGDRRKARQRQEGRGGDRPAARGSRRGS
DKPRKLVLLTQAIVAVGPGVVVKPSPLSDSAGGGGGGGSSLSRRQQQRGG
PVVTTGALSLCEGQGPIAVGGYGRLKKLRLRPGQRRLVDSSRAVGWTSGV
TCLTGTGGRASVPTTDNNIGANSPAGALTTFVGPGTIYVQTHSLPGLRRL
LLPKSGVSLQGGVPSGLLGGGGGGAGALFAPRGGSPTVGLSLKRGLAKRA
KAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLA
KVARRVAVVLVRLGREELWREGGGGGGTPPQKSAPER*
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mRNA from alignment at Ecto-sp13_S_contig18960:44..2188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18960.6006.1 ID=mRNA_Ecto-sp13_S_contig18960.6006.1|Name=mRNA_Ecto-sp13_S_contig18960.6006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2145bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18960:44..2188- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCACTGCTGTTGTAGCACCAACCGAGTGTACTTGGTACAACTATG
GAAGCAAGTAGTGCTTCTCCTGTTTCTGATGTTGCTGATGCTGGCGAGAG
AAGATGATGTCTCGGGTGTCATGGGCGTGGAGATGATCGAAGTGAAGGGT
GGCTGCCTACAGGTTACATTGAAGGTGCGTCCTCTCCTTTCTTTTTCTGC
GCGCTTTCATGCATACGCGGTACGAGAAACTATACGACACGAGCAGTTTC
TCTGCCCCGACCTCTTGTTGAACTGCTACCCTCCGCCTGGGTGCTGCACG
TACATGCGAGTGAGTAAACATGTGCACACCGAGAGCCTCAGTGTGCACGC
ACACAAAATGGACAACTGCCGTACTCCGGGCGCACTGGCTTCCCCTCCGC
CCGTGCACCAACGCTGAGGAGGTACCATGGCGTCTCGTGCCATGCCTACA
TACAGCAGGACAGAGGCGCCTACTCCCGAATGGCCCGGCTACAGTGCTCA
TGACGTGATTGCGCCACACCACCACACCTCCATGCTGTTTCACCTTTCGT
CCTCAGCTGCTGACAGGCAATCAGTGTTTCACAGAGTTGATGGACGCGTT
GCTCGAGTCTTGAATGCCTCCCGTCCGAGTCAATTCGCCCCGAATGCTTC
AACGGCGGGCACTCAGAAGCACTGTCGAATCAACTTATGGAACCAACTAT
TGTAGGGCATCACCACAACACAACAATCACAACAAAACAACACAAAGCAC
AACGTTCAATGAAACGACCGGCGTTCGATCTCCGCGCTACCGCCGCTACC
GATACCGATACTGACGCCATTGCTGCTGCTGCTGCTGCCGCCGCTACCTC
GGCAGGCCGGCGAACACATCAAAGCGGACCCCCGTTGCATCGTGTCCCGA
GGCGTCGGTCTAGCCCTCCGGCCGCCGACGCCCCTGGAAAAGCAAGGAAT
TCTCGGCGGGCTTAAGCGGCGCTTGCGCAAGGTGGCCCTAGGAGGACAGG
ACAAGCAGCAGCAGCAGCAGAAGCAGCAGCAGCGAGATAATCACCGTTTG
GAGAGGGTATCGAACACGATGGCCTCGAACGAAACCGACTGTTTTCTCGC
CCCGCCGTTTCCGGGAGACGTTTTCGTTGTCTCGGTCAGCAGCGGTGGCG
GAGACGAAAGCGTCGGTGAAGATAGGCGGGATTATGACGATGCCCACCGC
GGCGATCGGCGCAAGGCTAGGCAACGGCAAGAGGGTAGGGGCGGGGACCG
GCCTGCCGCGAGAGGCAGCAGGCGCGGCTCCGACAAGCCCCGCAAGCTCG
TGCTGCTAACGCAGGCGATTGTTGCCGTCGGCCCGGGGGTTGTCGTGAAG
CCGTCGCCCCTCTCGGATTCAGCAGGAGGAGGAGGGGGAGGGGGGTCCTC
ACTCTCCCGCCGACAGCAGCAGCGTGGCGGACCTGTTGTAACGACGGGCG
CTCTCTCTTTATGTGAAGGGCAAGGACCAATCGCGGTGGGCGGGTACGGA
AGGCTAAAAAAGTTGCGGTTGAGGCCGGGGCAGAGGAGGTTGGTGGACTC
CTCTCGCGCGGTGGGTTGGACCAGCGGCGTAACGTGCCTCACTGGCACCG
GTGGGCGTGCCTCGGTACCCACCACCGACAACAATATTGGAGCCAACAGC
CCTGCTGGCGCGTTAACCACGTTCGTAGGCCCCGGGACTATTTACGTACA
GACGCACTCTCTCCCTGGTTTACGGCGGTTACTCTTGCCAAAGTCAGGAG
TGTCGTTGCAAGGGGGAGTTCCTTCGGGCCTCCTGGGGGGGGGGGGGGGG
GGTGCGGGGGCGTTGTTCGCCCCACGGGGAGGGTCGCCAACAGTGGGCCT
TTCTCTCAAGAGGGGCTTGGCGAAGCGCGCGAAGGCGGGGGCGAAGCGGG
TTTCTCTGGCAGTGGCGTTCTTCGCGCTGTACCTGGTGGTGTACTCCCTG
GTGACGGCGTTGCTCCTTGAGGGGAGGGACGGCCTTGCCAACGCGCCACG
GCACGCGGTGCAGGTGGTTCGCTCCCTCGCGAAGGTGGCGCGGCGTGTGG
CGGTGGTGCTGGTACGGCTTGGGCGGGAAGAGCTGTGGAGAGAGGGAGGA
GGGGGAGGTGGTACACCTCCGCAGAAAAGCGCTCCAGAACGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18960:44..2188-

>mRNA_Ecto-sp13_S_contig18960.6006.1 ID=mRNA_Ecto-sp13_S_contig18960.6006.1|Name=mRNA_Ecto-sp13_S_contig18960.6006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18960:44..2188- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCACTGCTGTTGTAGCACCAACCGAGTGTACTTGGTACAACTATG
GAAGCAAGTAGTGCTTCTCCTGTTTCTGATGTTGCTGATGCTGGCGAGAG
AAGATGATGTCTCGGGTGTCATGGGCGTGGAGATGATCGAAGTGAAGGGT
GGCTGCCTACAGGTTACATTGAAGGCCGGCGAACACATCAAAGCGGACCC
CCGTTGCATCGTGTCCCGAGGCGTCGGTCTAGCCCTCCGGCCGCCGACGC
CCCTGGAAAAGCAAGGAATTCTCGGCGGGCTTAAGCGGCGCTTGCGCAAG
GTGGCCCTAGGAGGACAGGACAAGCAGCAGCAGCAGCAGAAGCAGCAGCA
GCGAGATAATCACCGTTTGGAGAGGGTATCGAACACGATGGCCTCGAACG
AAACCGACTGTTTTCTCGCCCCGCCGTTTCCGGGAGACGTTTTCGTTGTC
TCGGTCAGCAGCGGTGGCGGAGACGAAAGCGTCGGTGAAGATAGGCGGGA
TTATGACGATGCCCACCGCGGCGATCGGCGCAAGGCTAGGCAACGGCAAG
AGGGTAGGGGCGGGGACCGGCCTGCCGCGAGAGGCAGCAGGCGCGGCTCC
GACAAGCCCCGCAAGCTCGTGCTGCTAACGCAGGCGATTGTTGCCGTCGG
CCCGGGGGTTGTCGTGAAGCCGTCGCCCCTCTCGGATTCAGCAGGAGGAG
GAGGGGGAGGGGGGTCCTCACTCTCCCGCCGACAGCAGCAGCGTGGCGGA
CCTGTTGTAACGACGGGCGCTCTCTCTTTATGTGAAGGGCAAGGACCAAT
CGCGGTGGGCGGGTACGGAAGGCTAAAAAAGTTGCGGTTGAGGCCGGGGC
AGAGGAGGTTGGTGGACTCCTCTCGCGCGGTGGGTTGGACCAGCGGCGTA
ACGTGCCTCACTGGCACCGGTGGGCGTGCCTCGGTACCCACCACCGACAA
CAATATTGGAGCCAACAGCCCTGCTGGCGCGTTAACCACGTTCGTAGGCC
CCGGGACTATTTACGTACAGACGCACTCTCTCCCTGGTTTACGGCGGTTA
CTCTTGCCAAAGTCAGGAGTGTCGTTGCAAGGGGGAGTTCCTTCGGGCCT
CCTGGGGGGGGGGGGGGGGGGTGCGGGGGCGTTGTTCGCCCCACGGGGAG
GGTCGCCAACAGTGGGCCTTTCTCTCAAGAGGGGCTTGGCGAAGCGCGCG
AAGGCGGGGGCGAAGCGGGTTTCTCTGGCAGTGGCGTTCTTCGCGCTGTA
CCTGGTGGTGTACTCCCTGGTGACGGCGTTGCTCCTTGAGGGGAGGGACG
GCCTTGCCAACGCGCCACGGCACGCGGTGCAGGTGGTTCGCTCCCTCGCG
AAGGTGGCGCGGCGTGTGGCGGTGGTGCTGGTACGGCTTGGGCGGGAAGA
GCTGTGGAGAGAGGGAGGAGGGGGAGGTGGTACACCTCCGCAGAAAAGCG
CTCCAGAACGATAG
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