prot_Ecto-sp13_S_contig18960.6006.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18960.6006.1
Unique Nameprot_Ecto-sp13_S_contig18960.6006.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length488
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18960.6006.1 vs. uniprot
Match: A0A6H5L6U3_9PHAE (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6U3_9PHAE)

HSP 1 Score: 728 bits (1878), Expect = 6.410e-261
Identity = 412/488 (84.43%), Postives = 420/488 (86.07%), Query Frame = 0 
Query:    1 MFHCCCSTNRVYLVQ-LWKQVVLLLFLMLLMLAREDDVSGVMGVEMIEVKGGCLQVTLKAGEHIKADPRCIVSRGVGLALRPPTPLEKQGILGGLKRRLRKVALGGQDKQXXXXXXXXRDNHRLERVSNTMASNETDCFLAPPFPGDVFVVSVSSGGGDESVGEDRRDYDDAHRGDRRKARQRQEGRGGDRPAARGSRRGSDKPRKLVLLTQAIVAVGPGVVVKPSPLSDSAGXXXXXXXXXXXXXXXXXXPVVTTGALSLCEGQGPIAVGGYGRLKKLRLRPGQRRLVDSSRAVGWTSGVTCLTGTGGRASVPTTDNNIGANSPAGALTTFVGPGTIYVQTHSLPGLRRLLLPKSGVSLQGGVPSGLLGGGXXXAGALFAPRGGSPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREGGXXXXXPPQKSAPER 487
            MFHCCCSTNRV LVQ   KQVVLL      MLARED  +GVMGVEMIEVKGGCLQVTLKAGEHIKADPR IVSRGVGLALRPP PLEKQGILGGLKRRLRK A G QD  XXXXXX  RDNHRLERVSNTMASNETDCF+APPFPGDV VVSVSSGGGDESVGED +DYDDAH GDRRKARQR+EGR GDRPAARGSR GS KPRKLVLLTQAIVAVGPGVVVKPSP  D+AG                  PVVTTGALSLCEGQGPIAV GYG+LKKLRLRPGQ+RLVDSSRAVGWTSGVTCLTGTGGRASVPTT NNIGANSPAGA TTFVGPGT+YVQTHSLPGLRRLLLPKSGV LQG VPSGLL  G   AGALFAPRGG PTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREG      PPQ    ER
Sbjct:    9 MFHCCCSTNRVSLVQRCGKQVVLLXXXXXXMLAREDADAGVMGVEMIEVKGGCLQVTLKAGEHIKADPRYIVSRGVGLALRPPAPLEKQGILGGLKRRLRKAAQGRQDHXXXXXXX--RDNHRLERVSNTMASNETDCFVAPPFPGDVVVVSVSSGGGDESVGEDGKDYDDAHGGDRRKARQRREGRSGDRPAARGSRHGSVKPRKLVLLTQAIVAVGPGVVVKPSPRPDAAGVGGLGGSSLSRRQQQRGGPVVTTGALSLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGVTCLTGTGGRASVPTTGNNIGANSPAGAFTTFVGPGTVYVQTHSLPGLRRLLLPKSGVPLQGEVPSGLLEAGRRGAGALFAPRGGPPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREGEGGGGTPPQIRPAER 494
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18960.6006.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6U3_9PHAE6.410e-26184.43Altered inheritance of mitochondria protein 24, mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036983Mitochondrial biogenesis AIM24 superfamilyGENE3D3.60.160.10coord: 237..356
e-value: 6.3E-9
score: 37.3
IPR002838Mitochondrial biogenesis protein AIM24PFAMPF01987AIM24coord: 258..342
e-value: 2.0E-6
score: 27.8
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 33..406
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 430..487
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 407..429
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..32
score: 0.826
NoneNo IPR availableTMHMMTMhelixcoord: 407..429
NoneNo IPR availableTMHMMTMhelixcoord: 13..32
IPR016031Tryptophan RNA-binding attenuator protein-like domain superfamilySUPERFAMILY51219TRAP-likecoord: 261..354

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18960contigEcto-sp13_S_contig18960:44..2188 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18960.6006.1mRNA_Ecto-sp13_S_contig18960.6006.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18960 44..2188 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18960.6006.1 ID=prot_Ecto-sp13_S_contig18960.6006.1|Name=mRNA_Ecto-sp13_S_contig18960.6006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=488bp
MFHCCCSTNRVYLVQLWKQVVLLLFLMLLMLAREDDVSGVMGVEMIEVKG
GCLQVTLKAGEHIKADPRCIVSRGVGLALRPPTPLEKQGILGGLKRRLRK
VALGGQDKQQQQQKQQQRDNHRLERVSNTMASNETDCFLAPPFPGDVFVV
SVSSGGGDESVGEDRRDYDDAHRGDRRKARQRQEGRGGDRPAARGSRRGS
DKPRKLVLLTQAIVAVGPGVVVKPSPLSDSAGGGGGGGSSLSRRQQQRGG
PVVTTGALSLCEGQGPIAVGGYGRLKKLRLRPGQRRLVDSSRAVGWTSGV
TCLTGTGGRASVPTTDNNIGANSPAGALTTFVGPGTIYVQTHSLPGLRRL
LLPKSGVSLQGGVPSGLLGGGGGGAGALFAPRGGSPTVGLSLKRGLAKRA
KAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLA
KVARRVAVVLVRLGREELWREGGGGGGTPPQKSAPER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036983AIM24_sf
IPR002838AIM24
IPR016031Trp_RNA-bd_attenuator-like_dom