mRNA_Ecto-sp13_S_contig18958.6003.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18958.6003.1
Unique NamemRNA_Ecto-sp13_S_contig18958.6003.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18958.6003.1 vs. uniprot
Match: A0A6H5L398_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L398_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 3.210e-81
Identity = 134/143 (93.71%), Postives = 136/143 (95.10%), Query Frame = 3 
Query:  111 MAAMQFSDAGGKEGNVWGDTSTNSNGGVSSEKNGAGSPTGHGVPAAGAFATCHACTTARVSRSVTCQGCEKTFHWTCMGFYEHKYQRPGPNWRCKDCKTAEAGGEGEAASPAALATQAVQLPESGEAIDVDDSLATPPETARL 539
            MAAM FSDAGGKEGN+WGD S NSNGGV SEKNGAGSPTG+GVPAAGAFATCHACTTARVSRSVTCQGCEKTFHWTCMGFYEHKYQRPGPNWRCKDCKTAEAGG GEAASPAALATQAVQL ESGEAIDVDDSLATPPET RL
Sbjct:    1 MAAMLFSDAGGKEGNMWGDNSANSNGGVCSEKNGAGSPTGNGVPAAGAFATCHACTTARVSRSVTCQGCEKTFHWTCMGFYEHKYQRPGPNWRCKDCKTAEAGG-GEAASPAALATQAVQLRESGEAIDVDDSLATPPETVRL 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18958.6003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L398_9PHAE3.210e-8193.71PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18958contigEcto-sp13_S_contig18958:2194..2732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size540
Hectar predicted targeting categoryother localisation
Exons1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462967.5955234-UTR-Ecto-sp13_S_contig18958:2193..23031681462967.5955234-UTR-Ecto-sp13_S_contig18958:2193..2303Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18958 2194..2303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462967.6043985-CDS-Ecto-sp13_S_contig18958:2303..27321681462967.6043985-CDS-Ecto-sp13_S_contig18958:2303..2732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18958 2304..2732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18958.6003.1prot_Ecto-sp13_S_contig18958.6003.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18958 2304..2732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18958.6003.1

>prot_Ecto-sp13_S_contig18958.6003.1 ID=prot_Ecto-sp13_S_contig18958.6003.1|Name=mRNA_Ecto-sp13_S_contig18958.6003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MAAMQFSDAGGKEGNVWGDTSTNSNGGVSSEKNGAGSPTGHGVPAAGAFA
TCHACTTARVSRSVTCQGCEKTFHWTCMGFYEHKYQRPGPNWRCKDCKTA
EAGGEGEAASPAALATQAVQLPESGEAIDVDDSLATPPETARL
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mRNA from alignment at Ecto-sp13_S_contig18958:2194..2732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18958.6003.1 ID=mRNA_Ecto-sp13_S_contig18958.6003.1|Name=mRNA_Ecto-sp13_S_contig18958.6003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=539bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18958:2194..2732+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGGTGGACGGGTGGGCGGACGCTAAGGCCTACCTCCCTTGAGCGCT
GCCCTGCTGCAGCGCCCGAAGGTCGGTTCCGTTGGCTTTTTCGTGTACCG
CTCCGTGGAGATGGCCGCTATGCAGTTCTCTGATGCCGGCGGGAAGGAAG
GAAACGTGTGGGGAGATACCAGCACCAACTCGAACGGCGGTGTCAGCTCG
GAGAAGAATGGCGCTGGTTCTCCTACAGGCCATGGCGTGCCTGCGGCCGG
AGCATTTGCGACATGCCACGCTTGCACCACGGCCCGAGTTTCCCGTAGTG
TGACGTGCCAGGGTTGCGAAAAAACGTTCCACTGGACGTGCATGGGGTTC
TACGAACACAAGTACCAAAGGCCAGGACCCAACTGGAGATGCAAGGACTG
CAAAACGGCCGAAGCTGGTGGAGAAGGAGAGGCAGCATCTCCAGCAGCGC
TGGCGACTCAGGCAGTGCAATTGCCGGAGTCAGGAGAAGCGATAGATGTG
GATGACTCCTTGGCAACCCCGCCGGAAACCGCGCGTCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18958:2194..2732+

>mRNA_Ecto-sp13_S_contig18958.6003.1 ID=mRNA_Ecto-sp13_S_contig18958.6003.1|Name=mRNA_Ecto-sp13_S_contig18958.6003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18958:2194..2732+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGCTATGCAGTTCTCTGATGCCGGCGGGAAGGAAGGAAACGTGTG
GGGAGATACCAGCACCAACTCGAACGGCGGTGTCAGCTCGGAGAAGAATG
GCGCTGGTTCTCCTACAGGCCATGGCGTGCCTGCGGCCGGAGCATTTGCG
ACATGCCACGCTTGCACCACGGCCCGAGTTTCCCGTAGTGTGACGTGCCA
GGGTTGCGAAAAAACGTTCCACTGGACGTGCATGGGGTTCTACGAACACA
AGTACCAAAGGCCAGGACCCAACTGGAGATGCAAGGACTGCAAAACGGCC
GAAGCTGGTGGAGAAGGAGAGGCAGCATCTCCAGCAGCGCTGGCGACTCA
GGCAGTGCAATTGCCGGAGTCAGGAGAAGCGATAGATGTGGATGACTCCT
TGGCAACCCCGCCGGAAACCGCGCGTCTG
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