prot_Ecto-sp13_S_contig18958.6003.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18958.6003.1
Unique Nameprot_Ecto-sp13_S_contig18958.6003.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length143
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18958.6003.1 vs. uniprot
Match: A0A6H5L398_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L398_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 1.060e-81
Identity = 134/143 (93.71%), Postives = 136/143 (95.10%), Query Frame = 0 
Query:    1 MAAMQFSDAGGKEGNVWGDTSTNSNGGVSSEKNGAGSPTGHGVPAAGAFATCHACTTARVSRSVTCQGCEKTFHWTCMGFYEHKYQRPGPNWRCKDCKTAEAGGEGEAASPAALATQAVQLPESGEAIDVDDSLATPPETARL 143
            MAAM FSDAGGKEGN+WGD S NSNGGV SEKNGAGSPTG+GVPAAGAFATCHACTTARVSRSVTCQGCEKTFHWTCMGFYEHKYQRPGPNWRCKDCKTAEAGG GEAASPAALATQAVQL ESGEAIDVDDSLATPPET RL
Sbjct:    1 MAAMLFSDAGGKEGNMWGDNSANSNGGVCSEKNGAGSPTGNGVPAAGAFATCHACTTARVSRSVTCQGCEKTFHWTCMGFYEHKYQRPGPNWRCKDCKTAEAGG-GEAASPAALATQAVQLRESGEAIDVDDSLATPPETVRL 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18958.6003.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L398_9PHAE1.060e-8193.71PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 51..98
e-value: 2.2E-5
score: 33.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 31..106
e-value: 1.6E-8
score: 36.0
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 52..99
e-value: 1.5E-7
score: 31.2
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 49..100
score: 8.92
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 52..97
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 50..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18958contigEcto-sp13_S_contig18958:2304..2732 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18958.6003.1mRNA_Ecto-sp13_S_contig18958.6003.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18958 2194..2732 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18958.6003.1 ID=prot_Ecto-sp13_S_contig18958.6003.1|Name=mRNA_Ecto-sp13_S_contig18958.6003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MAAMQFSDAGGKEGNVWGDTSTNSNGGVSSEKNGAGSPTGHGVPAAGAFA
TCHACTTARVSRSVTCQGCEKTFHWTCMGFYEHKYQRPGPNWRCKDCKTA
EAGGEGEAASPAALATQAVQLPESGEAIDVDDSLATPPETARL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD