mRNA_Ecto-sp13_S_contig1894.5997.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1894.5997.1
Unique NamemRNA_Ecto-sp13_S_contig1894.5997.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1894.5997.1 vs. uniprot
Match: A0A6H5JWL4_9PHAE (ACB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWL4_9PHAE)

HSP 1 Score: 404 bits (1038), Expect = 5.370e-138
Identity = 268/281 (95.37%), Postives = 273/281 (97.15%), Query Frame = 1
Query:    1 MAAMEPPSVCDEDTERLFGMAANHMITVKGVALSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGVEPVEAMKSYLLKVTELCPDWLAEAQGQPPGDAGTVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMAAGQGNTAEWGANEEIFAAASDGDVVQIRDLVSSGVKVDAQDEEGRTPLHFAADRGQSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAEESVKHLLIRPDCSAA 843
            MAAMEPPSVCDEDTERLFGMAANHMITVKGVALSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRG+EPVEAMKSYLLKVTELCPDWLAEAQGQPPG+AG VTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMA GQGNTAEWGANEEIFAAAS+GDVV+IRDLVSSGVKVDAQDEEGRTPLHFAADR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAEESVKHLLIRP+ SAA
Sbjct:    1 MAAMEPPSVCDEDTERLFGMAANHMITVKGVALSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGMEPVEAMKSYLLKVTELCPDWLAEAQGQPPGNAGMVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMATGQGNTAEWGANEEIFAAASEGDVVRIRDLVSSGVKVDAQDEEGRTPLHFAADRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAEESVKHLLIRPEGSAA 281          
BLAST of mRNA_Ecto-sp13_S_contig1894.5997.1 vs. uniprot
Match: A0A7S4V181_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4V181_GUITH)

HSP 1 Score: 112 bits (280), Expect = 4.750e-25
Identity = 68/189 (35.98%), Postives = 108/189 (57.14%), Query Frame = 1
Query:   52 FGMAANHMITVKGVALSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGVEPVEAMKSYLLKVTELCPDWLAEAQGQPPGDAGTVT-QEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMAAGQGNTAEWGANEEIFAAASDGDVVQIRDLVSSGVKVDAQDEEGRTPLHFAADRGQS 615
            F  AAN+ I     +LSS+Q+L LY+L+KQAT G C+ PKPG +D VG+AKW AW  L G+   EA + Y+ +V  +CP W         G+ G V    D+ +++++    K+++   A +  G +VSTM + Q    +   + ++F     G   ++  L+  G +V+ +DE+G+T LHFAAD G +
Sbjct:    4 FKNAANY-IRNPPTSLSSEQQLRLYALYKQATVGKCDAPKPGFLDFVGKAKWSAWKELEGMTQEEAEEEYVKEVDSICPQWR--------GNTGQVEPNRDVHEEIEFLLERKDDNRTNATMKLGPSVSTMRS-QCEDEDVANDLDVFDLYGRGRKDELTLLLKDGSRVNQKDEDGQTLLHFAADAGDA 182          
BLAST of mRNA_Ecto-sp13_S_contig1894.5997.1 vs. uniprot
Match: A0A058ZYY6_EUCGR (ACB domain-containing protein n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A058ZYY6_EUCGR)

HSP 1 Score: 109 bits (273), Expect = 4.050e-23
Identity = 64/175 (36.57%), Postives = 90/175 (51.43%), Query Frame = 1
Query:   97 LSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGVEPVEAMKSYLLKVTELCPDWLAEAQGQPPGDAGTVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMAAGQGNTAEWGANEEIFAAASDGDVVQIRDLVSSGVKVDAQDEEGRTPLHFAADRGQSSV 621
            +SSD +L+LY L+K ATEG C  P+P  + +  RAKW AWN+L  + P EAM+ Y+  VTEL P W+A +  +  G  G     + K  +                  G   ST    +  T      + I A A +G++  +   V +GV V+ +D EGRTPLH+A DRG S V
Sbjct:  145 VSSDAQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWNKLGAMPPEEAMQKYIDIVTELYPTWIAGSSMKSKGSHGDAPSTEAKGPM------------------GPVFSTFVHEEPGTES--KLDAIHAFAREGEIDNLLKCVEAGVSVNVKDSEGRTPLHWAVDRGHSKV 299          
BLAST of mRNA_Ecto-sp13_S_contig1894.5997.1 vs. uniprot
Match: A0A1Q3D9C9_CEPFO (ACBP domain-containing protein/Ank_2 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D9C9_CEPFO)

HSP 1 Score: 107 bits (266), Expect = 2.690e-22
Identity = 60/175 (34.29%), Postives = 93/175 (53.14%), Query Frame = 1
Query:   97 LSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGVEPVEAMKSYLLKVTELCPDWLAEAQGQPPGDAGTVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMAAGQGNTAEWGANEEIFAAASDGDVVQIRDLVSSGVKVDAQDEEGRTPLHFAADRGQSSV 621
            +S+D +L+LY L+K ATEG C  P+P  + +  RAKW AW +L  + P +AM+SY+  VTEL P WLA + G+  G  G     + K+ +                  G   S+    + +  E    + I A A +G+V  +   + SG+ V+ +D EG+TPLH+A DRG  ++
Sbjct:  122 VSNDVQLQLYGLYKIATEGPCSTPQPSALKMAARAKWQAWQKLGAMPPEDAMQSYIDIVTELYPSWLAGSAGKSKGGDGDALSAEGKRSM------------------GPVFSSFVYEEESGTEL-KMDAIHAFAREGEVDNLLKCIDSGISVNLRDSEGQTPLHWAVDRGHFNI 277          
BLAST of mRNA_Ecto-sp13_S_contig1894.5997.1 vs. uniprot
Match: A0A6J1I6A7_CUCMA (acyl-CoA-binding domain-containing protein 1-like n=4 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1I6A7_CUCMA)

HSP 1 Score: 106 bits (264), Expect = 6.270e-22
Identity = 64/176 (36.36%), Postives = 91/176 (51.70%), Query Frame = 1
Query:   97 LSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGVEPVEAMKSYLLKVTELCPDWLAEAQGQPPGDAGTVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMAAGQ-GNTAEWGANEEIFAAASDGDVVQIRDLVSSGVKVDAQDEEGRTPLHFAADRGQSSV 621
            +S++ +L+LY  +K ATEG C  P+P  + +  RAKW AW +L  + P EAM+ Y+  VTEL P W+A A G+          +D +  +                  G   ST    + GN  E    E I A A +G++  +   V SGV V+ +D EGRTPLH+A DRG S+V
Sbjct:  141 VSNEVQLQLYGYYKIATEGPCSTPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDLVTELYPSWVAGASGKSKDGNADAKSKDSRGPM------------------GPVFSTFVYEETGNDLEL---EAIHAFAREGELENLLKSVESGVSVNIKDSEGRTPLHWAVDRGHSNV 295          
BLAST of mRNA_Ecto-sp13_S_contig1894.5997.1 vs. uniprot
Match: A0A6A1V1D0_9ROSI (Acyl-CoA-binding domain-containing protein 2 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1V1D0_9ROSI)

HSP 1 Score: 105 bits (262), Expect = 9.660e-22
Identity = 65/175 (37.14%), Postives = 92/175 (52.57%), Query Frame = 1
Query:   97 LSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGVEPVEAMKSYLLKVTELCPDWLAEAQGQPPGDAGTVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMAAGQGNTAEWGANEEIFAAASDGDVVQIRDLVSSGVKVDAQDEEGRTPLHFAADRGQSSV 621
            +SSD +L+LY L+K ATEG C  P+P  + +  RAKW AW +L  + P EAM+ Y+  VTEL P WLA +  +  G  G     D +  +              G  F   V    AG  N ++  A   I A A +G++  +   + SGV V+ +D EGRTPLH+A DRG  ++
Sbjct:  123 VSSDVQLKLYGLYKIATEGPCSTPQPSPLKMTSRAKWQAWQKLGAMPPEEAMQKYIDIVTELYPSWLAGSTLKSRGGEGDALSADTRGPM--------------GPVFSTFVYEEEAG--NESKMDA---IHAFAREGELDNLLKCIESGVSVNTRDSEGRTPLHWAVDRGHLNI 278          
BLAST of mRNA_Ecto-sp13_S_contig1894.5997.1 vs. uniprot
Match: A0A1W0A4R9_9STRA (Acyl-CoA-binding domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4R9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.000e-21
Identity = 68/196 (34.69%), Postives = 98/196 (50.00%), Query Frame = 1
Query:   37 DTERLFGMAANHMITVKGVALSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGVEPVEAMKSYLLKVTELCPDWLAEAQGQPPGDAGTVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMAAGQGNTAEWGANEEIFAAASDGDVVQIRDLVSS-GVKVDAQDEEGRTPLHFAADRGQSSV 621
            D ++ F  AA          LS++ +L LY+ +KQAT GDC   KP  ID V +AKW AW  ++G+   EA K YL  V+ +CP++    +       GT              SD+E +++G     G   S +   +  T EW   E  F  AS G+V +I  ++ +    +D QDEEGRT LH+A DRGQ+  
Sbjct:   43 DLDKHFEHAA--AFVASAARLSTENKLVLYAFYKQATTGDCTLTKPSAIDFVAKAKWDAWMGIQGMSREEAQKRYLEIVSSVCPNYQYGCEIVEQNADGT--------------SDEESEDDGGNFTIGSHTSQVIVDK-TTEEWQVVENEFHFASTGNVHEIMHMLDAHDTDIDKQDEEGRTMLHWAVDRGQTDT 221          
BLAST of mRNA_Ecto-sp13_S_contig1894.5997.1 vs. uniprot
Match: A0A8B8JIJ5_ABRPR (acyl-CoA-binding domain-containing protein 1 isoform X2 n=2 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JIJ5_ABRPR)

HSP 1 Score: 105 bits (261), Expect = 1.380e-21
Identity = 64/178 (35.96%), Postives = 95/178 (53.37%), Query Frame = 1
Query:   97 LSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGVEPVEAMKSYLLKVTELCPDWLAEAQGQPPGDAGTVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMAAGQGNTAEWGAN---EEIFAAASDGDVVQIRDLVSSGVKVDAQDEEGRTPLHFAADRGQSSV 621
            +SSD +L+LY L+K ATEG C  P+P  + +  RAKW AW +L  + P +AM+ Y+  VTEL P WL         D  ++     +++   EG     +  GA    G   ST    +    E+G++   E I   A +GD+  +   + +GV V+ +D EGRTPLH+A DRG  +V
Sbjct:  121 VSSDVQLQLYGLYKIATEGPCSTPQPSPLKMTARAKWQAWQKLGAMPPEDAMQKYIDIVTELYPTWL---------DGSSLVMFLQQRNKSGEGGGPSSEARGA---MGPVFSTFVYEE----EYGSDSQMEAIHGFAREGDMANLLKCIENGVSVNLKDSEGRTPLHWAVDRGHLNV 282          
BLAST of mRNA_Ecto-sp13_S_contig1894.5997.1 vs. uniprot
Match: A0A8B8QPN5_9MYRT (acyl-CoA-binding domain-containing protein 1-like n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8QPN5_9MYRT)

HSP 1 Score: 105 bits (261), Expect = 1.570e-21
Identity = 59/175 (33.71%), Postives = 89/175 (50.86%), Query Frame = 1
Query:   97 LSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGVEPVEAMKSYLLKVTELCPDWLAEAQGQPPGDAGTVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMAAGQGNTAEWGANEEIFAAASDGDVVQIRDLVSSGVKVDAQDEEGRTPLHFAADRGQSSV 621
            +++D +L+LY L+K ATEG C  P+P  + +  RAKW AWN+L  + P EAM+ Y+  VTEL P W+A +  +  G  G     + K  +              G  F   V   +  +         + I A A +G++  +   +  GV V+ +D EGRTPLH+A DRG + V
Sbjct:  136 VANDVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWNKLGAMPPEEAMQKYIDIVTELYPSWIAGSSMKSKGSHGDAPSAETKGPM--------------GPVFSTFVHEESGSESKL------DAIHAFAREGEIDNLLKCIEGGVSVNVKDSEGRTPLHWAVDRGHAKV 290          
BLAST of mRNA_Ecto-sp13_S_contig1894.5997.1 vs. uniprot
Match: A0A067KLG7_JATCU (ACB domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067KLG7_JATCU)

HSP 1 Score: 105 bits (261), Expect = 1.630e-21
Identity = 64/176 (36.36%), Postives = 93/176 (52.84%), Query Frame = 1
Query:   97 LSSDQRLELYSLFKQATEGDCEDPKPGLIDLVGRAKWGAWNRLRGVEPVEAMKSYLLKVTELCPDWLA-EAQGQPPGDAGTVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMAAGQGNTAEWGANEEIFAAASDGDVVQIRDLVSSGVKVDAQDEEGRTPLHFAADRGQSSV 621
            +S+D +L+LY+L+K ATEG C  P P  + +  RAKW AW +L  + P +AM+ Y+  VTEL P W +  A  +  GD G     D+K                A +G   +        GN ++    E+I A A +GDV  + + + SG  V+ +D EGRTPLH+A DRG  +V
Sbjct:  138 VSTDVQLQLYALYKIATEGPCSTPPPSALKMSARAKWQAWQKLGAMPPEDAMQKYIDIVTELYPSWASGSAMKRKDGD-GDARSSDVK----------------ASMGPVFSTFVFEEESGNESKL---EDIHAFAREGDVKNLLNCIESGASVNLKDSEGRTPLHWAVDRGHLNV 293          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1894.5997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWL4_9PHAE5.370e-13895.37ACB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4V181_GUITH4.750e-2535.98Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A058ZYY6_EUCGR4.050e-2336.57ACB domain-containing protein n=2 Tax=Eucalyptus g... [more]
A0A1Q3D9C9_CEPFO2.690e-2234.29ACBP domain-containing protein/Ank_2 domain-contai... [more]
A0A6J1I6A7_CUCMA6.270e-2236.36acyl-CoA-binding domain-containing protein 1-like ... [more]
A0A6A1V1D0_9ROSI9.660e-2237.14Acyl-CoA-binding domain-containing protein 2 n=1 T... [more]
A0A1W0A4R9_9STRA1.000e-2134.69Acyl-CoA-binding domain-containing protein n=1 Tax... [more]
A0A8B8JIJ5_ABRPR1.380e-2135.96acyl-CoA-binding domain-containing protein 1 isofo... [more]
A0A8B8QPN5_9MYRT1.570e-2133.71acyl-CoA-binding domain-containing protein 1-like ... [more]
A0A067KLG7_JATCU1.630e-2136.36ACB domain-containing protein n=1 Tax=Jatropha cur... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1894contigEcto-sp13_S_contig1894:9365..12722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score384.4
Seed ortholog evalue4.5e-104
Seed eggNOG ortholog2880.D7G738
Preferred nameACBD6
Model size1205
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0019637,GO:0019693,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Exons6
EggNOG free text desc.acyl-coa-binding protein
EggNOG OGsCOG4281@1,KOG0817@2759
Ec32 ortholog descriptionmembrane acyl-CoA binding protein
Ec32 orthologEc-01_011160.1
Cds size846
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1894.5997.1prot_Ecto-sp13_S_contig1894.5997.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1894 9724..12722 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462967.0645967-UTR-Ecto-sp13_S_contig1894:9364..97231681462967.0645967-UTR-Ecto-sp13_S_contig1894:9364..9723Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1894 9365..9723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462967.0770655-CDS-Ecto-sp13_S_contig1894:9723..98371681462967.0770655-CDS-Ecto-sp13_S_contig1894:9723..9837Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1894 9724..9837 -
1681462967.0928695-CDS-Ecto-sp13_S_contig1894:10602..107701681462967.0928695-CDS-Ecto-sp13_S_contig1894:10602..10770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1894 10603..10770 -
1681462967.1044626-CDS-Ecto-sp13_S_contig1894:11251..113601681462967.1044626-CDS-Ecto-sp13_S_contig1894:11251..11360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1894 11252..11360 -
1681462967.1191516-CDS-Ecto-sp13_S_contig1894:11748..119971681462967.1191516-CDS-Ecto-sp13_S_contig1894:11748..11997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1894 11749..11997 -
1681462967.1296225-CDS-Ecto-sp13_S_contig1894:12259..124291681462967.1296225-CDS-Ecto-sp13_S_contig1894:12259..12429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1894 12260..12429 -
1681462967.139725-CDS-Ecto-sp13_S_contig1894:12686..127221681462967.139725-CDS-Ecto-sp13_S_contig1894:12686..12722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1894 12687..12722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1894.5997.1

>prot_Ecto-sp13_S_contig1894.5997.1 ID=prot_Ecto-sp13_S_contig1894.5997.1|Name=mRNA_Ecto-sp13_S_contig1894.5997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp
MAAMEPPSVCDEDTERLFGMAANHMITVKGVALSSDQRLELYSLFKQATE
GDCEDPKPGLIDLVGRAKWGAWNRLRGVEPVEAMKSYLLKVTELCPDWLA
EAQGQPPGDAGTVTQEDMKKDLQWEGSDKEEDENGAGLGFGVTVSTMAAG
QGNTAEWGANEEIFAAASDGDVVQIRDLVSSGVKVDAQDEEGRTPLHFAA
DRGQSSVISSLLALGAAVDSRDADGMTPLAYAVACENEKEVELLVQAGAD
ANAADNDGCTPMSSAEESVKHLLIRPDCSAA*
back to top

mRNA from alignment at Ecto-sp13_S_contig1894:9365..12722-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1894.5997.1 ID=mRNA_Ecto-sp13_S_contig1894.5997.1|Name=mRNA_Ecto-sp13_S_contig1894.5997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3358bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1894:9365..12722- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCCATGGAACCCCCATCTGTGTGCGACGAGGTGTGCGTAGTGTG CTCCACCTTGTGAGACAATGACACAACAATTATGAAGGTGTTCACGACGA AAAGGACATGTAGTTGCGGAGCAAACCATGTCTCCAAGAACCAAGTCTGA ATCCGCGTGTTCATCCCGCACGAAGCACGACTGCCTTTCGTGCAACCTGC TGCACGTCATCTCCGCGCGCGGCACTTACGAACATGCGCCTGATTCTCCC ATATTTGAACCAATGCTGTTTTTTTCTGCATGTCGAAACATAGGATACAG AGCGACTGTTCGGGATGGCGGCGAACCACATGATCACGGTGAAGGGTGTG GCTCTATCGTCTGACCAGAGGTTGGAGCTGTATTCGCTGTTCAAGCAGGC CACGGAAGGCGACTGTGAAGATCCCAAACCTGGACTCATCGATCTTGTCG GTAGAGCAAAATGGTCAGTAAGGGATTAGTGTCTACCGGACCTTTGAGGA ACTATGGTTCAAACGGTACCGGCGGATGGGTGTGGCCGTGTGGGCGTAAG TAGGTCAACGGCGCGCTCCTCAGCAGGGTTCCGGGATGCTCCGGGTTCTA CCAATCCCTTCGGTGCCATCCATCTATTGCTCACAACTCGCCCTCGTTCC TGTCGTTGTTACGTCCCCGTTTCCCTCCATGCCGGCTTGTCGATCGACCT CGTTCTCTCTGTTCGCTCCCGGCAGGGGAGCGTGGAATCGACTCCGCGGG GTGGAACCTGTAGAGGCCATGAAGTCCTACCTCCTCAAGGTTACGGAGCT TTGTCCCGACTGGTTAGCTGAGGCTCAGGGCCAGCCCCCGGGCGACGCGG GGACGGTCACCCAAGAGGACATGAAGAAAGACTTGCAGTGGGAGGGCAGC GACAAGGAAGAGGATGAGAACGGGGCCGGTCTCGGCTTTGGAGTGACCGT CAGTACCATGGCAGCGGGACAGGGGTGAGGCGGGTATTCACACGAGGGCA CGACCTTCATTGCTGGCGCCGTACAGCATGGCAAGATTCGATCTAGGTTC TCCGCTCCAGAGCACTTCGAAGTTGTACCAAATTTCCTGCTGTTATTAGA AACGAGTTTGTTTGGTATGAAGAACTATCGATGTAGGCAAGGGCACGTTG TCCGGCTAATGCTAACTTTCAAGACGCGTTGTTCCTTCTTCTGTGGAACA ACGGCGTGATTTCAACGGAGCCCGCACCAGGACAGTAGTCGAGATGCATG TCTTCGCCTTGTGTGTCTCGCAGCGGTGTTGTTGCCGTAGCGCCTCACAC GCCCAGAGACTCCACCCAATCGAATCAACCGTTCCAGTCAAACGTGTCCC CGGATCCGATAGGAACACGGCGGAATGGGGCGCGAACGAGGAGATTTTCG CGGCTGCCAGCGATGGGGACGTCGTCCAAATACGCGATCTCGTATCTAGC GGGGTTAAGGTTGACGCGCAGGTACTTTTCTGCTGTCTGCTGCACCTTAT CATGCTATTCACAGTGCGGTCGCAAGGTTTCCTTGACGTGTGGTAAGGTT CGAGCTTTTTAGCTTCCGGTTAGTGATGAGCATGAGCATCAGCCCCGATG CGTGCCATCTACACGAGATACCACTTGGAGGCGAATCCACCTCGGTAGAC TCCGATATTGTCCAGTTTACCTTGTACCCACGTTCCTGTACATATGTATG GCGGCAGACCAAGCCTGCATGGAAAGGTCTGGTCCCTTGTTGTTTTATCA ACGATTCATGGTCCTCTTAGGCCTTTCGCTCGAAGACGAGTAAGTGACAG ACTAGAGCTCCTTAAAACCTGAAAGATGGCAGCAACCATAGTGCGTGCTG CGTGATGATGGCATCGCCTTCGCGTCGTTGTCGTGAGGGGCGACGGGAAA TGCTAACAGCAAGAACCATGTGGTTGGTGGATGCTGCTGCATGACCTTTC AGGACGAGGAGGGAAGAACGCCTCTCCACTTTGCGGCTGACCGGGGCCAG TCCTCGGTGATCTCGAGCCTCCTTGCCCTGGGAGCGGCGGTGGACTCTCG GGACGCGGACGGCATGACACCCCTCGCGTACGCCGTAGCCTGCGAGAACG AGAAAGAGGTCGAGCTCTTGGTGAGGTCAAATCCTGAGCATGCAGGGTAG TTGAACAAAGGGCGGGCGTTTTCGACGGCTGCAGCGTCTATGAGTTTGTC GCATGTATGTTGGCACTTATCGAACGTGGGAAGCAAGGGCGGCGCGCTGT CTGTGGCTATTGATGTGCTTGAGAAGGTTAGCGTCGTCTGTTCCCTGGCA TAGGCATGACTTCGTATTGTGACGTTTCTACGCGTCGCGCCGAAAATTGA GATTCCGCCATAGCAGTGGTCCGCTGTTGCCGTGCCATGTGTGCGTCGGG CGTGGCACACATTTCCTAGCTCAAGACGACCCAGCCTTGCTCTCCGCACC CGCTTGCTCTGTTTCGGAAATCAATTTTGGTTCTCTGGTCTCGCCCAGTG TTGGCTTGGCTGCTCCTGTAAGTGATTCAAAGGGTTCCCGGTAGCGAATT TGAACCTGCTGTTGTCTGGGGAGAAAGGCCTGCCCTTGTAAAGGGCTCTG ACAAGGGCTCTGGATGCGACGCCGTTCAGCTCGGACGTTCAAAAATGTGA TTGTGCTATATCTCGTGGGCCCTTACTCACGTGCTTGTGTCCATCAAAAC GCAGACATGCAATGTTCGGTGAACACGCCGAGAAGGCCGCCATAAGCTCC ATGTCCATCGATCGCAGCACAACACGCATGCTGTACGTCAAGCGACTTTC AAGATGGGTGTCGGTCGATTGACCCCCGCATCGCTATGCGATACTGTCTT GTGATTCGCTCGGCTTTGTTTTGGTGCTGGAGCAGGTGCAAGCCGGGGCG GACGCGAACGCCGCGGACAATGATGGCTGCACGCCGATGTCCTCGGCGGA GGAAAGTGTCAAGCATCTGCTGATAAGGCCAGATTGTTCCGCCGCGTGAA ACCTATCCATCACAGCGCGCGTTGCCGCGTTGAAAACAGGTCAATGGCAG AATGTTGGTGTATTGTGTTAACCGTGACGTCGCGTGTCAGTATTTTGTGC GGATACCGTACTGGTGTAGTGCTAGTTGTCCCATTTGGGGCAGAGGACGT TGTTCATGGCACCGTTGCGTTCATGCTCTGCATGTGGGTTGCTGTTTTGT GAGGGTTAGCGTGGCTTCTTGAAGAAAGATCGTTTGATTTCACGGGCGTC CGCCCGTCGTATGTTTAGTACGTGTGTGTGGATCGGTTCTTGTGGCGTGT GGAATGTATGCAATACGACAGAGACGATCAGCACTTTCATAACCAACAGG CCAGCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1894:9365..12722-

>mRNA_Ecto-sp13_S_contig1894.5997.1 ID=mRNA_Ecto-sp13_S_contig1894.5997.1|Name=mRNA_Ecto-sp13_S_contig1894.5997.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1894:9365..12722- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCCATGGAACCCCCATCTGTGTGCGACGAGGATACAGAGCGACT
GTTCGGGATGGCGGCGAACCACATGATCACGGTGAAGGGTGTGGCTCTAT
CGTCTGACCAGAGGTTGGAGCTGTATTCGCTGTTCAAGCAGGCCACGGAA
GGCGACTGTGAAGATCCCAAACCTGGACTCATCGATCTTGTCGGTAGAGC
AAAATGGGGAGCGTGGAATCGACTCCGCGGGGTGGAACCTGTAGAGGCCA
TGAAGTCCTACCTCCTCAAGGTTACGGAGCTTTGTCCCGACTGGTTAGCT
GAGGCTCAGGGCCAGCCCCCGGGCGACGCGGGGACGGTCACCCAAGAGGA
CATGAAGAAAGACTTGCAGTGGGAGGGCAGCGACAAGGAAGAGGATGAGA
ACGGGGCCGGTCTCGGCTTTGGAGTGACCGTCAGTACCATGGCAGCGGGA
CAGGGGAACACGGCGGAATGGGGCGCGAACGAGGAGATTTTCGCGGCTGC
CAGCGATGGGGACGTCGTCCAAATACGCGATCTCGTATCTAGCGGGGTTA
AGGTTGACGCGCAGGACGAGGAGGGAAGAACGCCTCTCCACTTTGCGGCT
GACCGGGGCCAGTCCTCGGTGATCTCGAGCCTCCTTGCCCTGGGAGCGGC
GGTGGACTCTCGGGACGCGGACGGCATGACACCCCTCGCGTACGCCGTAG
CCTGCGAGAACGAGAAAGAGGTCGAGCTCTTGGTGCAAGCCGGGGCGGAC
GCGAACGCCGCGGACAATGATGGCTGCACGCCGATGTCCTCGGCGGAGGA
AAGTGTCAAGCATCTGCTGATAAGGCCAGATTGTTCCGCCGCGTGA
back to top