mRNA_Ecto-sp13_S_contig1890.5977.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1890.5977.1
Unique NamemRNA_Ecto-sp13_S_contig1890.5977.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1890.5977.1 vs. uniprot
Match: D8LD57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD57_ECTSI)

HSP 1 Score: 495 bits (1275), Expect = 5.630e-165
Identity = 274/302 (90.73%), Postives = 278/302 (92.05%), Query Frame = 1 
Query:   28 IWRGVRGSLVGARDFFGHLKTYLGFYLREEVVMYPPLLEALRRDPPALVIADRRASAAFRACSRLGLRCVVNSAGLLGDLDRPPNSIPAPYTGFPLEGQTIGQRVHSSLFRLVLALSRMQAAREADHDLALWADDRPVLGYEEGPHXXXXXXXXXXXXXXXDPRSSTVMALGNSCFGSLEYPRELPSRVHMVGPLWMSSWTVDDQNHLNGGHRGESHFATGHHGDTGAGSPAKSKKGKDDDGGAKAXXXXXXPARKGFARDAAVAEGGDGAARGNEALEDVWSWLEPEGVKEDDAAPVVVVQ 933
            IWRGVRGSLVGARDFFGHLKTYLGFYLREE VMY PLLEALRRDPPALVIADRRASAAFRACSRLGLRCVVNSAGLLGDLDRPPNSIPAPYTGFPLEGQTIGQRVHSSLFRLVLALSRMQAAREADHDLA WA+DRPVLG EEGPHXXXXXXXXXXXXX  DPRSSTVMALGNSCFGSLEYPRELP+RVHMVGPLWMSSWTVDDQNH NGGHR E HFA+GHHG+TGAGSPAKSKK KD       XXXXX  ARKGFARD A  EGGDG ARGNEALEDVWSWLEPEGV EDDAAPVVVVQ
Sbjct:  250 IWRGVRGSLVGARDFFGHLKTYLGFYLREEAVMYAPLLEALRRDPPALVIADRRASAAFRACSRLGLRCVVNSAGLLGDLDRPPNSIPAPYTGFPLEGQTIGQRVHSSLFRLVLALSRMQAAREADHDLASWANDRPVLGSEEGPHXXXXXXXXXXXXX--DPRSSTVMALGNSCFGSLEYPRELPARVHMVGPLWMSSWTVDDQNHFNGGHRSEGHFASGHHGNTGAGSPAKSKKSKDXXXXXX-XXXXXATARKGFARDTAAMEGGDGTARGNEALEDVWSWLEPEGVGEDDAAPVVVVQ 548
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BLAST of mRNA_Ecto-sp13_S_contig1890.5977.1 vs. uniprot
Match: A0A6H5K4N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4N1_9PHAE)

HSP 1 Score: 434 bits (1116), Expect = 1.670e-141
Identity = 238/268 (88.81%), Postives = 242/268 (90.30%), Query Frame = 1 
Query:  145 ALRRDPPALVIADRRASAAFRACSRLGLRCVVNSAGLLGDLDRPPNSIPAPYTGFPLEGQTIGQRVHSSLFRLVLALSRMQA---AREADHDLALWADDRPVLGYEEGPHXXXXXXXXXXXXXXX--DPRSSTVMALGNSCFGSLEYPRELPSRVHMVGPLWMSSWTVDDQNHLNGGHRGESHFATGHHGDTGAGSPAKSKKGKDDDGGAKAXXXXXXPARKGFARDAAVAEGGDGAARGNEALEDVWSWLEPEGVKEDDAAPVVVVQ 933
            ALRRDPPALVIADRRASAAFRACSRLGLRCVVNSAGLLGDLDRPPNSIPAPYTGFPLEGQTIGQRVHSSLFRLVLALSRMQA   AREADHDLA WADDRPVLG EEGPH      XXXXXXXXX  DPRSSTVMALGNSCFGSLEYPRELP+RVHMVGPLWMSSWTVDDQNHLNGG R ESHFATGHHG+TGAGSP KSK G+DDDGGAKA      PAR GFARDAAV EGGDGAARGNEALEDVWSWLEPEGV+ DDAAPVVVVQ
Sbjct:  268 ALRRDPPALVIADRRASAAFRACSRLGLRCVVNSAGLLGDLDRPPNSIPAPYTGFPLEGQTIGQRVHSSLFRLVLALSRMQARSAAREADHDLASWADDRPVLGSEEGPHHRHHQDXXXXXXXXXXHDPRSSTVMALGNSCFGSLEYPRELPARVHMVGPLWMSSWTVDDQNHLNGGRRSESHFATGHHGNTGAGSPVKSKPGEDDDGGAKAGGGAA-PARNGFARDAAVTEGGDGAARGNEALEDVWSWLEPEGVEGDDAAPVVVVQ 534
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1890.5977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD57_ECTSI5.630e-16590.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4N1_9PHAE1.670e-14188.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1890contigEcto-sp13_S_contig1890:7885..12454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score75.1
Seed ortholog evalue6.5e-11
Seed eggNOG ortholog42099.EPrPV00000016728
Model size935
KEGG rclassRC00005,RC00033,RC00049,RC00059,RC00078,RC00171,RC00397,RC00523,RC00529,RC00708,RC02748
KEGG koko:K00699,ko:K04628
KEGG ReactionR01383,R01500,R02358,R02389,R02478,R02502,R02902,R03091,R04322,R04352,R04353,R04354,R04683,R06277,R07106,R08259,R08261,R08262,R08263,R08615,R09426,R09427,R09428,R10804
KEGG Pathwayko00040,ko00053,ko00140,ko00565,ko00600,ko00830,ko00860,ko00980,ko00982,ko00983,ko01100,ko01110,ko05204,map00040,map00053,map00140,map00565,map00600,map00830,map00860,map00980,map00982,map00983,map01100,map01110,map05204
KEGG ModuleM00014,M00067,M00129
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.UDP-glucosyl transferase family protein. Source PGD
EggNOG OGs1MCXE@121069,KOG1192@1,KOG1192@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_000540.1
EC2.4.1.17,2.4.1.47
Cds size933
COG Functional cat.CG
CAZyGT1
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1890.5977.1prot_Ecto-sp13_S_contig1890.5977.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1890 7885..12452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462965.6913192-CDS-Ecto-sp13_S_contig1890:7884..80281681462965.6913192-CDS-Ecto-sp13_S_contig1890:7884..8028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1890 7885..8028 +
1681462965.7023141-CDS-Ecto-sp13_S_contig1890:8956..91161681462965.7023141-CDS-Ecto-sp13_S_contig1890:8956..9116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1890 8957..9116 +
1681462965.7129424-CDS-Ecto-sp13_S_contig1890:9769..98521681462965.7129424-CDS-Ecto-sp13_S_contig1890:9769..9852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1890 9770..9852 +
1681462965.7215185-CDS-Ecto-sp13_S_contig1890:10346..105591681462965.7215185-CDS-Ecto-sp13_S_contig1890:10346..10559Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1890 10347..10559 +
1681462965.7300603-CDS-Ecto-sp13_S_contig1890:11023..113111681462965.7300603-CDS-Ecto-sp13_S_contig1890:11023..11311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1890 11024..11311 +
1681462965.7393217-CDS-Ecto-sp13_S_contig1890:12407..124521681462965.7393217-CDS-Ecto-sp13_S_contig1890:12407..12452Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1890 12408..12452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1890.5977.1

>prot_Ecto-sp13_S_contig1890.5977.1 ID=prot_Ecto-sp13_S_contig1890.5977.1|Name=mRNA_Ecto-sp13_S_contig1890.5977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
GGGWGAGLGIWRGVRGSLVGARDFFGHLKTYLGFYLREEVVMYPPLLEAL
RRDPPALVIADRRASAAFRACSRLGLRCVVNSAGLLGDLDRPPNSIPAPY
TGFPLEGQTIGQRVHSSLFRLVLALSRMQAAREADHDLALWADDRPVLGY
EEGPHHHHHQDHHHHHHHQQDPRSSTVMALGNSCFGSLEYPRELPSRVHM
VGPLWMSSWTVDDQNHLNGGHRGESHFATGHHGDTGAGSPAKSKKGKDDD
GGAKAGGGGAAPARKGFARDAAVAEGGDGAARGNEALEDVWSWLEPEGVK
EDDAAPVVVVQ
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mRNA from alignment at Ecto-sp13_S_contig1890:7885..12454+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1890.5977.1 ID=mRNA_Ecto-sp13_S_contig1890.5977.1|Name=mRNA_Ecto-sp13_S_contig1890.5977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1890:7885..12454+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGCGGGTGGGGCGCCGGGCTCGGTATCTGGAGGGGGGTGAGAGGGAG
CTTGGTGGGGGCAAGGGACTTCTTCGGGCACCTGAAGACGTACCTCGGGT
TTTACCTCCGGGAGGAGGTGGTGATGTACCCCCCTTTGTTAGAGGTAAGT
TGCTGGGTGTAACGGTTTTCTGCGTGCACATGAGATTTACCCGTACACAG
CCGCAGCGGTTTGTGCGTGCATACCAGTGCACCTGTATACAGTGGTAGTC
GGTAGTTTTTTTGTTTTTAGTCCGGTTTATCTGACCTCGGTGTGGTCGAC
CGTAGTTTGCGGACCGTGTGTTCGAGCAGGACAAATGGTTCGAAGTTTCC
AGATCTGAATCGATGTCGCTGGGTAGAGAGAAGTCCAGAACATGAAAATC
CTGATGCCTTCATTTGACGTTGGATTTTCACTTCGATTGTTACCGACCTT
TTAAGTTGAACGTGACGCTGCAAGCATTGCAGGCTGGTTGCGAAGTCGTG
GCTGAAAGAAGTATGCTACTGTATCAAAGTGGTTATCGTACGGGGCTGGC
GTTTGTGGCTTGAATTTAAAGAGAGACGGTAGAAGAGAATATGAGCCTGC
ATTGATTTCCGCATTCCACGCGACAGGAGTACGATCAGACGATACGCGCA
TCCGTGTTAGAGCGACACCGGCAAAAGTGTAGACACGCAGTGAATGCTGC
TGTCGAGCATTGGCTAAAATGCTGCTCCCGGCTACCCATCGAGAGCTGTT
GATGGGGTGATGGGCGAATCTCACTGCTATTTCCAAGCACGTGTGTGCCA
GATCGGATATGAGCAGAAAACCTCTCTCCCCGTCCCAGATTCTCCCCTCG
GTTTTATTTTAAGTGATTCGTATGAGCTACACGGATTGTTACCGGTAACC
AAACGAGGCGGTTAGCAACAACAGCGGTGATTTTCCCGCTACACCCGGGG
TAATACTCTGCGGTGCCTCCTTTCACACAGACACGTGGACACACACACAC
AGATGCCACATTTTCTGGATGCGATAGTAAAACTTGACCCTTCTTCAATT
GTATTTTCTTGCGTGCGAACAGGCTCTTCGGCGGGACCCTCCCGCCCTCG
TCATTGCGGACCGGAGAGCATCGGCGGCGTTCCGAGCGTGCTCGAGGCTA
GGCCTGCGCTGCGTCGTGAACAGCGCGGGGCTGCTAGGCGACCTCGATCG
GCCGCCAAACTCTATCCCCGCTCCCTACACTGGTGAGGGCGATGACACCG
CGGTTGAAGTCGTTGTGTTTTCAACAGATAGGACAACATTGTAATGTTGT
AATTATGTGAAGACAGGATTAACACCAGCAACAGCAACGACAACAACAAC
AATCACCGTGGTTATACCTGTTAGATTAATGTCACCATCATGACGATATT
GTAGTACCTCAATCTCTTTTTGTTTTCACGACGGGCGTGAGTCGGGAGGG
GCAACGTGCAGGAGTTTTTCGAAGCGTATCTACACCGTGTTAAGGTACAC
GGGTGCCATTGACCACGACAGACGCCCGCGTAAGTTGGACCGGTACGGAT
ATTAGGTAGAAGGTGCTGGGCAGAGACCGGAACAGTTTTTATTTTGTGAA
GACAACAAATAGCGAGGAAAAGCTCTCGACGAGATGGTTTTGGTTCCAAC
CTCAGTATTTTCGGCACCGTCACTGCTGCTGTTGCTGCAGATTGCAGTTG
AGCTTTGATGGTCTGTGAAGGGGGGGTAGTATCTCGCGTATTCATCCTAC
GGTGCTCACCCTGATAAATGGTCGTGCGGATACAGCTGGAGCTCAGCGAC
GCACTATGTACGATTGACCTCCCTCCCGCTCAGTTCCATGCTAAACTTGC
TTCGTGGCCGTGCTATCCCTTGTCGTGATTCTCAGGTTTCCCTTTGGAGG
GTCAGACGATAGGACAGCGGGTGCACAGCAGCCTATTTCGCCTGGTGCTT
GCTTTGTCGAGGATGCAGGCAAGTCTTGCTGCCGCACCACCGGCGGTGTA
CGTATCGTTTCTGCTGATAAGTGGCGTTAGGTGCTTTAAGTGAACATTGA
ACGTAGCTCGGGTGAAGTTGTAGTAGTGTGCAGCAACGCTCCATACCGCT
GCTTGTGAATCAATTAGTCAAGCACCCGGGTACCCTACCCTGCACTGCTT
TTGTTGAACCAGCTTGATTTCTCTGCATCACGCGATTTCGCCGGCATTAT
TGCGGGCCGGTTCACCGGCGCTATGAGGGGACTGTGGAAAGTGTTTTAGA
CGCGTTCACACGGGGTCCTACAAGACAGAGAACGACGTTCCGACAACGCG
CATGGCGGCTTTGGTGAAGGCTGATTCTGTCGAATTGACGAGTGCTTCTC
ATCGGACCTGCGTGTATATCGCCGTGCCTGCTTCCGTTCATTGCTTCTTT
TCTTATCCTTTTTTTGTTTCTTGCTGTTCGTTCGGTGTCGTTTTTTTTTT
TCACCACTTTAGGCGGCTCGCGAGGCTGACCACGACTTAGCCTTGTGGGC
GGACGACCGGCCAGTTTTGGGCTACGAAGAGGGTCCGCATCATCATCACC
ACCAAGATCACCACCATCACCATCACCATCAGCAAGACCCGCGGTCGTCC
ACCGTGATGGCTCTGGGTAACAGCTGCTTTGGCAGCTTGGAGTATCCTCG
AGAGCTTCCTTCGAGAGTGCATATGGTGAGCATTACAAGACATGATTGTT
GGCGATGGCGGTGGTGGTTCAAAGTAGAATAAAAAAAAAAAAAAAGCAAA
GAAATCCCGAGTTTACACTCTTCTTGTGTGACCCGGGCTGGTGAGTCAAA
ACATATGTATTCCGAAAGGTATATTGGTCGTTGGTACGAAACGAAGAGGC
TGTACATTGCACAGATGCGTGAAGAACGTTGTTCTTTTTGGTTTGTAGAG
GTTTGCTGGGCTGTTCGAGTCAAAAACACGTCATCTTGTGTGAGCTGTTC
GAGCTTGGAAACGTCACTGATGGCAGCTGATTTACCCCCAACACATGCTT
TCCTTCCATCCTGCAGCACGTCTAGATAGCAATATGCACACAACTATGCT
CTGATGAGCCCACTCCGTAGGCGCGCCTTGGAAGTTAAACAATAGTATGG
TAACGTAAAGAACGGCTCCATGACCGCTGTAACGCACAGGTGGGTCCGTT
GTGGATGTCTTCATGGACGGTTGACGACCAGAACCATCTCAACGGCGGAC
ATCGGGGCGAGAGTCACTTCGCGACTGGCCATCACGGTGACACCGGGGCC
GGTTCTCCTGCCAAAAGCAAGAAGGGAAAGGATGACGACGGCGGTGCCAA
GGCAGGTGGTGGTGGCGCCGCTCCCGCGCGGAAAGGTTTTGCTAGAGATG
CGGCGGTGGCGGAGGGCGGGGACGGGGCGGCGAGAGGGAACGAGGCGCTG
GAGGACGTTTGGTCCTGGTTAGAGCCGGTAAGCGTGTTTGTTTTGTGGAG
TGGCACGTTGGGAGAGTTATCGCCGGCCAAGAAGGATTTCGCGTACGTAG
GCGTGTTGACGTTCAAGCGCCTTTGTATGTGCAGGTGTGTTTATCGTTAG
CGTCGACCGCGGTAGCCGGATGACCGATGAAAATACGTCAGTGTGTATGT
GTGTGTTTCGTAACGATGTCGTCTTCCGTGGTGTCCGGTCAATCTCGCGT
GAGATTGATTGCTGCTGCGGCTGCTGGGAACCCCATCTAGTCCGCGGCGT
TACGGCGAACCTGCGCTTGCTACAGCAGCGTTGGATGTAGCTGCTTGACC
CGGCAGCCTTATTTTTGCAGTGGCGGTCATGTCCAACTCCGTTCCTAGAT
TTGCACGCTCGTTCGAATGCTAAAGCCCCTGGATTGTTGCTGCTGATATT
TTTTGTGTCGACTGGTTTACCTATTTTCTCGGTCTGTTTGCCTACAACGG
TAGCCAGTGGCGTCTTCCAGCTGAAATGTAGAATGATACTCTCGCACATA
CTCACACATGCTGGAGGGACTTTTGGGTATTTGGGCGCTGGAGCACACAT
GCAATGAGCCTTAATGTTGACGCTGCCATCGGCCCCCTTAGCTTTGTTTT
TCTCCTCGTCTTCAACAATGTGATCGCTCGGGTTCTAGAACGACAGTTCT
CTTTCGGTAGAGTTCGTCTTGGGCGTCTACTGCATGTGGCGTAAGATACT
ACACGCCCTGGGCCGATTTTCATAGCTCGAGCACTCGGCTGCAAAGAGAG
AATGACGGTGCGGAATGGCGGCCTTGGGGAGCTGTCTCGTCGAGAGGTTT
CCGTCGGTGATGTTGATGCCGGTTCGCCTCTGTCTTGTGCCTGTTGGCGT
TGGTGGTGCCGTTTCGCCTCTTTCTTGTGCCTGTTGATGTTGTCGATGCC
GTTTCGCCACTGCCTTGTGCCTGTTGGCGTTGTTGAAACCGTTTCACCTC
TGTCTTGTTGCCTGTTGATGATGCCGTTTCGCCTTACCGCAGTAACTTCA
GCGTTTGTGGCGCGACCTCGTGCGTTGCTCATGTTTTTGTTCACGGCCTT
GTTGAATGCTTGGGTTTATCCAGGAGGGCGTGAAGGAAGATGACGCTGCG
CCCGTGGTGGTTGTGCAGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1890:7885..12454+

>mRNA_Ecto-sp13_S_contig1890.5977.1 ID=mRNA_Ecto-sp13_S_contig1890.5977.1|Name=mRNA_Ecto-sp13_S_contig1890.5977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1890:7885..12454+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGCGGGTGGGGCGCCGGGCTCGGTATCTGGAGGGGGGTGAGAGGGAG
CTTGGTGGGGGCAAGGGACTTCTTCGGGCACCTGAAGACGTACCTCGGGT
TTTACCTCCGGGAGGAGGTGGTGATGTACCCCCCTTTGTTAGAGGCTCTT
CGGCGGGACCCTCCCGCCCTCGTCATTGCGGACCGGAGAGCATCGGCGGC
GTTCCGAGCGTGCTCGAGGCTAGGCCTGCGCTGCGTCGTGAACAGCGCGG
GGCTGCTAGGCGACCTCGATCGGCCGCCAAACTCTATCCCCGCTCCCTAC
ACTGGTTTCCCTTTGGAGGGTCAGACGATAGGACAGCGGGTGCACAGCAG
CCTATTTCGCCTGGTGCTTGCTTTGTCGAGGATGCAGGCGGCTCGCGAGG
CTGACCACGACTTAGCCTTGTGGGCGGACGACCGGCCAGTTTTGGGCTAC
GAAGAGGGTCCGCATCATCATCACCACCAAGATCACCACCATCACCATCA
CCATCAGCAAGACCCGCGGTCGTCCACCGTGATGGCTCTGGGTAACAGCT
GCTTTGGCAGCTTGGAGTATCCTCGAGAGCTTCCTTCGAGAGTGCATATG
GTGGGTCCGTTGTGGATGTCTTCATGGACGGTTGACGACCAGAACCATCT
CAACGGCGGACATCGGGGCGAGAGTCACTTCGCGACTGGCCATCACGGTG
ACACCGGGGCCGGTTCTCCTGCCAAAAGCAAGAAGGGAAAGGATGACGAC
GGCGGTGCCAAGGCAGGTGGTGGTGGCGCCGCTCCCGCGCGGAAAGGTTT
TGCTAGAGATGCGGCGGTGGCGGAGGGCGGGGACGGGGCGGCGAGAGGGA
ACGAGGCGCTGGAGGACGTTTGGTCCTGGTTAGAGCCGGAGGGCGTGAAG
GAAGATGACGCTGCGCCCGTGGTGGTTGTGCAG
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