mRNA_Ecto-sp13_S_contig1890.5976.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1890.5976.1
Unique NamemRNA_Ecto-sp13_S_contig1890.5976.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1890.5976.1 vs. uniprot
Match: D8LD57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD57_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 3.770e-106
Identity = 169/180 (93.89%), Postives = 172/180 (95.56%), Query Frame = 1 
Query:   67 MRTKIAHKDGGGKQQRREALPEVRAGLVLVKSKDVGRSRRPRRTWVLPVLRVLALAASMLCLTPTGGMVTGMSKMDAWSAGSEHEQQHEDRRPTGVWGQRQEHVVFVGVPEESAVLPLKALAQEMIGRGYRATLALPHGFQAWAEDIPGLSFLSLKPTGGASNSNATTHSHGPPATAPQH 606
            MRTKIA KDGGGK QRREALPEVRAGLVLVKSKDVGRSRRPRRTWVLPVLRVLALAASMLCLTPTGGMVTGMSKMDAWSAGS  EQQHEDRRPTGVWGQ+QEHVVFVGVPEE+AVLPLKALAQEMIGRGYRA+LALPHGFQAW EDIPGLSFLSLKPTGGA NSNATTHSHG PAT PQH
Sbjct:    1 MRTKIARKDGGGKHQRREALPEVRAGLVLVKSKDVGRSRRPRRTWVLPVLRVLALAASMLCLTPTGGMVTGMSKMDAWSAGSGPEQQHEDRRPTGVWGQQQEHVVFVGVPEETAVLPLKALAQEMIGRGYRASLALPHGFQAWVEDIPGLSFLSLKPTGGAPNSNATTHSHGTPATTPQH 180
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BLAST of mRNA_Ecto-sp13_S_contig1890.5976.1 vs. uniprot
Match: A0A6H5K4N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4N1_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 2.390e-102
Identity = 164/180 (91.11%), Postives = 167/180 (92.78%), Query Frame = 1 
Query:   67 MRTKIAHKDGGGKQQRREALPEVRAGLVLVKSKDVGRSRRPRRTWVLPVLRVLALAASMLCLTPTGGMVTGMSKMDAWSAGSEHEQQHEDRRPTGVWGQRQEHVVFVGVPEESAVLPLKALAQEMIGRGYRATLALPHGFQAWAEDIPGLSFLSLKPTGGASNSNATTHSHGPPATAPQH 606
            MRTKIA KDGGGKQQRRE LPEVRAGLVLVKSKDVGRSRRPRRTWVLPVLRVLALAASMLCL+PTGGMVTGMSKMD WSA SE EQQHEDRRPTG WG RQEHVVFVGVPEE+AVLPLKALAQEMIGRGYRA+LALPHGFQAW EDIPGLSFLSLKPTG A NSNAT HSHGPPA  PQH
Sbjct:    1 MRTKIAQKDGGGKQQRRENLPEVRAGLVLVKSKDVGRSRRPRRTWVLPVLRVLALAASMLCLSPTGGMVTGMSKMDTWSAVSEPEQQHEDRRPTGAWGHRQEHVVFVGVPEENAVLPLKALAQEMIGRGYRASLALPHGFQAWVEDIPGLSFLSLKPTGEAPNSNATAHSHGPPAKTPQH 180
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BLAST of mRNA_Ecto-sp13_S_contig1890.5976.1 vs. uniprot
Match: W4H5Z0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H5Z0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.530e-7
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  373 HVVFVGVPEESAVLPLKALAQEMIGRGYRATLALPHGFQAWAEDIPGLSFLSL 531
            +V  V +P    VLPLK LA+E++ RGYR ++A+P   ++W  D+PGL F+SL
Sbjct:  137 YVSMVSIPIMERVLPLKHLAEELLHRGYRVSIAMPEICRSWVSDVPGLEFISL 189
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BLAST of mRNA_Ecto-sp13_S_contig1890.5976.1 vs. uniprot
Match: A0A024UVN0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVN0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.260e-7
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  373 HVVFVGVPEESAVLPLKALAQEMIGRGYRATLALPHGFQAWAEDIPGLSFLSL 531
            +V  V +P    VLPLK LA+E++ RGYR ++A+P   ++W  D+PGL F+SL
Sbjct:  128 YVSMVSIPVMERVLPLKHLAEELLQRGYRVSVAMPEICRSWVSDVPGLEFISL 180
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BLAST of mRNA_Ecto-sp13_S_contig1890.5976.1 vs. uniprot
Match: W4H8I9_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8I9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.280e-7
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  373 HVVFVGVPEESAVLPLKALAQEMIGRGYRATLALPHGFQAWAEDIPGLSFLSL 531
            +V  V +P    VLPLK LA+E++ RGYR ++A+P   ++W  D+PGL F+SL
Sbjct:  137 YVSMVSIPIMERVLPLKHLAEELLHRGYRVSIAMPEICRSWVSDVPGLEFISL 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1890.5976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LD57_ECTSI3.770e-10693.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4N1_9PHAE2.390e-10291.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4H5Z0_9STRA6.530e-747.17Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024UVN0_9STRA7.260e-747.17Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4H8I9_9STRA7.280e-747.17Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1890contigEcto-sp13_S_contig1890:5063..7704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score66.2
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog42099.EPrPV00000016728
Model size608
KEGG rclassRC00005,RC00033,RC00049,RC00059,RC00078,RC00171,RC00397,RC00523,RC00529,RC00708,RC02748
KEGG koko:K00699,ko:K04628
KEGG ReactionR01383,R01500,R02358,R02389,R02478,R02502,R02902,R03091,R04322,R04352,R04353,R04354,R04683,R06277,R07106,R08259,R08261,R08262,R08263,R08615,R09426,R09427,R09428,R10804
KEGG Pathwayko00040,ko00053,ko00140,ko00565,ko00600,ko00830,ko00860,ko00980,ko00982,ko00983,ko01100,ko01110,ko05204,map00040,map00053,map00140,map00565,map00600,map00830,map00860,map00980,map00982,map00983,map01100,map01110,map05204
KEGG ModuleM00014,M00067,M00129
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.UDP-glucosyl transferase family protein. Source PGD
EggNOG OGs1MCXE@121069,KOG1192@1,KOG1192@2759
EC2.4.1.17,2.4.1.47
Cds size540
COG Functional cat.CG
CAZyGT1
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462965.6281376-UTR-Ecto-sp13_S_contig1890:5062..51281681462965.6281376-UTR-Ecto-sp13_S_contig1890:5062..5128Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1890 5063..5128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462965.63903-CDS-Ecto-sp13_S_contig1890:5128..54121681462965.63903-CDS-Ecto-sp13_S_contig1890:5128..5412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1890 5129..5412 +
1681462965.6481547-CDS-Ecto-sp13_S_contig1890:7029..71731681462965.6481547-CDS-Ecto-sp13_S_contig1890:7029..7173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1890 7030..7173 +
1681462965.657971-CDS-Ecto-sp13_S_contig1890:7592..77041681462965.657971-CDS-Ecto-sp13_S_contig1890:7592..7704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1890 7593..7704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1890.5976.1prot_Ecto-sp13_S_contig1890.5976.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1890 5129..7704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1890.5976.1

>prot_Ecto-sp13_S_contig1890.5976.1 ID=prot_Ecto-sp13_S_contig1890.5976.1|Name=mRNA_Ecto-sp13_S_contig1890.5976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
MRTKIAHKDGGGKQQRREALPEVRAGLVLVKSKDVGRSRRPRRTWVLPVL
RVLALAASMLCLTPTGGMVTGMSKMDAWSAGSEHEQQHEDRRPTGVWGQR
QEHVVFVGVPEESAVLPLKALAQEMIGRGYRATLALPHGFQAWAEDIPGL
SFLSLKPTGGASNSNATTHSHGPPATAPQH
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mRNA from alignment at Ecto-sp13_S_contig1890:5063..7704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1890.5976.1 ID=mRNA_Ecto-sp13_S_contig1890.5976.1|Name=mRNA_Ecto-sp13_S_contig1890.5976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1890:5063..7704+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGACTGGCGCCTGGCTCCGCGTGATTAGCTCGAGGGCACAAGGGGCACT
TATCTCGTGATCCCTTATGCGCACAAAGATAGCCCACAAAGATGGTGGGG
GTAAGCAGCAGCGCCGAGAGGCCCTCCCCGAAGTCCGAGCGGGACTGGTC
CTGGTGAAGAGCAAAGATGTCGGTCGATCTCGACGTCCTCGCAGAACCTG
GGTGCTCCCAGTGCTGCGCGTGTTGGCCTTGGCGGCGTCAATGCTCTGCC
TCACTCCCACGGGTGGCATGGTCACAGGAATGTCGAAGATGGATGCTTGG
AGCGCAGGTTCCGAGCACGAGCAGCAGCACGAGGATCGTCGGCCGACCGG
GTGCGTAGCGCGTGCAGCAGCAGTAGGTTTTTTGCCCCGCGCGTGGTTGA
ATCCGTTTTTCCCGTCGTGGCTGTATCGTAACGCACTGACTTTTTTACGA
CACACGTTCCGTCGTTTGGCGGGTAGCCGAACAGGACCGTCGATAGATCG
TATCGGTGGCCCTCCCATGCGGCGTTACGGGTGTCTCTTACGTCAGGCTT
TCATGCTATAATGATTTTTTACGGTGCCGTGTGTTTTTTCGCCGCGTCCG
CCGAAACGAGAAGGTCGATCTACTTGTTGCCTCATACCGTCGCTGGGCAC
ACCGCGCTGTGTTTTTTGGTCCACCGCACTCCGGAATGCATGTACACCCA
GCAGAGCACCCGAGCAGAAACATGTGTAAAGTCGTAGCTTGCTGTTGTGA
CGTTTTAGACACACGTCTGTCTCAAGCTCTCGCCGGTAAAATGGTGCGGG
CGTTTGGGTTATCCGCAGCAGTATCAGATATGTAGGCAGCAAGAAGGAGA
TTGATTCCCAAGGAACCTTCCAGGTTTGGAAGTTTCGCTGGACGGTAACG
GGTATGTACCGATTACGAGCGGACCACTGCTCCCACAGCAGTAATGCAGG
TACACGGCTGCTGGGTGTGTGCGGTTGTGGAGTGGGTCGTAGACAGAGAA
CTACAAGATAAATCGTCGCTTATTGACTGGTGCAGCACGTTTCTGGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAGGGTTTGACCCTCTTCTCTTTTTGCTGCTGTCTCTGATCTCCCCACTG
CTGTAACGGTGTTGTCAACAAATGGATCGGAGAAAGCGTGAAAAGGCACA
GCAGTAGAGCGTAAGCTGGCACGTGTTGCACATATGCGGTCGTTCGTTGG
TTGCGTCGTACCTATCAATAGCACGTTCCGTACGAGATATGTAGATGCCT
TTGGTCCACATCGATTCACGGCATCGAAACAACGATGTTACCGGTTCAAC
ACCTGGATGGGTTTTGTGGGTTCGCATCGATTCGCCGCATCTAGGCAAAA
TGTTGATCATCTGCGACATTTAAATGGCTTTGGTTCACAGAGATTCACGG
CATCTAAGCAACTGCGGAGCATGTTTACATTTCGACATCTAGATGCCTTT
GGTTCACACCGATGCATGTAGACAACTTTATTTACTTTTACTTCGTTTCC
GACGGTATGATATGTAGCGTCTGGGGGCAGCGGCAGGAGCACGTGGTTTT
CGTCGGGGTCCCAGAGGAAAGCGCGGTGCTTCCGCTCAAGGCGCTTGCGC
AAGAGATGATTGGGAGAGGCTACCGTGCCACTCTCGCTCTGCCCCACGGA
TTCCAGGCCTGGTGAGTGCATTCGGGGGGGGGGGGGGGGGGGGGCGTGAT
GATGCGATGGTGGCTTTGAGGGTATGCATTCCGTCGGTGAGACGGCGTGT
CTTTTGGTCGAAGAGATTGCAAGAGTACCGTCATACCGCTGTGAAGCAAA
GTCTGCCCAAATCAAGCGTCGGTTGTCCGATCTCACTCTGTCCTTCTATG
TAGCACATCTATACAAGATCAAGGTGTGTCCAGTGCCCCCATTCCAACCT
TGTCATTCCATTCGATCACTCGCCGCTATTTTGGACCCCTTGCTCTTTCT
ATGTTGTGCTCTGCCTTTCTTCCTTGCTCTCTTTCCCCCTATGCCTCTCT
ATCGCTGGCCTATCTCCGTCGTCCCCCATATAATTTTGCCGTTTCACGTA
TCACTGACGCTGTTGTTCCGCTTCAATCAGGGCGGAAGACATCCCCGGTC
TTTCCTTCCTCTCCCTCAAGCCCACCGGCGGGGCCTCCAACTCCAACGCC
ACCACACACAGCCACGGGCCCCCCGCAACAGCTCCGCAACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1890:5063..7704+

>mRNA_Ecto-sp13_S_contig1890.5976.1 ID=mRNA_Ecto-sp13_S_contig1890.5976.1|Name=mRNA_Ecto-sp13_S_contig1890.5976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1890:5063..7704+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCACAAAGATAGCCCACAAAGATGGTGGGGGTAAGCAGCAGCGCCG
AGAGGCCCTCCCCGAAGTCCGAGCGGGACTGGTCCTGGTGAAGAGCAAAG
ATGTCGGTCGATCTCGACGTCCTCGCAGAACCTGGGTGCTCCCAGTGCTG
CGCGTGTTGGCCTTGGCGGCGTCAATGCTCTGCCTCACTCCCACGGGTGG
CATGGTCACAGGAATGTCGAAGATGGATGCTTGGAGCGCAGGTTCCGAGC
ACGAGCAGCAGCACGAGGATCGTCGGCCGACCGGCGTCTGGGGGCAGCGG
CAGGAGCACGTGGTTTTCGTCGGGGTCCCAGAGGAAAGCGCGGTGCTTCC
GCTCAAGGCGCTTGCGCAAGAGATGATTGGGAGAGGCTACCGTGCCACTC
TCGCTCTGCCCCACGGATTCCAGGCCTGGGCGGAAGACATCCCCGGTCTT
TCCTTCCTCTCCCTCAAGCCCACCGGCGGGGCCTCCAACTCCAACGCCAC
CACACACAGCCACGGGCCCCCCGCAACAGCTCCGCAACAC
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