mRNA_Ecto-sp13_S_contig189.5974.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig189.5974.1
Unique NamemRNA_Ecto-sp13_S_contig189.5974.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: D8LPM7_ECTSI (RPA_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM7_ECTSI)

HSP 1 Score: 400 bits (1028), Expect = 6.900e-137
Identity = 267/278 (96.04%), Postives = 271/278 (97.48%), Query Frame = 2 
Query:  167 MSSYGGFEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPGNXXXXXX---VYNNSSMDPEGSKGFTPIQQKVHDQFLGAD 991
            MSSYGGFEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   QQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVK+FHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPI+DMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPGN XXXXX   +YNNS+MDPEGSKGFTPIQQKVHDQFLGAD
Sbjct:    1 MSSYGGFEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKMFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPITDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPGNNXXXXXXXXMYNNSNMDPEGSKGFTPIQQKVHDQFLGAD 278
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BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A835YU42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU42_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.610e-38
Identity = 85/219 (38.81%), Postives = 125/219 (57.08%), Query Frame = 2 
Query:  347 NKEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLP----GKASTFGGAGVAQPMN--GVGSPGF--NGGSSQHGFTSPGNXXXXXXVYNNSSMDPEGSKGFTPIQQKVHDQF 979
            ++E+QS++ + IKQVLES+  N D   K+DG ++  ++LVGCI++++E STN  + +ED TGR+  K+F    E  +    E+R+RC+ G YV V G ++ W+D  H  A+ + P+ D +++T H LE IY HL NT GPL     G A   GGA  AQPM     GSPGF   GG++Q G             +N    + + S    P+ QK+ D F
Sbjct:   31 SREKQSIMPLTIKQVLESQHDNPDDKPKVDGVEIVHVRLVGCIIDINEHSTNAVFKIEDGTGRIDAKVFIEQDE--SQLQTERRSRCREGVYVAVVGQIKRWQDKLHVHAFDIRPLEDTNQITQHFLEAIYAHLHNTLGPLRKAPGGAAGGIGGAAGAQPMAVANYGSPGFARQGGAAQQG---------NYGAFNGGGGEMD-SNNLAPLHQKLLDIF 237
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BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A7S4D5U0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5U0_HETAK)

HSP 1 Score: 117 bits (292), Expect = 1.020e-27
Identity = 58/141 (41.13%), Postives = 90/141 (63.83%), Query Frame = 2 
Query:  350 KEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLP 772
            K+  ++    IKQ++++     D+  ++DG +V+Q+ LVGC++E  E STNT + +ED TGR++V ++ +D  GAN  A E+RA C   T VR  GN R ++  R+ +A+ + P+ D +EVT H LE IY H   T+GPLP
Sbjct:   54 KQDHTMKPCTIKQLMDATNDGSDT-FRVDGQEVTQVMLVGCVIEKVERSTNTSWIIEDGTGRMEVMMYQDDA-GANPVAEERRAACMQNTMVRAVGNFREFQGKRNVLAFDVQPLKDFNEVTRHFLEAIYAHCVATRGPLP 192
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BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A7S0HR69_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HR69_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 3.570e-24
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 2 
Query:  359 QSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAA-EKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGV 826
            QSL    IKQ+  +  +  D+G  +DG D+ Q+ +VG I   DE +TN +YTV+D T  + VK++    + A D AA EKRA+ + G  VRV G +R++   R  VA+ + P++D +E T H +E ++THL NTKG    + +   GAG+A    GV
Sbjct:   89 QSLAPCTIKQLKNAPASGGDNGFSVDGKDLHQVTIVGLITHADEQNTNLQYTVDDGTDSINVKMWI---DAATDEAAMEKRAQWREGAVVRVIGQMRAFNQVRSIVAFHIQPLTDFNEYTFHFIEVVHTHLRNTKGAAAEQGAPAAGAGMAGASMGV 242
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BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A7S3XCT1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XCT1_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 6.060e-23
Identity = 71/179 (39.66%), Postives = 100/179 (55.87%), Query Frame = 2 
Query:  350 KEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIF--HNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPG 880
            K  QSL++V +KQ+  +  A  D   +IDG DV  + +VG IV   E ST   Y ++D TG+++V+ +   +D E  N   AE     QVGTYVRV G +R+++  R+ VA+ + P+SD +EVT H LE +Y HL  T G    KA+   GA  A  M G G+ G        G T+PG
Sbjct:   77 KNTQSLVAVTVKQMFNAASATADDSFQIDGVDVHNVTIVGKIVSATEQSTCLIYKIDDGTGKVEVRFWIDSDDSELLNRNKAE----WQVGTYVRVTGQLRTFQGQRNIVAFQIRPVSDFNEVTYHFLEVVYAHLHRTNGT---KAT---GAPAAAGMPGSGAVGM-----VPGMTTPG 240
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BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A5D6XJQ9_9STRA (OB domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJQ9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.600e-21
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 2 
Query:  347 NKEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHN--DGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPM 817
            ++E Q+LL +  KQ+     A+ D   +IDG +V+ +KLVG +  V   STN  + ++D TG +  ++F +  DGE A+   A+ R     G YVRV GN+R++++     A+ +TPI D +EVT H L+ IY H +NTKGPL G A   GG+ +  P+
Sbjct:   47 SREAQTLLPITAKQLASRSTADDDV-IRIDGQEVTNVKLVGILSNVVPHSTNVNFQLDDGTGVVDGRLFLHAEDGEYADSEVAKLRD----GIYVRVVGNLRTFQEKVSLSAFAVTPIEDFNEVTHHFLDAIYVHCYNTKGPLGGGA---GGSVLGAPV 197
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BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A7S3AZ16_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZ16_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 4.450e-21
Identity = 63/162 (38.89%), Postives = 99/162 (61.11%), Query Frame = 2 
Query:  347 NKEQQSLLSVNIKQVLESEMA-NQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVG 829
            N+++QSL+   IKQ+  +  A N ++   IDGAD+ QI +VG I   DE +TN +Y+V+D T  + VK++  D E A++   E+RA+ + G  VRV G +R++ + +  VAY++ PI++ +E T H ++ ++THL  TKG   G     G  G   PMNG G
Sbjct:   67 NRDKQSLIPATIKQLKNAVPASNGEASFMIDGADLHQITIVGLITSADEQATNLQYSVDDGTDHIMVKMWI-DAE-ADESFQERRAQWKEGVVVRVIGQLRAFNNSKSVVAYSIQPITNFNEYTFHFIDVVHTHLKATKGKPVGVGVPRGIMG-GFPMNGGG 225
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BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A7S0DLE7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DLE7_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 5.460e-21
Identity = 55/140 (39.29%), Postives = 82/140 (58.57%), Query Frame = 2 
Query:  359 QSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGK 778
            QS+  +  KQ  E++ A   S   IDG  ++Q+++VG I+ VD  ST + Y ++D +G+L VK++ ND       A +    C+   YVRV G +R     R  VA+ + P+  M+E+TLH L+ I+THL NTKGPL  K
Sbjct:   41 QSMTPITCKQAREAK-AIDGSSFTIDGQTIAQVRVVGLILNVDHESTQSSYGIDDGSGQLTVKMYRNDD------AEDLDQHCREDIYVRVVGTMRELAGQRIVVAFQIQPLKSMNEITLHNLDVIHTHLRNTKGPLESK 173
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BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A507C8S6_9FUNG (RPA_C domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C8S6_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 2.670e-20
Identity = 56/147 (38.10%), Postives = 85/147 (57.82%), Query Frame = 2 
Query:  359 QSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNV--------RSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPG 775
            QSL  V+IKQ  E++    D   K+DGA+++ I +VG I+ ++E ST   YT++D TG++  + + +D +   D  A+KR +   G  V+VFG+V         +   D+    Y + PI + DE+TLH LE  Y HL+ TKGPL G
Sbjct:   78 QSLRPVSIKQFHEAKQVVPDGPYKLDGAEITNISMVGKIININEQSTTITYTIDDGTGQVIARKWLDDADNT-DANAQKRGQVSEGQDVKVFGSVGKPYASKNNATAQDKTMTVYAIRPIGNPDEITLHNLEAQYAHLYYTKGPLHG 223
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BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A2P6VBQ1_9CHLO (Replication A 32 kDa subunit n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VBQ1_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 3.640e-20
Identity = 55/157 (35.03%), Postives = 90/157 (57.32%), Query Frame = 2 
Query:  353 EQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNG 823
            ++  L ++ IKQ+ ++ +   D G  IDG +V+ I LVG ++E +E+      T++D TG+  VKI+ +D E   DR  ++RA  Q G YVRV G++ S+   +  +A+ + P++D +EVT H L+ I+ H   TKG   G  +     G A P +G
Sbjct:   42 QKHQLRALTIKQLADATLNRVDDGLTIDGREVTNITLVGKVLETNESGLTFGLTIDDGTGKAAVKIWISDDESETDR--QRRAEWQPGKYVRVHGHISSFGKSQEVIAFNVRPVADFNEVTYHFLQCIFQHAHLTKG---GAGAGGAAQGAAAPASG 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPM7_ECTSI6.900e-13796.04RPA_C domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835YU42_9STRA2.610e-3838.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D5U0_HETAK1.020e-2741.13Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0HR69_9EUKA3.570e-2439.49Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
A0A7S3XCT1_9CHLO6.060e-2339.66Hypothetical protein (Fragment) n=1 Tax=Picocystis... [more]
A0A5D6XJQ9_9STRA2.600e-2138.99OB domain-containing protein (Fragment) n=1 Tax=Py... [more]
A0A7S3AZ16_9EUKA4.450e-2138.89Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0DLE7_9EUKA5.460e-2139.29Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A507C8S6_9FUNG2.670e-2038.10RPA_C domain-containing protein n=1 Tax=Synchytriu... [more]
A0A2P6VBQ1_9CHLO3.640e-2035.03Replication A 32 kDa subunit n=1 Tax=Micractinium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig189contigEcto-sp13_S_contig189:28485..34074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score404.1
Seed ortholog evalue5.4e-110
Seed eggNOG ortholog2880.D8LPM7
Preferred nameRPA2
Model size991
KEGG rclassRC02795
KEGG koko:K02999,ko:K10739,ko:K10741
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko03030,ko03420,ko03430,ko03440,ko03460,map00230,map00240,map01100,map03020,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00182,M00288
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000075,GO:0000076,GO:0000077,GO:0000082,GO:0000228,GO:0000278,GO:0000280,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000781,GO:0000785,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005662,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006268,GO:0006269,GO:0006270,GO:0006278,GO:0006281,GO:0006282,GO:0006283,GO:0006284,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010468,GO:0010564,GO:0010569,GO:0010605,GO:0010629,GO:0010833,GO:0010948,GO:0016043,GO:0016070,GO:0016458,GO:0016567,GO:0016604,GO:0016605,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019902,GO:0019903,GO:0019985,GO:0022402,GO:0022414,GO:0022607,GO:0030491,GO:0030894,GO:0031323,GO:0031334,GO:0031570,GO:0031571,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032392,GO:0032446,GO:0032508,GO:0032774,GO:0032991,GO:0032993,GO:0033036,GO:0033260,GO:0033365,GO:0033554,GO:0033683,GO:0034502,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0036211,GO:0036297,GO:0042162,GO:0042276,GO:0042592,GO:0042769,GO:0043047,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0043565,GO:0043596,GO:0043601,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044786,GO:0044819,GO:0044843,GO:0045184,GO:0045786,GO:0045930,GO:0046483,GO:0047485,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051095,GO:0051096,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051606,GO:0051641,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070727,GO:0070987,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090734,GO:0097159,GO:0098505,GO:0098687,GO:0098847,GO:0140013,GO:1900034,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901976,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902295,GO:1902318,GO:1902806,GO:1902807,GO:1902969,GO:1902981,GO:1903046,GO:1903047,GO:2000001,GO:2000045,GO:2000134,GO:2000779,GO:2001020
Exons8
EggNOG free text desc.DNA metabolic process
EggNOG OGsCOG5235@1,KOG3108@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-06_004810.1
EC2.7.7.6
Cds size825
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig189.5974.1prot_Ecto-sp13_S_contig189.5974.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig189 28651..34074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462965.4409509-UTR-Ecto-sp13_S_contig189:28484..286501681462965.4409509-UTR-Ecto-sp13_S_contig189:28484..28650Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig189 28485..28650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462965.4545465-CDS-Ecto-sp13_S_contig189:28650..287051681462965.4545465-CDS-Ecto-sp13_S_contig189:28650..28705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig189 28651..28705 +
1681462965.463619-CDS-Ecto-sp13_S_contig189:30283..304501681462965.463619-CDS-Ecto-sp13_S_contig189:30283..30450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig189 30284..30450 +
1681462965.4731812-CDS-Ecto-sp13_S_contig189:30715..307811681462965.4731812-CDS-Ecto-sp13_S_contig189:30715..30781Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig189 30716..30781 +
1681462965.483247-CDS-Ecto-sp13_S_contig189:31160..312471681462965.483247-CDS-Ecto-sp13_S_contig189:31160..31247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig189 31161..31247 +
1681462965.4934669-CDS-Ecto-sp13_S_contig189:31824..319231681462965.4934669-CDS-Ecto-sp13_S_contig189:31824..31923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig189 31825..31923 +
1681462965.505516-CDS-Ecto-sp13_S_contig189:32551..327311681462965.505516-CDS-Ecto-sp13_S_contig189:32551..32731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig189 32552..32731 +
1681462965.514144-CDS-Ecto-sp13_S_contig189:33176..333201681462965.514144-CDS-Ecto-sp13_S_contig189:33176..33320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig189 33177..33320 +
1681462965.5227685-CDS-Ecto-sp13_S_contig189:34047..340741681462965.5227685-CDS-Ecto-sp13_S_contig189:34047..34074Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig189 34048..34074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig189.5974.1

>prot_Ecto-sp13_S_contig189.5974.1 ID=prot_Ecto-sp13_S_contig189.5974.1|Name=mRNA_Ecto-sp13_S_contig189.5974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MSSYGGFEYGGGGGGFDGGGGGGGGGFGSPGGGGGGFMGGGGTDSPAGGS
GGGSGGGGQKNKEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLV
GCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVG
TYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGP
LPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPGNNNNNNNVYNNS
SMDPEGSKGFTPIQQKVHDQFLGAD
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mRNA from alignment at Ecto-sp13_S_contig189:28485..34074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig189.5974.1 ID=mRNA_Ecto-sp13_S_contig189.5974.1|Name=mRNA_Ecto-sp13_S_contig189.5974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig189:28485..34074+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACCATCATCTGGTCGTTTGCGCGGTCGTGGTGTCCCCACCAAACCCAA
GCCGATACACACCCGCTCAACCCTCGTCTCTATAATTCTCTCGAACTGAT
TTGTTTGTGCGGTTCCTCTGTAGAGGCTAGAGCAGTTAGAATATCTTGTT
GGGCAACGCCGCCGGGATGTCTTCTTACGGTGGCTTCGAGTACGGCGGCG
GAGGCGGGGGCTTCGATGGAGGTGAGAAGATAAAGCTGCCGGTGTACCAG
CCGAGAGAGCGGTAGTGCTTGTCAAGCGAAACCTGTGTTTTCTTAACCCT
TGCGTTCACAGCGGTACGGTAAGCGCGCGGGCGCAGCAGGTTGTCTCTCT
CCTTTCCGGCGTGTGGCGGATCGTGTGTGATATTTTGAATTTGAATTTTG
TGTGTTTTAAAACCCCAGGGAGGGGCGGGGAGGGGTCGCTCACGACAGCA
GCAGTACCGGGGACGGTGTGTCGTCGTTGACACGGGGTTCGCAGGCAAGC
AACGCGTGCTGATGTTCGGCCACAGAATGAGGAGGCACCACCTCCGCTCG
CTCAAGTCTACTGAACAAGCGTTGGATTCACAAGCAGTGATTTGCACTCA
CACGCGTTGCGAGACATGCGGTGTTGCACTGTTGTACACACAGGACGATT
TTGTCCTGTTTTTGGCGCCAATGGGTGAACGGATCTCTGATGTACTTGCA
TACAGGTGCAGCAATACAGACCAACTTTCCCACGGTTTTTGGAGTTCGCC
GAGATTCTAGTCGTTAAATGGCTTCGTTATGTTCGATCGCGCGCTGCTGC
CAGGCCGAAACGTAGATCGAGAGCACAGGAACGCAAGTGTGTCGCCCCCC
TCCTCTCCCCTCCAGCGTCCGCCTCAGTCCCTCCGCGTTGCACACAAGGC
GGCAAAGGATGTGACATTGAACAAGGGGTGAAATCTGGTTTTTGTGTACC
GGGAAGGAACAATGGAAGCGTTACGAAACGCGTCGGGACAGCGTATGCGT
ATGCCAAGAACGAAATATTAGTTTGTCGCCGGCCTCAGTAACTCGTCGTT
AGAGCTCAGAGCAAGCAGGGCAGCGAGGAAACGGATTACAAAGGCAAGAT
GAATCGGTTGACGAAAATGACGTGGGGCTACGGCGAGAGTGACAAGAGTC
AAGAGTCTCAGAGCTCATCAGCGAGTAAACGTCTGTTAACGCTACAAATG
GAAATGGAAGTGATTTGATTCAAACGTTTTTTCTCCTACATACACTATTG
CGTAGCAGCGACCGAGTAAGGCTTGGTACCGAGCAAGAGAGGCGTTTTGT
ACGCCGAGGCAAGGCTTTGGACCGGCGCCAGCGGTTTGTACGCCGAGGCA
AGGCTTTGGACCAGCGCCAGCGGTATCGTGTGCGTGGTGCCAAAAGTTAT
CGGATTTTTGACGCCGAGTGTCTCTGAGGTAGCGTCAACAGCGAGACTTG
CCAGTCAGTACATGCATCGTGCATGTTCAGGCAGGGAACGCAACGAGTGT
ACCGCGAGCGTGTAAGTTTATTTGGATTTTTCGCCTTGTACAGTAGGTGC
GCGGAATTCACACACAAGACAAGGGTTTTTGTCCACCCGGCGTCCATTTT
CCGGTGGACCGGGGCCGAATCAAAGAAGGCCGAATGAGGAAAGGGGAATT
GCAACGTATGGATCATGGATGACACCACGGTCGTTTGTGTTCAACAGGAG
TGTCAGAGTTACCGCTGTCGGCATCCCTTCTTGTCGTGACCAATAATGAC
GTCGCGTATCGTTTGTCTGTTACTCTTATGTCGACGTATTTGTGTGAAGG
CGGGGGCGGCGGTGGCGGCGGCTTCGGGTCTCCCGGCGGGGGAGGCGGGG
GCTTCATGGGCGGGGGGGGCACGGACAGCCCGGCGGGCGGGAGCGGGGGC
GGCAGCGGCGGCGGGGGGCAGAAAAACAAGGAGCAGCAGTCCCTCCTATC
TGTCAACATCAAACAGGTGCATTTCGTGTGTAGGTGTCATTCAATTCATT
CAATGCTTCGACCGTTTACCCAATACGGTGTTGGTGTCGACTTGTGTCTA
CATGCGGTGTATTGAATCCGTGCATCGACCGCGTGCTACACGGTTGTGTC
CAGAGAAACGCCTGCCTCAGGTGTCGACGCCGCCACGGACCCGAACCGCT
ACCAACGCAAGTCGTTATGTCCCATGTCTTTGTGCCCATTTCATTTTTTT
TTTTTTGTCTGTTCGTTGACTTGTTCTGAAGGTGCTTGAGTCGGAGATGG
CCAACCAGGACTCGGGCGCCAAAATCGACGGGGCCGACGTGTCTCAGGTG
GGGGGGGGGGGGGGGGTCGACGCGGACGGCACAGGGCCTCCTACATAAGT
ACACCTGGTTATGTCATCATAATGCTGTCCGTGCAGTTTTTGTCTTGCTC
GCCGACCTGCTGTAAATCCCTTTGCCGCGTGATACCGGTTACCGACCCGC
TACAAATATACCATGCCGCTAAGGTCGGCTTAATGTTATTCATGCACACC
CCCTCTCTCGGGATTCCGGAAACAAGCCACGCCCATTGTCCTCTAACTTC
CCATGCGCTACATCCGCTTTTTCTGCTGCTGGTGCCGCCGCCGGGTTGCC
ACGCGCTGCTGAACCGAAACCTGAACGGGACGGGACGAATCGAAACCGGG
ACGGGATGAATGAACCTGGACGGAAGATCAAGCTGGTGGGATGTATCGTG
GAGGTGGACGAGGCCTCGACCAACACGGAGTACACGGTCGAGGACACTAC
CGGCCGCCTCAAGGTATCATATCATAGCACAGAGCTATTTTATTCTTTTT
GTGCCTTCCTTGTGATTGTGGTGGTTTCTTGTTCCCCCTCCCAACAAACA
GAGCACTCGATGCACTGCTGGACGGGCGGGCTACGTAGTCCTTTTTGGAT
GCCGCGGGAAGTGGACCTGTCGAACGTGTCCTCGCGCGCCCGCGGTTTTG
GTGGATGTTACTGTTTGGGGCGACATGTGGCCCCGCAGATTGCTGCCATG
TAGTGGCATACTTCCATGAGCGCTTCGGCTGCGAGGCGCTTGCGTGCTTT
TTGAGGCGACGGTGATTGTTCCGCTCCGCGGAAGCAACACAACAGCAACG
CTGACGCACTTTTCCCCCCAATGACACGTTTCCAGTGTGCCGCATGCGTG
CCGACTTGAAGGCATACAGGATGCATCACCGAAACAAATCAAGGCGCTGA
TGGGTTCTTCTTGTTGGCATTTAGTTGTTTGTGCTCCCTTGTTTTTAGAA
AGTACACATAACCTCACAGAAAGACCACCTGTTCGAGACAAAATGTTTTG
TTTTCGGTCTTTTGCTGCTTGCCGCATGGCGTCGTCCCAGGTTAAGATCT
TTCACAACGACGGGGAAGGGGCGAACGACCGCGCCGCGGAGAAGCGCGCT
CGCTGCCAGGTCGGGACTTACGTGCGGGTCTTCGGCAACGTGAGTCCAAG
CTGCTGCCGCTCTCTTTGTGTATCTGTCTGTCTGTCTGTCTCTGTCTTTC
TGCCTGTCTTTCTCTCTGTCTCGCTACCTCTCTTAAACTTCCCCGCTCGT
CTGGCGTGTTGGACCAAGGACCGTGCCCGAAGTGATCTTAGCTGCATTCG
ATACATGGTTATCGTATACTTAAGCCTAGTCTTGAGCCCATCCAATACAT
GCAGGCAGTGTTGGTGTTGTTGACACCTTGAAGATGATGGATGTGAGCCT
CTCGCGTACCATTCGCTTTGTCCGGTTTTCTTCACGCTATTTATTTGGAA
GTCGCCGATTTTATTGTCATGGTCGCGTGCTGTCTGTTCGCCTTTCTTGA
ATCGTCCCTATCTCGCTGTCGGTTGGTGTGTCGCGCACGTGCGCATACAC
GGCCACCAAAATAACAGCTAAATCCGCAGAATCGACAACAACATCGACAA
CGATACAACTACCAGTACGATGACAACGACCAACGATACAACAACAACAA
CAACGAGATGCAACCATGATACAACACCAACGGTAATGACAACGTGACAA
GAATAATGTGACCACAACAATGAACGTACGAACGAACGAACGGGCGGGCG
GGCGGGCGGGCGGGCAGGTGAGATCCTGGAAGGATGACCGCCACTCGGTC
GCGTACACGATGACCCCGATCTCCGACATGGACGAGGTGACGCTGCACGC
CCTCGAGACGATCTACACACACCTCTTCAACACCAAGGGCCCCCTGCCGG
GCAAGGCTTCCACGTTTGGGGGTGCGGGCGTGGCTCAGCCAATGAACGTG
AGTTATTCGTATCAGTTGTATCAGTATTTCTTGGGGGATGGATGCAAGGT
GCGCCTCGGGAGTGGGCTCATGAGAGCGATCGTTGTAGTGTCATCAAGGC
GTGGTTCAAGATGTGATCAAGGCACTTGCTGATGTGAATCAACTTGCCAG
CCGCCACCGGTGACGCTTCCCAAGCTCTCGAAGATGACACAAGCTGGCGT
GTTTTTGACTCGAAGAGCCCGGCGAACATCAATGAACCCAAAGTATTGTT
TTCAAATCTGTACTGTCTTGTTTGGTGGAGGTTTTCTCGTGGGGGAGGGG
GAGGGAGTGATGGACTTGGGATACAGCAGGGCAAGACCCTAGACGGTGGC
TCGCTGATTAGGGTCCCTTTTCCTCCGCGTCCTTTTTTTTTGTTTCTTAT
GAAACTGCCGTGCGTTTTCGTGGTTCGGCTTGTGTTTCGCAGGGCGTTGG
CTCCCCCGGGTTCAACGGCGGCAGCAGTCAGCACGGCTTCACCAGCCCAG
GGAACAACAACAACAACAACAACGTGTACAACAACAGCAGCATGGATCCG
GAGGGCTCGAAAGGCTTCACTCCGATCCAACAAAAGGTGTGTTGCTAACT
ATTTTTCGTCGTTTTTTCTCTGGTCGTTCCTCCTTGTTGAACATGGTCCA
CGAAACTCAACCCTCAACCCTTCTATTTTGATGTAGATATTGTCTTCAAG
ATCCACCCCGCAAGTAAGCACATTACCTTTCCCGTTCATGCAAGAAAGTG
GCCCATTGCACCATTGGCGGTTTGTACCGGTGCCGCAGCTTGATGATCTC
CTACTAGATTCAAACCCCCTGCTCCTTGCATTGGGCACTACACAGTTTGT
TGGTGGTCGTCTGCCGTTATCTGCATCTTGTGTGCCTCACGCGCGCGTGT
ACATGTTTGTCTTTCTTTCTGGGGATGAGCACCCAACCGCCTGCACCGCC
TAGCCAAAGGAAGCACTATCGGATCGCTATTATAGAAGTGAATGAAAAGA
TGGGTCCAGGTTTCTTCTGGAGTAGAAATCACGATCACCCATTGATTTTG
CTTGTGTGTTTTTGTGACGTTGGTTGCCTGACGGGCAGTAGAAAAAACAG
AAGCGGGCAAGGGGGAAGGAGGAAAAGAGACAGAATGACGAGGACCAAAG
GTGAATCAGTCAACCTTGTGCGTTCTTGTGACGTTGGTTGCTTGACGTGT
AATGAAACAAAAGGATGCGCGGGGACAGGGGGTAAGGAGGAAAATTGACA
TGGTGACGAGAAACAAACAAACGTGAATCGACCAATCAATGAATCAATCA
ATGGATGGTGCAGGTTCACGACCAATTCTTGGGAGCGGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig189:28485..34074+

>mRNA_Ecto-sp13_S_contig189.5974.1 ID=mRNA_Ecto-sp13_S_contig189.5974.1|Name=mRNA_Ecto-sp13_S_contig189.5974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig189:28485..34074+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTCTTACGGTGGCTTCGAGTACGGCGGCGGAGGCGGGGGCTTCGA
TGGAGGCGGGGGCGGCGGTGGCGGCGGCTTCGGGTCTCCCGGCGGGGGAG
GCGGGGGCTTCATGGGCGGGGGGGGCACGGACAGCCCGGCGGGCGGGAGC
GGGGGCGGCAGCGGCGGCGGGGGGCAGAAAAACAAGGAGCAGCAGTCCCT
CCTATCTGTCAACATCAAACAGGTGCTTGAGTCGGAGATGGCCAACCAGG
ACTCGGGCGCCAAAATCGACGGGGCCGACGTGTCTCAGATCAAGCTGGTG
GGATGTATCGTGGAGGTGGACGAGGCCTCGACCAACACGGAGTACACGGT
CGAGGACACTACCGGCCGCCTCAAGGTTAAGATCTTTCACAACGACGGGG
AAGGGGCGAACGACCGCGCCGCGGAGAAGCGCGCTCGCTGCCAGGTCGGG
ACTTACGTGCGGGTCTTCGGCAACGTGAGATCCTGGAAGGATGACCGCCA
CTCGGTCGCGTACACGATGACCCCGATCTCCGACATGGACGAGGTGACGC
TGCACGCCCTCGAGACGATCTACACACACCTCTTCAACACCAAGGGCCCC
CTGCCGGGCAAGGCTTCCACGTTTGGGGGTGCGGGCGTGGCTCAGCCAAT
GAACGGCGTTGGCTCCCCCGGGTTCAACGGCGGCAGCAGTCAGCACGGCT
TCACCAGCCCAGGGAACAACAACAACAACAACAACGTGTACAACAACAGC
AGCATGGATCCGGAGGGCTCGAAAGGCTTCACTCCGATCCAACAAAAGGT
TCACGACCAATTCTTGGGAGCGGAT
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