prot_Ecto-sp13_S_contig189.5974.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig189.5974.1
Unique Nameprot_Ecto-sp13_S_contig189.5974.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length275
Homology
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: D8LPM7_ECTSI (RPA_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM7_ECTSI)

HSP 1 Score: 400 bits (1027), Expect = 1.180e-137
Identity = 267/278 (96.04%), Postives = 271/278 (97.48%), Query Frame = 0
Query:    1 MSSYGGFEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPGNXXXXXX---VYNNSSMDPEGSKGFTPIQQKVHDQFLGAD 275
            MSSYGGFEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   QQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVK+FHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPI+DMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPGN XXXXX   +YNNS+MDPEGSKGFTPIQQKVHDQFLGAD
Sbjct:    1 MSSYGGFEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKMFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPITDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPGNNXXXXXXXXMYNNSNMDPEGSKGFTPIQQKVHDQFLGAD 278          
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A835YU42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU42_9STRA)

HSP 1 Score: 147 bits (370), Expect = 5.710e-39
Identity = 85/219 (38.81%), Postives = 125/219 (57.08%), Query Frame = 0
Query:   61 NKEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLP----GKASTFGGAGVAQPMN--GVGSPGF--NGGSSQHGFTSPGNXXXXXXVYNNSSMDPEGSKGFTPIQQKVHDQF 271
            ++E+QS++ + IKQVLES+  N D   K+DG ++  ++LVGCI++++E STN  + +ED TGR+  K+F    E  +    E+R+RC+ G YV V G ++ W+D  H  A+ + P+ D +++T H LE IY HL NT GPL     G A   GGA  AQPM     GSPGF   GG++Q G             +N    + + S    P+ QK+ D F
Sbjct:   31 SREKQSIMPLTIKQVLESQHDNPDDKPKVDGVEIVHVRLVGCIIDINEHSTNAVFKIEDGTGRIDAKVFIEQDE--SQLQTERRSRCREGVYVAVVGQIKRWQDKLHVHAFDIRPLEDTNQITQHFLEAIYAHLHNTLGPLRKAPGGAAGGIGGAAGAQPMAVANYGSPGFARQGGAAQQG---------NYGAFNGGGGEMD-SNNLAPLHQKLLDIF 237          
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A7S4D5U0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5U0_HETAK)

HSP 1 Score: 117 bits (292), Expect = 2.860e-28
Identity = 58/141 (41.13%), Postives = 90/141 (63.83%), Query Frame = 0
Query:   62 KEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLP 202
            K+  ++    IKQ++++     D+  ++DG +V+Q+ LVGC++E  E STNT + +ED TGR++V ++ +D  GAN  A E+RA C   T VR  GN R ++  R+ +A+ + P+ D +EVT H LE IY H   T+GPLP
Sbjct:   54 KQDHTMKPCTIKQLMDATNDGSDT-FRVDGQEVTQVMLVGCVIEKVERSTNTSWIIEDGTGRMEVMMYQDDA-GANPVAEERRAACMQNTMVRAVGNFREFQGKRNVLAFDVQPLKDFNEVTRHFLEAIYAHCVATRGPLP 192          
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A7S0HR69_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HR69_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 1.060e-24
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 0
Query:   65 QSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAA-EKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGV 220
            QSL    IKQ+  +  +  D+G  +DG D+ Q+ +VG I   DE +TN +YTV+D T  + VK++    + A D AA EKRA+ + G  VRV G +R++   R  VA+ + P++D +E T H +E ++THL NTKG    + +   GAG+A    GV
Sbjct:   89 QSLAPCTIKQLKNAPASGGDNGFSVDGKDLHQVTIVGLITHADEQNTNLQYTVDDGTDSINVKMWI---DAATDEAAMEKRAQWREGAVVRVIGQMRAFNQVRSIVAFHIQPLTDFNEYTFHFIEVVHTHLRNTKGAAAEQGAPAAGAGMAGASMGV 242          
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A7S3XCT1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XCT1_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 1.890e-23
Identity = 71/179 (39.66%), Postives = 100/179 (55.87%), Query Frame = 0
Query:   62 KEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIF--HNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPG 238
            K  QSL++V +KQ+  +  A  D   +IDG DV  + +VG IV   E ST   Y ++D TG+++V+ +   +D E  N   AE     QVGTYVRV G +R+++  R+ VA+ + P+SD +EVT H LE +Y HL  T G    KA+   GA  A  M G G+ G        G T+PG
Sbjct:   77 KNTQSLVAVTVKQMFNAASATADDSFQIDGVDVHNVTIVGKIVSATEQSTCLIYKIDDGTGKVEVRFWIDSDDSELLNRNKAE----WQVGTYVRVTGQLRTFQGQRNIVAFQIRPVSDFNEVTYHFLEVVYAHLHRTNGT---KAT---GAPAAAGMPGSGAVGM-----VPGMTTPG 240          
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A5D6XJQ9_9STRA (OB domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJQ9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.680e-22
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 0
Query:   61 NKEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHN--DGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPM 217
            ++E Q+LL +  KQ+     A+ D   +IDG +V+ +KLVG +  V   STN  + ++D TG +  ++F +  DGE A+   A+ R     G YVRV GN+R++++     A+ +TPI D +EVT H L+ IY H +NTKGPL G A   GG+ +  P+
Sbjct:   47 SREAQTLLPITAKQLASRSTADDDV-IRIDGQEVTNVKLVGILSNVVPHSTNVNFQLDDGTGVVDGRLFLHAEDGEYADSEVAKLRD----GIYVRVVGNLRTFQEKVSLSAFAVTPIEDFNEVTHHFLDAIYVHCYNTKGPLGGGA---GGSVLGAPV 197          
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A7S3AZ16_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZ16_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 1.470e-21
Identity = 63/162 (38.89%), Postives = 99/162 (61.11%), Query Frame = 0
Query:   61 NKEQQSLLSVNIKQVLESEMA-NQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVG 221
            N+++QSL+   IKQ+  +  A N ++   IDGAD+ QI +VG I   DE +TN +Y+V+D T  + VK++  D E A++   E+RA+ + G  VRV G +R++ + +  VAY++ PI++ +E T H ++ ++THL  TKG   G     G  G   PMNG G
Sbjct:   67 NRDKQSLIPATIKQLKNAVPASNGEASFMIDGADLHQITIVGLITSADEQATNLQYSVDDGTDHIMVKMWI-DAE-ADESFQERRAQWKEGVVVRVIGQLRAFNNSKSVVAYSIQPITNFNEYTFHFIDVVHTHLKATKGKPVGVGVPRGIMG-GFPMNGGG 225          
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A7S0DLE7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DLE7_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 1.830e-21
Identity = 55/140 (39.29%), Postives = 82/140 (58.57%), Query Frame = 0
Query:   65 QSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGK 204
            QS+  +  KQ  E++ A   S   IDG  ++Q+++VG I+ VD  ST + Y ++D +G+L VK++ ND       A +    C+   YVRV G +R     R  VA+ + P+  M+E+TLH L+ I+THL NTKGPL  K
Sbjct:   41 QSMTPITCKQAREAK-AIDGSSFTIDGQTIAQVRVVGLILNVDHESTQSSYGIDDGSGQLTVKMYRNDD------AEDLDQHCREDIYVRVVGTMRELAGQRIVVAFQIQPLKSMNEITLHNLDVIHTHLRNTKGPLESK 173          
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A507C8S6_9FUNG (RPA_C domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C8S6_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 8.940e-21
Identity = 56/147 (38.10%), Postives = 85/147 (57.82%), Query Frame = 0
Query:   65 QSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNV--------RSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPG 203
            QSL  V+IKQ  E++    D   K+DGA+++ I +VG I+ ++E ST   YT++D TG++  + + +D +   D  A+KR +   G  V+VFG+V         +   D+    Y + PI + DE+TLH LE  Y HL+ TKGPL G
Sbjct:   78 QSLRPVSIKQFHEAKQVVPDGPYKLDGAEITNISMVGKIININEQSTTITYTIDDGTGQVIARKWLDDADNT-DANAQKRGQVSEGQDVKVFGSVGKPYASKNNATAQDKTMTVYAIRPIGNPDEITLHNLEAQYAHLYYTKGPLHG 223          
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Match: A0A2P6VBQ1_9CHLO (Replication A 32 kDa subunit n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VBQ1_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 1.250e-20
Identity = 55/157 (35.03%), Postives = 90/157 (57.32%), Query Frame = 0
Query:   63 EQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNG 219
            ++  L ++ IKQ+ ++ +   D G  IDG +V+ I LVG ++E +E+      T++D TG+  VKI+ +D E   DR  ++RA  Q G YVRV G++ S+   +  +A+ + P++D +EVT H L+ I+ H   TKG   G  +     G A P +G
Sbjct:   42 QKHQLRALTIKQLADATLNRVDDGLTIDGREVTNITLVGKVLETNESGLTFGLTIDDGTGKAAVKIWISDDESETDR--QRRAEWQPGKYVRVHGHISSFGKSQEVIAFNVRPVADFNEVTYHFLQCIFQHAHLTKG---GAGAGGAAQGAAAPASG 193          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig189.5974.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPM7_ECTSI1.180e-13796.04RPA_C domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835YU42_9STRA5.710e-3938.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D5U0_HETAK2.860e-2841.13Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0HR69_9EUKA1.060e-2439.49Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
A0A7S3XCT1_9CHLO1.890e-2339.66Hypothetical protein (Fragment) n=1 Tax=Picocystis... [more]
A0A5D6XJQ9_9STRA8.680e-2238.99OB domain-containing protein (Fragment) n=1 Tax=Py... [more]
A0A7S3AZ16_9EUKA1.470e-2138.89Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0DLE7_9EUKA1.830e-2139.29Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A507C8S6_9FUNG8.940e-2138.10RPA_C domain-containing protein n=1 Tax=Synchytriu... [more]
A0A2P6VBQ1_9CHLO1.250e-2035.03Replication A 32 kDa subunit n=1 Tax=Micractinium ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-typePFAMPF01336tRNA_anti-codoncoord: 98..185
e-value: 3.0E-6
score: 27.1
NoneNo IPR availableGENE3D2.40.50.140coord: 59..198
e-value: 5.3E-39
score: 134.9
IPR040260Replication factor A protein-likePANTHERPTHR13989REPLICATION PROTEIN A-RELATEDcoord: 32..231
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 68..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig189contigEcto-sp13_S_contig189:28651..34074 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig189.5974.1mRNA_Ecto-sp13_S_contig189.5974.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig189 28485..34074 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig189.5974.1 ID=prot_Ecto-sp13_S_contig189.5974.1|Name=mRNA_Ecto-sp13_S_contig189.5974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MSSYGGFEYGGGGGGFDGGGGGGGGGFGSPGGGGGGFMGGGGTDSPAGGS
GGGSGGGGQKNKEQQSLLSVNIKQVLESEMANQDSGAKIDGADVSQIKLV
GCIVEVDEASTNTEYTVEDTTGRLKVKIFHNDGEGANDRAAEKRARCQVG
TYVRVFGNVRSWKDDRHSVAYTMTPISDMDEVTLHALETIYTHLFNTKGP
LPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPGNNNNNNNVYNNS
SMDPEGSKGFTPIQQKVHDQFLGAD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004365NA-bd_OB_tRNA
IPR040260RFA2-like
IPR012340NA-bd_OB-fold