mRNA_Ecto-sp13_S_contig1889.5969.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1889.5969.1
Unique NamemRNA_Ecto-sp13_S_contig1889.5969.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1889.5969.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 1.760e-98
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 1 
Query:   28 GLDEDEEDTPERNPGPDAAVLRAIKLRLEQWRKDNTKSVEQENLARIARYGVAGGGDSRFGGQLSSVLGLQMPSAAAGTASKYGAQNIRRFLAHVHAISIAPPWVAALLTAMRVPTKNAVQVKKVIQEAIEVNKGLSTPKSVLEAMARSISPDIYKSFTARYTKDIALE 534
            GLDEDEEDTPERNPGPDAAV+RAIKLRLEQWRKDNTKSVEQENLARIARYGVAGGGDSRFGGQLSSVLGLQMPSAAAGTASKYGAQNIRRFLAHVHAISIAPPWVAALLTAMRVPTKNAVQVKKVIQEAIEVNKGLSTPK VLEAMARSISPDIYKSFTARYTKDIALE
Sbjct:  540 GLDEDEEDTPERNPGPDAAVVRAIKLRLEQWRKDNTKSVEQENLARIARYGVAGGGDSRFGGQLSSVLGLQMPSAAAGTASKYGAQNIRRFLAHVHAISIAPPWVAALLTAMRVPTKNAVQVKKVIQEAIEVNKGLSTPKPVLEAMARSISPDIYKSFTARYTKDIALE 708
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BLAST of mRNA_Ecto-sp13_S_contig1889.5969.1 vs. uniprot
Match: A0A6H5J6B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6B9_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 1.750e-51
Identity = 96/99 (96.97%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:    1 LGGEAAAAAGLDEDEEDTPERNPGPDAAVLRAIKLRLEQWRKDNTKSVEQENLARIARYGVAGGGDSRFGGQLSSVLGLQMPSAAAGTASKYGAQNIRR 297
            LGGEAA  AGLDEDEEDTPERNPGPDAAVLRAIKLRLEQWRKDNTK VEQENLARIARYGVAGGGDSRFGGQLSSVLGLQMPSAAAGTASKYGAQNIRR
Sbjct:  695 LGGEAAXXAGLDEDEEDTPERNPGPDAAVLRAIKLRLEQWRKDNTKRVEQENLARIARYGVAGGGDSRFGGQLSSVLGLQMPSAAAGTASKYGAQNIRR 793
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1889.5969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5K5_ECTSI1.760e-9898.82Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J6B9_9PHAE1.750e-5196.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1889contigEcto-sp13_S_contig1889:12995..15337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size537
Hectar predicted targeting categoryother localisation
Exons4
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462964.941445-CDS-Ecto-sp13_S_contig1889:12994..131441681462964.941445-CDS-Ecto-sp13_S_contig1889:12994..13144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1889 12995..13144 +
1681462964.951989-CDS-Ecto-sp13_S_contig1889:13791..139371681462964.951989-CDS-Ecto-sp13_S_contig1889:13791..13937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1889 13792..13937 +
1681462964.9608672-CDS-Ecto-sp13_S_contig1889:14651..147631681462964.9608672-CDS-Ecto-sp13_S_contig1889:14651..14763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1889 14652..14763 +
1681462964.9693918-CDS-Ecto-sp13_S_contig1889:15210..153361681462964.9693918-CDS-Ecto-sp13_S_contig1889:15210..15336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1889 15211..15336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1889.5969.1prot_Ecto-sp13_S_contig1889.5969.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1889 12995..15336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1889.5969.1

>prot_Ecto-sp13_S_contig1889.5969.1 ID=prot_Ecto-sp13_S_contig1889.5969.1|Name=mRNA_Ecto-sp13_S_contig1889.5969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
LGGEAAAAAGLDEDEEDTPERNPGPDAAVLRAIKLRLEQWRKDNTKSVEQ
ENLARIARYGVAGGGDSRFGGQLSSVLGLQMPSAAAGTASKYGAQNIRRF
LAHVHAISIAPPWVAALLTAMRVPTKNAVQVKKVIQEAIEVNKGLSTPKS
VLEAMARSISPDIYKSFTARYTKDIALE
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mRNA from alignment at Ecto-sp13_S_contig1889:12995..15337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1889.5969.1 ID=mRNA_Ecto-sp13_S_contig1889.5969.1|Name=mRNA_Ecto-sp13_S_contig1889.5969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2343bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1889:12995..15337+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGGGGGAGAGGCGGCGGCGGCGGCGGGGCTGGACGAGGACGAGGAGGA
CACGCCGGAGAGGAACCCCGGGCCGGACGCGGCGGTCCTGAGGGCCATCA
AGCTGCGACTGGAGCAGTGGCGCAAGGATAACACAAAGAGCGTGGAGCAG
GTGAACATGGCGGCGTTTGTCTTGCACCGGGCGCTTCAAGTAACAGATCG
CTCGGTTCCAATTTTGGGCGTAGTTTGGGTGTAAGGTGGCTGCGTGTGGA
TGTTACCGCCCGCCCTTTGCGTGCCTCCGTACGCAAGAGGCGGGAGTTGT
AATGATCACGGCGGCGTGTGCCCGTCGGTGGAAGGACGATTTGTTTTTAC
CCGAGCAATGACGCCAGTCGTAGCAGAAATGGGCCGGAAATAAGTGTCAG
GATGCTGTCTGGTGTGGTGTCATGGTTGTCTGCGGCGTTCGTTTTTGCGG
TGCCGTTGTACCCTCACTCATACGCGTTTGACCACATCTGAGTCTCAAGC
GGTTCACTACCCCCGCCACTCTCGCCCCATACGGTGATCTGCAAAGGGCA
GGAGGTGGTGAACACAGTCAGAAACAAACAAAACATGACAGGTTCGTTAA
GAGCCGCCGCTTGCTGTTGTCGATAGTGTTCATGAAAGGACCAAAACGGT
GCCTTTATCCCTAGTCCAAAGATCAACAGAAGCAGCGATTGCCCCCCCGC
CGCCACACACGCGTCTGGAATTCTCCGTCTACAATCGTTCGCTCTTTCAC
AGAGTTTTATTTATTCACCTCAAATTCACGCGATCATTTTCCTGCAGGAA
AACCTGGCCAGGATTGCTCGGTACGGCGTGGCGGGAGGCGGCGACTCGAG
GTTTGGAGGGCAGCTGTCCAGCGTGCTCGGGTTGCAGATGCCTAGCGCTG
CCGCCGGTACAGCGTCGAAGTACGGAGCTCAGAACATCCGGAGGTGAGAG
GGGCGTTTTTGGTGGCAATGTATTTTCATACACGATCGTACTGGGTAGAT
TTGGTGGGTGGGTTCACATGCAGACGTGAGAGGGGCGTTTTTTGGCAATG
TATGCAGGAACGATCGGGTGGGTAGATTCGGTGGGAGGGTGTGGATGGTC
AGGCGATGGTCAGGCGCCGTGAGGGTCGCAAACCAAGCTTTTTTGTTTGT
TGTGACCCCCCGTGGTTCGTGGCACCGTGGTGAGATGGAGGTTGTTGCTT
GCTAGATATCTGTTTGCTGCTGCAGTTGCGAGACTGTGGGCAATTGGTCG
ATGCACCTCGGATGCAGTTCTGCTACTCACTCCACCCGAGCAGCAGAGGA
TGACGGGTGGGCGTCAGTACAATGAGGATGAGGAGGCTTTTGGCCCCCCC
CCCCTACTGTTACGATTTTTCGAAGCTCTCTAGGTGGAGCCACAGATGCT
GCTGTTGTCGGCGTTGTTAAGTGGTCGACGCCGGACACCCTTCATCAAGC
GCGTACAGGCGAAGCGAGCTAGCGCACCACTGGCGTTGGCGTTCCAAACC
TCGTGTACGCCAATGACACACAAACCTCTCTCTGTTTCTCTCTGTCTCTT
GTTTCTTTCTCTCGCTCTCATGCTCTCCCTCTGCACTTTGTCACCCGCGC
ATGACCATCACCCCCTCTCCCCCCCCCAACGAAACACGCCCAACCGACCA
ATGATAGGTTCTTGGCCCACGTACACGCCATTTCCATCGCCCCCCCCTGG
GTAGCGGCCTTGCTGACGGCCATGCGCGTGCCGACCAAAAACGCCGTCCA
GGTCAAGAAGGTCATCCAGGCGAGTGCGGTGTGGTGGCCTTTATCGTTTT
ATCGCTTTTGGAAAATATACACCGAATCACAGGAAGAGACTACCCCTACG
AGGTATATGCAAACCAGTCTTTCATTCTGGACATCGACCGCGCTAACCGG
CTCACCCGTGGGAGTCAGTGTGACACGAGCGGGAAAATGCTTGTGTTAGC
CATCATAGTTCGCACGGTGGCGGGGGTTAGGTTTGTGTGTTTGTCTTTGT
CTGTAGTCCTACAGACCTTGCCGTCCTTCCCGCTCGAAGGTCCCAGTAAG
GCTGCCCCCCAGCCAGCTTTCGCCGCCCATGTGAACCTTCGCGACAAACC
CCTACTTCTTTGCTCGCCCCGCCACTGACGGGGGCGTCCGATGTATAAAT
TTCTTCTTCTTTTTTTCTCTTGTTCTCGTTTAACATGTTTCCTTCTCTCC
TTTTGCTTGTTCGCAGGAAGCGATAGAGGTGAACAAGGGGCTGTCCACCC
CGAAGTCTGTCCTAGAGGCCATGGCCAGGTCCATCAGCCCAGACATCTAC
AAGAGCTTCACGGCTCGATATACGAAGGACATCGCTCTCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1889:12995..15337+

>mRNA_Ecto-sp13_S_contig1889.5969.1 ID=mRNA_Ecto-sp13_S_contig1889.5969.1|Name=mRNA_Ecto-sp13_S_contig1889.5969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1889:12995..15337+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGGGGGAGAGGCGGCGGCGGCGGCGGGGCTGGACGAGGACGAGGAGGA
CACGCCGGAGAGGAACCCCGGGCCGGACGCGGCGGTCCTGAGGGCCATCA
AGCTGCGACTGGAGCAGTGGCGCAAGGATAACACAAAGAGCGTGGAGCAG
GAAAACCTGGCCAGGATTGCTCGGTACGGCGTGGCGGGAGGCGGCGACTC
GAGGTTTGGAGGGCAGCTGTCCAGCGTGCTCGGGTTGCAGATGCCTAGCG
CTGCCGCCGGTACAGCGTCGAAGTACGGAGCTCAGAACATCCGGAGGTTC
TTGGCCCACGTACACGCCATTTCCATCGCCCCCCCCTGGGTAGCGGCCTT
GCTGACGGCCATGCGCGTGCCGACCAAAAACGCCGTCCAGGTCAAGAAGG
TCATCCAGGAAGCGATAGAGGTGAACAAGGGGCTGTCCACCCCGAAGTCT
GTCCTAGAGGCCATGGCCAGGTCCATCAGCCCAGACATCTACAAGAGCTT
CACGGCTCGATATACGAAGGACATCGCTCTCGAG
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