mRNA_Ecto-sp13_S_contig18887.5964.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18887.5964.1
Unique NamemRNA_Ecto-sp13_S_contig18887.5964.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18887.5964.1 vs. uniprot
Match: A0A6H5K2R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R8_9PHAE)

HSP 1 Score: 606 bits (1563), Expect = 7.550e-215
Identity = 315/338 (93.20%), Postives = 323/338 (95.56%), Query Frame = 1 
Query:    1 QVVGGLNTDSQRDSLAQALGLSHRAILPRLYQARRWVLRSMLGSIFLADHPRPESLLMWVMACYEELPPLQ---DAGGETEEPASFVDDASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDPAGDGGKSTSVPCLYEISVDTAQKRAYASNCFTFLSSRCAQDDGQHKDGVLAEQVTSFILELSDLAQTDVVSLEVLCLVLLEPWRQATCTAKHQAEDSACDSQQESLGTSLNGAVLKQASELVEGFLDDARLWSLDEWLLGEISHRYESFARAYVEKLTRSREELVRRH-LTPADWSGLCLRKEDVQSRLGVLCSRSERLKRLVFRTIALN 1002
            QVVGGLNTDSQRDSLAQALGLSHRAILPRLYQARRWVLRSMLGS FLADHP PESLLMWVMACYEELPPLQ   DAGGET++PASFV+DASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRD AGDGGKSTSVPCLYE+SVDTAQKRAYASNCFTFLSSRCAQDDGQHK GVLAEQVTSFILELS+LAQTD+VSLE+LCLVLLEPWRQATCTAKHQAE SACDSQQESLGTSLN AVLKQAS LVEGFL DARLWSLDEWLLGEISHRYESFARAYVEKLTRSREELVRR  LTPADW+GLC RKEDVQSRLGVLCSRSERLKRLVFRTIA N
Sbjct:  115 QVVGGLNTDSQRDSLAQALGLSHRAILPRLYQARRWVLRSMLGSTFLADHPHPESLLMWVMACYEELPPLQAHQDAGGETDQPASFVNDASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDAAGDGGKSTSVPCLYEMSVDTAQKRAYASNCFTFLSSRCAQDDGQHKHGVLAEQVTSFILELSELAQTDIVSLEILCLVLLEPWRQATCTAKHQAEGSACDSQQESLGTSLNAAVLKQASALVEGFLGDARLWSLDEWLLGEISHRYESFARAYVEKLTRSREELVRRECLTPADWTGLCSRKEDVQSRLGVLCSRSERLKRLVFRTIASN 452
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BLAST of mRNA_Ecto-sp13_S_contig18887.5964.1 vs. uniprot
Match: D7FVC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC5_ECTSI)

HSP 1 Score: 583 bits (1503), Expect = 8.090e-206
Identity = 307/338 (90.83%), Postives = 319/338 (94.38%), Query Frame = 1 
Query:    1 QVVGGLNTDSQRDSLAQALGLSHRAILPRLYQARRWVLRSMLGSIFLADHPRPESLLMWVMACYEELPPLQ---DAGGETEEPASFVDDASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDPAGDGGKSTSVPCLYEISVDTAQKRAYASNCFTFLSSRCAQDDGQHKDGVLAEQVTSFILELSDLAQTDVVSLEVLCLVLLEPWRQATCTAKHQAEDSACDSQQESLGTSLNGAVLKQASELVEGFLDDARLWSLDEWLLGEISHRYESFARAYVEKLTRSREELVRR-HLTPADWSGLCLRKEDVQSRLGVLCSRSERLKRLVFRTIALN 1002
            QVVGGLNTDSQRDSLA+ALGLSHRAILPRLYQARRWVLRSMLGS FL DHPRPESL+MW+MACYEELPPLQ   DAGGET++ ASFVDDASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRD AG GGKST VPCLYE+SVDTAQKRAYASNCFTFLSSRCAQ DGQHK GVLAEQVTSFILELS+LAQTD+VSLE+LCLVLLEPWRQAT TAKHQAEDSACDSQQESLGTSLNGA+LKQ    VEGFLDDARLWSLDEWLLGEISHR+ESFARAYVEKLTRSREELVRR +LT AD SGLCLRKEDVQSRLGVLCSRSERLKRLVFRTIALN
Sbjct:  113 QVVGGLNTDSQRDSLARALGLSHRAILPRLYQARRWVLRSMLGSTFLVDHPRPESLVMWIMACYEELPPLQAHQDAGGETDQSASFVDDASAVVKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDAAGGGGKSTRVPCLYEMSVDTAQKRAYASNCFTFLSSRCAQGDGQHKHGVLAEQVTSFILELSELAQTDIVSLEILCLVLLEPWRQATRTAKHQAEDSACDSQQESLGTSLNGALLKQ----VEGFLDDARLWSLDEWLLGEISHRHESFARAYVEKLTRSREELVRREYLTSADSSGLCLRKEDVQSRLGVLCSRSERLKRLVFRTIALN 446
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18887.5964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2R8_9PHAE7.550e-21593.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVC5_ECTSI8.090e-20690.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18887contigEcto-sp13_S_contig18887:1589..3405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1254
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_000590.1
Cds size885
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18887.5964.1prot_Ecto-sp13_S_contig18887.5964.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18887 1838..3107 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462964.6439197-UTR-Ecto-sp13_S_contig18887:1588..18371681462964.6439197-UTR-Ecto-sp13_S_contig18887:1588..1837Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18887 1589..1837 -
1681462964.6896741-UTR-Ecto-sp13_S_contig18887:3107..31301681462964.6896741-UTR-Ecto-sp13_S_contig18887:3107..3130Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18887 3108..3130 -
1681462964.705295-UTR-Ecto-sp13_S_contig18887:3308..34051681462964.705295-UTR-Ecto-sp13_S_contig18887:3308..3405Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18887 3309..3405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462964.6543503-CDS-Ecto-sp13_S_contig18887:1837..21041681462964.6543503-CDS-Ecto-sp13_S_contig18887:1837..2104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18887 1838..2104 -
1681462964.6639743-CDS-Ecto-sp13_S_contig18887:2249..27731681462964.6639743-CDS-Ecto-sp13_S_contig18887:2249..2773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18887 2250..2773 -
1681462964.6736307-CDS-Ecto-sp13_S_contig18887:3013..31071681462964.6736307-CDS-Ecto-sp13_S_contig18887:3013..3107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18887 3014..3107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18887.5964.1

>prot_Ecto-sp13_S_contig18887.5964.1 ID=prot_Ecto-sp13_S_contig18887.5964.1|Name=mRNA_Ecto-sp13_S_contig18887.5964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
MLGSIFLADHPRPESLLMWVMACYEELPPLQDAGGETEEPASFVDDASAV
VKSRGDVGVVSHAYSALLLCGGGSKLASSISTRDPAGDGGKSTSVPCLYE
ISVDTAQKRAYASNCFTFLSSRCAQDDGQHKDGVLAEQVTSFILELSDLA
QTDVVSLEVLCLVLLEPWRQATCTAKHQAEDSACDSQQESLGTSLNGAVL
KQASELVEGFLDDARLWSLDEWLLGEISHRYESFARAYVEKLTRSREELV
RRHLTPADWSGLCLRKEDVQSRLGVLCSRSERLKRLVFRTIALN*
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mRNA from alignment at Ecto-sp13_S_contig18887:1589..3405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18887.5964.1 ID=mRNA_Ecto-sp13_S_contig18887.5964.1|Name=mRNA_Ecto-sp13_S_contig18887.5964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1817bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18887:1589..3405- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTCGGGGGGTTGAATACCGACTCGCAGCGAGATAGTCTCGCCCA
GGCCTTGGGTCTTTCGCACCGTGCTATTCTGCCTCGTCTCTACCAGGGTG
AGTAAATGTCTTGTCGCTGCGTTGGACACACCGCACCGTAGTCTGTTCGA
CTCAAGTTTCAGTCCGCGTTGCCTTTGATACCGTCAGCTGCGGAATGCGA
TTCTCCTCCGGGGTGTTGTGGATGAAGCGAACAAGCAAAGATCTTACACG
TTTTTACCCCCCACAACTTGCGCAGCGCGTAGATGGGTGCTTAGGTCCAT
GCTCGGCAGTATCTTCTTGGCCGACCACCCTCGCCCCGAATCTTTGCTGA
TGTGGGTCATGGCCTGCTACGAAGAACTCCCACCGCTCCAAGGTAGGCAG
GCCGGGTACACCCCGAAAGCGTGTTTGCTGTCTTCTAACTTGAGACCGAA
AGTCATCCCCGTAGATAACGTTTGATGTCGTCTAGGTTGGCTGCGTTTTG
CGGCAATTTTGTCGTTATTTCACAGCTGCTGTCAGAATCATCATGTACTC
AGTATTTAGTCCCCGGTAAGCGCATACTGACTAAAATATCAATGTTGTCT
TCCTTTACAACACATGCCAACTGCCCACGAAGACGCCGGAGGCGAGACTG
AAGAGCCAGCGTCGTTTGTCGACGATGCCAGCGCTGTTGTGAAATCTCGA
GGAGACGTAGGTGTTGTGTCGCATGCCTACTCGGCTCTCTTACTCTGCGG
AGGCGGGAGCAAGTTGGCGTCTTCAATCAGCACCAGAGATCCCGCTGGAG
ACGGTGGCAAAAGTACGAGTGTGCCATGCTTGTATGAGATCAGTGTAGAC
ACCGCACAGAAGCGAGCGTATGCGAGCAACTGCTTCACATTTTTGTCATC
GAGGTGCGCACAGGATGATGGGCAACACAAGGATGGTGTGCTTGCCGAAC
AAGTCACCAGCTTCATCCTGGAGCTCTCTGATCTTGCTCAAACGGACGTT
GTGTCTCTCGAAGTTTTGTGTCTAGTGCTGCTAGAGCCGTGGAGACAGGC
CACTTGCACTGCAAAACATCAAGCAGAAGACTCGGCATGCGATTCACAAC
AAGAATCGCTGGGCACCTCACTGAACGGCGCGGTTCTGAAGCAGGCAAGT
GAACTAGTACCCCCGATGTGAGCCACGCCGACTGGGTTCTGGGGTATGGA
TGGACCCCTACCACAAAAATGTGTTCGTTGATGGACAGTGAAATCCGCAA
AAGCCATTTATTTTTCAAAGACAATATTTTGGCCTTGTGTCATGTCTGCA
GGTTGAGGGTTTCCTGGACGATGCTAGGCTGTGGTCCTTGGACGAATGGC
TTCTTGGGGAGATATCACACCGCTACGAGTCGTTCGCCAGAGCCTACGTG
GAAAAGCTGACGCGATCGCGGGAGGAGCTGGTTCGCCGACATTTAACGCC
TGCCGACTGGAGTGGACTCTGCTTAAGAAAAGAGGACGTGCAGAGCAGGC
TGGGCGTTTTGTGTTCAAGAAGCGAGCGATTAAAGCGCCTCGTGTTCCGG
ACGATAGCTTTGAATTGAAATATACATCTGGACGCGTAGTGATCCCGCAC
CCGAGCGCACGCCATGTACGCACTGGCCCATTTTTCGGCTGTAGGCGGTA
ATGAGGGACAACCCGAGGGGGCAGGTCGTGAAACAGCGAAGAGAGAAACA
TCTCTCGGCGTATGCGGGAAAGGGGGGCTGCGGGTTCCATGTCATTTGGA
CCATACTTGAAAGCGTTGGCAACTAGAAAATTAGGTCATGCGGGCGACGC
AAGTTGAATTCGGCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18887:1589..3405-

>mRNA_Ecto-sp13_S_contig18887.5964.1 ID=mRNA_Ecto-sp13_S_contig18887.5964.1|Name=mRNA_Ecto-sp13_S_contig18887.5964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18887:1589..3405- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGGCAGTATCTTCTTGGCCGACCACCCTCGCCCCGAATCTTTGCT
GATGTGGGTCATGGCCTGCTACGAAGAACTCCCACCGCTCCAAGACGCCG
GAGGCGAGACTGAAGAGCCAGCGTCGTTTGTCGACGATGCCAGCGCTGTT
GTGAAATCTCGAGGAGACGTAGGTGTTGTGTCGCATGCCTACTCGGCTCT
CTTACTCTGCGGAGGCGGGAGCAAGTTGGCGTCTTCAATCAGCACCAGAG
ATCCCGCTGGAGACGGTGGCAAAAGTACGAGTGTGCCATGCTTGTATGAG
ATCAGTGTAGACACCGCACAGAAGCGAGCGTATGCGAGCAACTGCTTCAC
ATTTTTGTCATCGAGGTGCGCACAGGATGATGGGCAACACAAGGATGGTG
TGCTTGCCGAACAAGTCACCAGCTTCATCCTGGAGCTCTCTGATCTTGCT
CAAACGGACGTTGTGTCTCTCGAAGTTTTGTGTCTAGTGCTGCTAGAGCC
GTGGAGACAGGCCACTTGCACTGCAAAACATCAAGCAGAAGACTCGGCAT
GCGATTCACAACAAGAATCGCTGGGCACCTCACTGAACGGCGCGGTTCTG
AAGCAGGCAAGTGAACTAGTTGAGGGTTTCCTGGACGATGCTAGGCTGTG
GTCCTTGGACGAATGGCTTCTTGGGGAGATATCACACCGCTACGAGTCGT
TCGCCAGAGCCTACGTGGAAAAGCTGACGCGATCGCGGGAGGAGCTGGTT
CGCCGACATTTAACGCCTGCCGACTGGAGTGGACTCTGCTTAAGAAAAGA
GGACGTGCAGAGCAGGCTGGGCGTTTTGTGTTCAAGAAGCGAGCGATTAA
AGCGCCTCGTGTTCCGGACGATAGCTTTGAATTGA
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