mRNA_Ecto-sp13_S_contig18883.5960.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18883.5960.1
Unique NamemRNA_Ecto-sp13_S_contig18883.5960.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18883.5960.1 vs. uniprot
Match: A0A6H5L3D5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3D5_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 3.760e-115
Identity = 190/206 (92.23%), Postives = 193/206 (93.69%), Query Frame = 1 
Query:    7 QILAKGLSGLNSSRHGHGGASLNTSRHGGGAGXXXXXXXGAVDTRPAIVRAATSLNESRHKLTQGLRRTVSRSHLSDADQGQMQSPVLIYHSTVVEEGSNILILKGTLRRRVGTATLSSLREEKAVTIIRDVGGPVEFTEGSVVFIMPAVLMARASTAHQMLMREIEQRHRDLTAAAAADGMRPPKLESGIVSIDAGGSPGPRLGK 624
            +ILAKGLSGLNSSRHGHGGASLNTSRH GG G  XXXXXGAVDTRPAIVRAATSLNESRHKLTQGLRRTVSRSHLSDADQGQMQSP  I HS VVEEGS ILILKGTLRRRVGTATLSSL+EEKAVTIIRDVGGPVEFTEGSVVFIMPAVLMARASTAHQMLMREIEQRHRDLTAAAAADGMR  KLESGIVS+DAG SPGPRL K
Sbjct:   29 RILAKGLSGLNSSRHGHGGASLNTSRHAGGTGGGXXXXXGAVDTRPAIVRAATSLNESRHKLTQGLRRTVSRSHLSDADQGQMQSPGPICHSMVVEEGSYILILKGTLRRRVGTATLSSLKEEKAVTIIRDVGGPVEFTEGSVVFIMPAVLMARASTAHQMLMREIEQRHRDLTAAAAADGMRSLKLESGIVSMDAGASPGPRLAK 234
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BLAST of mRNA_Ecto-sp13_S_contig18883.5960.1 vs. uniprot
Match: D8LKR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR0_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 2.280e-103
Identity = 183/210 (87.14%), Postives = 188/210 (89.52%), Query Frame = 1 
Query:    7 QILAKGLSGLNSSRHGHGGASLNTSRHGGGAGXXXXXXXGA----VDTRPAIVRAATSLNESRHKLTQGLRRTVSRSHLSDADQGQMQSPVLIYHSTVVEEGSNILILKGTLRRRVGTATLSSLREEKAVTIIRDVGGPVEFTEGSVVFIMPAVLMARASTAHQMLMREIEQRHRDLTAAAAADGMRPPKLESGIVSIDAGGSPGPRLGK 624
            +ILAKGL GLNSSRHGHGGASLNTSRHGG   XXXXXXX      VDTRPAIVRAATSLNESRHKLTQGLRRTVSR  LSDADQGQM SPV I HS VVEEGSNILILKGTLRRRVGTATLSSL+EEKAVTIIR VGGPVEFTEGSVVFIMPAVLMARAS AHQMLMREIEQRHRDLTAAAA DG+RP KLESG+VS+DAG SPGPRL K
Sbjct:   29 RILAKGLGGLNSSRHGHGGASLNTSRHGGXXXXXXXXXXXXXXXXVDTRPAIVRAATSLNESRHKLTQGLRRTVSRGQLSDADQGQMHSPVPICHSMVVEEGSNILILKGTLRRRVGTATLSSLKEEKAVTIIRGVGGPVEFTEGSVVFIMPAVLMARASAAHQMLMREIEQRHRDLTAAAA-DGIRPAKLESGVVSVDAGASPGPRLAK 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18883.5960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3D5_9PHAE3.760e-11592.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKR0_ECTSI2.280e-10387.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18883contigEcto-sp13_S_contig18883:814..3065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size624
Hectar predicted targeting categoryother localisation
Exons3
Cds size624
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462964.4075773-CDS-Ecto-sp13_S_contig18883:813..10841681462964.4075773-CDS-Ecto-sp13_S_contig18883:813..1084Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18883 814..1084 -
1681462964.4282885-CDS-Ecto-sp13_S_contig18883:2241..23931681462964.4282885-CDS-Ecto-sp13_S_contig18883:2241..2393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18883 2242..2393 -
1681462964.4384134-CDS-Ecto-sp13_S_contig18883:2864..30651681462964.4384134-CDS-Ecto-sp13_S_contig18883:2864..3065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18883 2865..3065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18883.5960.1prot_Ecto-sp13_S_contig18883.5960.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18883 814..3065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18883.5960.1

>prot_Ecto-sp13_S_contig18883.5960.1 ID=prot_Ecto-sp13_S_contig18883.5960.1|Name=mRNA_Ecto-sp13_S_contig18883.5960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
SSQILAKGLSGLNSSRHGHGGASLNTSRHGGGAGGGGGGGSGAVDTRPAI
VRAATSLNESRHKLTQGLRRTVSRSHLSDADQGQMQSPVLIYHSTVVEEG
SNILILKGTLRRRVGTATLSSLREEKAVTIIRDVGGPVEFTEGSVVFIMP
AVLMARASTAHQMLMREIEQRHRDLTAAAAADGMRPPKLESGIVSIDAGG
SPGPRLGK
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mRNA from alignment at Ecto-sp13_S_contig18883:814..3065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18883.5960.1 ID=mRNA_Ecto-sp13_S_contig18883.5960.1|Name=mRNA_Ecto-sp13_S_contig18883.5960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18883:814..3065- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTTCGCAGATTTTGGCCAAGGGGCTCAGCGGGCTCAACTCCAGCCGACA
CGGTCACGGCGGTGCCTCCCTCAACACGAGTCGTCACGGCGGCGGCGCCG
GCGGTGGCGGTGGGGGCGGGAGCGGGGCAGTGGACACCCGTCCGGCGATC
GTACGCGCGGCAACGTCGCTGAACGAGAGCCGCCACAAGCTGACACAGGG
GGTAAGCGACTCGAGCCTTGCTGTTGGTAAGGGGTATGCTGGTACGTTGG
GGGGCAAACGCAACACACGTGCGTGCACTGCTGGGGTGTTTTCGTCTAGC
GTACGTTGTGACGAACCCTGCCCTTTGTTGAAGTCGAGCCTTGAGAGTGC
GGTTTGTTTGTCTGGATGATGTGAAAGTATTTCTTTTGGTCCACCCTTTG
CCCTCGAAAAAAGAAACGGGCAGCAATCTAGCAAAACAAAGACAACGCAT
GAGCTGCGAGGAAAATGCCATGTGCTAGCAGTCGCAACGTGATTTACGCA
GACGATGACAGCGCGTATCGTGCACGAATCCAATGACTATCCCGATCCCC
CCCCACACCCTCCAGCTTCGACTCGAACACTGGCCAAACAAAAAGTTATT
TTGTTTTCATTCACAAAATCCGCAACCTGTTACGCCCCATGTGAGCCCCT
CCCCCTTCTTTGTTTTTCGCAGCTGCGGCGCACCGTCAGCCGCAGCCATC
TGTCCGACGCCGACCAAGGGCAGATGCAGTCTCCGGTCCTGATCTATCAC
AGCACGGTCGTGGAGGAAGGGTCTAATATCCTCATCCTCAAGGGAACTCT
ACGCCGAAGGGTTGGGACAGCCACGTGAGTACAGCAGTATGCTTGACTTC
GTGTTTGTGTGTGAGATTGTGCTTTTATTATTGGCGTCGACCGCACGCTG
AGCGGCTGACAAGTAAAGAGACGTCAGTCTCAGTGCTGTTGAAAAACACA
AAAATGCTTCTAAAGGCCACAATCTGGGACCTTGTGACCGAGCGCCATGG
GGGATTATGTGTGTATAGCGTGTGTTATTTTTGAAAGACGGACCATGACG
TCAGTTGCAACATCCGTGACAAACTCGCAAGTCTGTGCGCACGCGGTGTG
GCTTCCTTGCGTGATGTCGTGTGTTGTTATGAATCAATCCACCCTTGATT
TGGTCTTGGTAGTATAGTAAGATAAAATAGTGCTCCTCTTAGAACATTAT
TTGTCGTTGGCATCGGACAAGAAGACGTTGTTTCCTGAGGATGCTTGCAA
GGCGAAGCGACAAAACAGAGCAAGCGACAAGCAGGACACCCCTCTTGGAG
GAGACTTACTGTAGTGTGAAGATCGCTTGACACGAGGCTTGCGTGTTCTT
TTTTTTTTGTTATTTTCTTGCCTCAATGTATGACCCAACGAATCCATCTC
TATCTAAGAAAATAGTCTGAGAAAGATCAGCAATAAATCCGTAGCGTCAG
CGAAAGTTCTGTTTTCCCGCGATCTCCCGAGCAGCGTACAGTGGTGTATC
CCCCATGGGTAACAGAGTCGACAAGATAGTTTGGTACTTATGCAGGGAAG
GTGAAGAAGTAAGGTGTTGGGTAGTTGGTTTGTTTTTTTTTCGGGGAGGG
GGAGGGGGGGGTGTCAACATACTACTGCTGTCATGGGCGCCCCCACCAGG
TTCCGGTCGTCCAAGGGAGCAAAGGTCATCGGGGTGACTTGACTGACCAT
CATCGTAAATGAGGAAGAGAAGAAGAAGCTGAAGCATGGGTATAAATGAA
CTCGCCGTGGTCCTCAAACTACATGTAGATGAACCGCTCTGTGCATGTCC
ACGTGCTGCATAGATATGAAACGACTTCGTAATGATTCACCTGTTCTACC
CCGCTGAGTGCATCGTAGTGCTACCACGGCAAATCTACTACTTTCTGCTG
CTGCTGCCGCTGCCGCTGCCGCTGCCCCTGCCCCTGCCGTTGTACCCGAA
ACGCCACCACTTGCTGGCCGTGTTGTTGCAGCTTGTCCTCGCTGAGGGAG
GAGAAGGCGGTCACCATCATTCGCGACGTGGGCGGCCCCGTGGAGTTTAC
GGAGGGGTCGGTGGTGTTTATCATGCCGGCCGTCCTCATGGCAAGGGCCT
CCACGGCCCACCAGATGCTGATGCGCGAGATCGAGCAGCGACACCGCGAC
CTGACGGCGGCGGCCGCAGCGGATGGAATGAGACCGCCCAAGCTAGAGTC
GGGGATCGTGTCCATAGACGCCGGGGGGTCTCCTGGGCCGAGATTGGGGA
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18883:814..3065-

>mRNA_Ecto-sp13_S_contig18883.5960.1 ID=mRNA_Ecto-sp13_S_contig18883.5960.1|Name=mRNA_Ecto-sp13_S_contig18883.5960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18883:814..3065- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTTCGCAGATTTTGGCCAAGGGGCTCAGCGGGCTCAACTCCAGCCGACA
CGGTCACGGCGGTGCCTCCCTCAACACGAGTCGTCACGGCGGCGGCGCCG
GCGGTGGCGGTGGGGGCGGGAGCGGGGCAGTGGACACCCGTCCGGCGATC
GTACGCGCGGCAACGTCGCTGAACGAGAGCCGCCACAAGCTGACACAGGG
GCTGCGGCGCACCGTCAGCCGCAGCCATCTGTCCGACGCCGACCAAGGGC
AGATGCAGTCTCCGGTCCTGATCTATCACAGCACGGTCGTGGAGGAAGGG
TCTAATATCCTCATCCTCAAGGGAACTCTACGCCGAAGGGTTGGGACAGC
CACCTTGTCCTCGCTGAGGGAGGAGAAGGCGGTCACCATCATTCGCGACG
TGGGCGGCCCCGTGGAGTTTACGGAGGGGTCGGTGGTGTTTATCATGCCG
GCCGTCCTCATGGCAAGGGCCTCCACGGCCCACCAGATGCTGATGCGCGA
GATCGAGCAGCGACACCGCGACCTGACGGCGGCGGCCGCAGCGGATGGAA
TGAGACCGCCCAAGCTAGAGTCGGGGATCGTGTCCATAGACGCCGGGGGG
TCTCCTGGGCCGAGATTGGGGAAG
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