prot_Ecto-sp13_S_contig18873.5952.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18873.5952.1
Unique Nameprot_Ecto-sp13_S_contig18873.5952.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length79
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18873.5952.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 4.600e-28
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 0 
Query:    1 MELQNELAVRGRAAERLLAAERLGQGIARWCTNRKASAFYCIMSGVTIVAAESDVRERTRRALREAGEG 69
            MELQNELAVR RAAERLLAAERLGQG+ RWCTNR+ASAFY I+SGVT+VAAESDVRERTRRALREAGEG
Sbjct: 1384 MELQNELAVRERAAERLLAAERLGQGLTRWCTNRRASAFYRIVSGVTMVAAESDVRERTRRALREAGEG 1452
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18873.5952.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMX2_ECTSI4.600e-2889.86Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18873contigEcto-sp13_S_contig18873:19..495 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18873.5952.1mRNA_Ecto-sp13_S_contig18873.5952.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18873 19..512 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18873.5952.1 ID=prot_Ecto-sp13_S_contig18873.5952.1|Name=mRNA_Ecto-sp13_S_contig18873.5952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MELQNELAVRGRAAERLLAAERLGQGIARWCTNRKASAFYCIMSGVTIVA
AESDVRERTRRALREAGEGARRAQNAAVE
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