mRNA_Ecto-sp13_S_contig18873.5952.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18873.5952.1
Unique NamemRNA_Ecto-sp13_S_contig18873.5952.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18873.5952.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 2.870e-30
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 3 
Query:    3 VQRQLMELQNELAVRGRAAERLLAAERLGQGIARWCTNRKASAFYCIMSGVTIVAAESDVRERTRRALREAGEG 224
            VQR+LMELQNELAVR RAAERLLAAERLGQG+ RWCTNR+ASAFY I+SGVT+VAAESDVRERTRRALREAGEG
Sbjct: 1379 VQRRLMELQNELAVRERAAERLLAAERLGQGLTRWCTNRRASAFYRIVSGVTMVAAESDVRERTRRALREAGEG 1452
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18873.5952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMX2_ECTSI2.870e-3089.19Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18873contigEcto-sp13_S_contig18873:19..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score118.6
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog2880.D8LMX2
Model size255
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28KYD@1,2QTF4@2759
Cds size237
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.7126124-CDS-Ecto-sp13_S_contig18873:18..2301681462963.7126124-CDS-Ecto-sp13_S_contig18873:18..230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18873 19..230 -
1681462963.7245097-CDS-Ecto-sp13_S_contig18873:470..4951681462963.7245097-CDS-Ecto-sp13_S_contig18873:470..495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18873 471..495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.7353208-UTR-Ecto-sp13_S_contig18873:495..5121681462963.7353208-UTR-Ecto-sp13_S_contig18873:495..512Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18873 496..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18873.5952.1prot_Ecto-sp13_S_contig18873.5952.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18873 19..495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18873.5952.1

>prot_Ecto-sp13_S_contig18873.5952.1 ID=prot_Ecto-sp13_S_contig18873.5952.1|Name=mRNA_Ecto-sp13_S_contig18873.5952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MELQNELAVRGRAAERLLAAERLGQGIARWCTNRKASAFYCIMSGVTIVA
AESDVRERTRRALREAGEGARRAQNAAVE
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mRNA from alignment at Ecto-sp13_S_contig18873:19..512-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18873.5952.1 ID=mRNA_Ecto-sp13_S_contig18873.5952.1|Name=mRNA_Ecto-sp13_S_contig18873.5952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=494bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18873:19..512- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCAGCGTCAGCTCATGGAGCTCCAGAACGAACTCGCAGGTGGGGGA
GGTGTACAGCGGGCGGAATAAGCTCGACGGACCCAGTTAGCTGTTCGTGA
GCCTCGTTCCGTTCGCGTCGCCCGAAGACCGTCGAAACGATCTCAAAGCA
GGGTTGTCTCACGTGACCCCAGTACAGCTCTATCTTGAAGGGGATAGGTT
GATTTTTAAGTCAAAGGAGTAGGGTAAAAATAACCTAAGCGTCTTTCCCC
CTCCCCCCCATGGTGAATCTGGCAACAAATAGTGAGAGGACGCGCTGCCG
AACGCCTTCTTGCCGCCGAGCGCCTGGGGCAAGGGATAGCGCGGTGGTGC
ACCAACAGGAAAGCGTCCGCCTTCTACTGCATCATGAGCGGGGTCACCAT
AGTGGCGGCTGAGAGTGACGTCAGAGAACGCACCCGAAGAGCTCTCAGGG
AGGCCGGGGAGGGAGCGCGTAGGGCGCAGAACGCGGCGGTCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18873:19..512-

>mRNA_Ecto-sp13_S_contig18873.5952.1 ID=mRNA_Ecto-sp13_S_contig18873.5952.1|Name=mRNA_Ecto-sp13_S_contig18873.5952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18873:19..512- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCTCCAGAACGAACTCGCAGTGAGAGGACGCGCTGCCGAACGCCT
TCTTGCCGCCGAGCGCCTGGGGCAAGGGATAGCGCGGTGGTGCACCAACA
GGAAAGCGTCCGCCTTCTACTGCATCATGAGCGGGGTCACCATAGTGGCG
GCTGAGAGTGACGTCAGAGAACGCACCCGAAGAGCTCTCAGGGAGGCCGG
GGAGGGAGCGCGTAGGGCGCAGAACGCGGCGGTCGAG
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