mRNA_Ecto-sp13_S_contig1887.5951.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1887.5951.1
Unique NamemRNA_Ecto-sp13_S_contig1887.5951.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1887.5951.1 vs. uniprot
Match: A0A6H5KLC2_9PHAE (FHA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC2_9PHAE)

HSP 1 Score: 472 bits (1214), Expect = 1.730e-166
Identity = 254/281 (90.39%), Postives = 260/281 (92.53%), Query Frame = 1 
Query:    1 MALLQSMELEQQQGSGIAADTTSLQEPGAALAQQXXXXXXXXXXXXXXDSPIRRADTPCPAALRRRRQQQDGSIGRFILLPDRAETSRRFIPLEPGTTTVVGRCKKSGIRDHHVSRRHVEITVPEEGDEGFAQGHCRIKYIGRNCRVVLVGGILLKAGQEVPAAPGTRVVLNYNNKGLPRYSYTLLPSNNLPVTTPRTARCSVGMGAAGAGDGRPWRGGPVSSPQRLGGSDVEMGSGRKQPFHGDAHLHAYNRPSRYSAIPSKQQRPRPGGRFRKEAQEKV 843
            MALLQSM+LEQQ GS IAA TTS QE GAAL   XXXXXXXXXXXX  DSPIRRA TPCPAALR RRQQQDGSIGR ILLPDRAETSRRFIPLEPGTTTVVGRCKKSGIRDHHVSRRHVEIT PEEGDEGFAQGHCRIKYIGRNCRVVL+GGILLK+GQEVPAAPGTRVVLNYNNKGLPRYSYTLLP+NNLP TTPRTA CSVGMGAAGAGDGRPWRGGPVSS  RLG SD+EMGSGRKQPFHGDAHLHAYNRPSRYS I SKQQRPRPGGRFRKEAQEK+
Sbjct:    1 MALLQSMDLEQQ-GSVIAAHTTSSQEQGAALXXXXXXXXXXXXXXXERDSPIRRAGTPCPAALRWRRQQQDGSIGRLILLPDRAETSRRFIPLEPGTTTVVGRCKKSGIRDHHVSRRHVEITAPEEGDEGFAQGHCRIKYIGRNCRVVLIGGILLKSGQEVPAAPGTRVVLNYNNKGLPRYSYTLLPANNLPATTPRTAHCSVGMGAAGAGDGRPWRGGPVSSSHRLGDSDMEMGSGRKQPFHGDAHLHAYNRPSRYSTIASKQQRPRPGGRFRKEAQEKL 280
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BLAST of mRNA_Ecto-sp13_S_contig1887.5951.1 vs. uniprot
Match: D8LR39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR39_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.570e-36
Identity = 70/78 (89.74%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:  613 MGAAGAGDGRPWRGGPVSS-PQRLGGSDVEMGSGRKQPFHGDAHLHAYNRPSRYSAIPSKQQRPRPGGRFRKEAQEKV 843
            MGAA AGDGRPWRGGPVSS P+RLGGSDVEMGSGR QPFHGDAHL AYNRPSRYS I SKQQRPRPGGRFRKEAQEK+
Sbjct:    1 MGAARAGDGRPWRGGPVSSSPRRLGGSDVEMGSGRTQPFHGDAHLDAYNRPSRYSTIASKQQRPRPGGRFRKEAQEKL 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1887.5951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLC2_9PHAE1.730e-16690.39FHA_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LR39_ECTSI1.570e-3689.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1887contigEcto-sp13_S_contig1887:11604..14824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size846
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionSMAD/FHA domain
Ec32 orthologEc-06_004470.1
Cds size846
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.6507566-CDS-Ecto-sp13_S_contig1887:11603..119031681462963.6507566-CDS-Ecto-sp13_S_contig1887:11603..11903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1887 11604..11903 +
1681462963.6599739-CDS-Ecto-sp13_S_contig1887:13397..134971681462963.6599739-CDS-Ecto-sp13_S_contig1887:13397..13497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1887 13398..13497 +
1681462963.6687467-CDS-Ecto-sp13_S_contig1887:13666..137941681462963.6687467-CDS-Ecto-sp13_S_contig1887:13666..13794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1887 13667..13794 +
1681462963.6795945-CDS-Ecto-sp13_S_contig1887:14506..148241681462963.6795945-CDS-Ecto-sp13_S_contig1887:14506..14824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1887 14507..14824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1887.5951.1prot_Ecto-sp13_S_contig1887.5951.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1887 11604..14824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1887.5951.1

>prot_Ecto-sp13_S_contig1887.5951.1 ID=prot_Ecto-sp13_S_contig1887.5951.1|Name=mRNA_Ecto-sp13_S_contig1887.5951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp
MALLQSMELEQQQGSGIAADTTSLQEPGAALAQQQEQRQEQQKQEQERDS
PIRRADTPCPAALRRRRQQQDGSIGRFILLPDRAETSRRFIPLEPGTTTV
VGRCKKSGIRDHHVSRRHVEITVPEEGDEGFAQGHCRIKYIGRNCRVVLV
GGILLKAGQEVPAAPGTRVVLNYNNKGLPRYSYTLLPSNNLPVTTPRTAR
CSVGMGAAGAGDGRPWRGGPVSSPQRLGGSDVEMGSGRKQPFHGDAHLHA
YNRPSRYSAIPSKQQRPRPGGRFRKEAQEKVR
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mRNA from alignment at Ecto-sp13_S_contig1887:11604..14824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1887.5951.1 ID=mRNA_Ecto-sp13_S_contig1887.5951.1|Name=mRNA_Ecto-sp13_S_contig1887.5951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1887:11604..14824+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACTCCTTCAATCCATGGAGTTGGAGCAGCAGCAAGGCAGTGGCAT
AGCAGCAGATACCACATCATTACAGGAACCAGGAGCAGCTCTCGCCCAGC
AGCAGGAACAACGGCAAGAACAGCAAAAGCAGGAGCAGGAGCGGGATTCG
CCCATTCGGCGAGCCGACACTCCCTGCCCCGCGGCGCTGCGACGGCGGCG
GCAGCAACAGGACGGCAGCATAGGAAGATTTATTTTGCTACCAGACCGGG
CCGAGACGAGCCGCCGGTTCATCCCGTTGGAGCCAGGGACAACAACAGTC
GTAAGTGATGGTTCTACCTGAGATGGGGGCGGGGGGCGTAGAGGTGCATA
AGACACAGGACTAGCGTGTGTATGCATCGTGATTCGTCACAGCACGTATA
GCGCCTTGCTTGGGGGACGGGGAAGTGGGAGCTTTTTTTTTGTCCGTCCG
CTGTGCGGAGAACAGCTTCAAGCTCTCTGGTTATGCTGGATTCGCTCCTA
CGAATACGTTAAATGTGTTTAACGCTGCTGTACCTGCATATCGTATGTGC
GTGATGAAAGTGTCTGGCTTCCGGGCGGCCTATTGGCAGGCGTCTCTCTC
CCTCGTCTGTCATAGTTTTTGGTTGATCCGCGCCCGGTGCCTGTGTAGGT
AGGCTGTGTAGCACGGTTTTCTTTTCGAATCCCGGTTAACTCCCGCCACG
GGAGGGGCTTCCCGTGGCTTGCCGTGGGCGCGTTTCTGTAGAAACGTTTC
ATGCGTGCATATTTCTCCGGAGAGGTGTCGTGTGTTCTCGTGCACCCACA
GGCGAGCATTACGGGCCGCTTGTGCTTTTTCAGATGGCATCCCCTACTTG
TTCGTGGACGTGTTCATCCAAATCGAGCCGGAGTTGGTAGCCGCACGTAA
ACCGATGCGGGGGCGACTCCTACCGCAAGGGGGATCTCGACTAGGATTGA
GGCGGCACCTTTCTGATGTATCTAGTCTGAAACTCGCCCCTGGTCGTTGG
CGCAAATTTGCCCCGTCACCGCCTGGGTGGTTCCACGCGTAGCGCATGCT
ACTCCTCCCTCGAGACGCAAGTGGTAGCGGGCCCGGAAATATCGATCTAC
GAGTCACCACAACGTTGCTAATCACTACAGCAGTATCACGGCAGTCTTGC
CCGATGAGAGGACCGGAGCTAATAATCCTGCATGGCAATTCGAGCTTAAT
TAGAAAAATATGCATGCATTCAAACAAAACTTTGTACTCTTTCGATTGTA
GGAAACATGGGCGGTGAATCTCGGAGAAAAATCCACCCCAAATTCGTATG
TTGTAGACACAAATTCACCCTATGTCGGGAATACCCTACTTGTAAATCGA
CAAAATGCAATTCGTCGCACAAGTTGATGGCAGCAGCTTTCGGGACTCCT
CTCAACGGAACAACTTAAGAAGACAGCTCTGTTAAACGATCTTTTCAACA
GCAGCTTTTTCGCCACACACGCCCTTGACGTCAAGAACCTCTCGTTGTTT
TGTGCTTCATGTGCACTTGGTCAATGCTTCAGTAGCTCGGTCCTACTTCC
GAATGTATCGTAAGTTTCGCACCCATGGAGTCTTCGTCGAAGAGACTGGC
CAGTGTTCAACAGCGGCCTGCACGTACACCAAAAAGTCCCTTCCAGTGTG
AATATATTGGGGGGGTTTTCTTGCGAGAGAAAGGGTGGTAATCTACAGTA
AAACTCATGATCTCGCGGTTCTCTCTGAAACTCATGATCGCGCGATTTAA
CGCTGTGTGCTGGCAATCCTAATTTCATCGAATTGCCTCCGCAGGTGGGG
AGATGCAAGAAGTCGGGCATCAGGGACCATCACGTCAGTCGTCGCCACGT
GGAGATTACCGTACCGGAGGAGGGGGATGAAGGATTCGCACAAGGTGCGC
CACCGGTCAGATATGTTGTGCTCTATGGCGCCCGAGGAGATAGTTGGAAG
TCTTGTCCGCACAGCTTACCCGAAGCACAGGATTTCTCTCCCTCTCAGCT
ATCTCTCTCTTGCCTGTGCCGGTTGTTTGGCGTTGGTTTCACATGTTTGC
CGCGGGAGAACAGGGCACTGCCGCATCAAGTACATCGGGCGTAACTGTCG
CGTCGTGTTGGTCGGTGGGATTCTGCTGAAGGCGGGGCAAGAAGTTCCGG
CCGCCCCTGGCACGAGAGTTGTCCTCAACTACAATAATAAGGTGACTTCC
GGCTCAGCCAACTCAACCAACGCCTGGCGTCCACACAAAGATCGCGGCAC
TTTTGTAGCGTTGAAGCTCTTGCGCATATACGTTGAGAGAGACTCCGAGT
GTGCTTGATCCAGGTTTGGTGCATCTTGCCCAGGAAATATCTGTCCGTCG
TATTTTTACTGAAGTCGAGCGTATCCTTTGAAACATCTGCAGCAGTGATG
ACAGCGATATAAAACACAACAATTATGGTCAAACAGGAATATATTTCGCC
CCGAAATACCCCATTGTCAAGTGGGTTTGGTTGTTCGCCAATGCCATCTC
GAGTTGTCGTTCTGAACACTATTTTTGAGGTTCACGGTTTTCCAAATTGG
ACGTTCGAGACGGATCGTCTACCGCACTCTGTTTTGAACTAACGCGGTAT
GTCGTCGCAGAAAACCATGCCGATGCGGTGAATATTGAGAGCCTGCCCTT
GTAGTTTGGAATCGAATGTGGTTGATTCGCACGCAGGATCGTGAACCAAA
AACTTCCGTTTTCTCGAACGGAAGCGGAAAGCAGTTGGTAATAACCTTCA
CAGCTTGCCGCGTCCAGAGACGGGTATTCAAAACCGTTGAGGCGGATTTC
AGAAACAACCAGTGAACACCTTGTAGAATGCCTACCTTTCTCGGTGCCTT
TTTTGACTGACCCCCACTGTAACTCCCGCCTGCCCACCCCCCTCCTAAAA
CAGGGCCTCCCACGCTACTCGTACACGCTCCTCCCCTCGAACAATCTGCC
CGTAACAACGCCAAGGACAGCACGGTGCTCAGTGGGAATGGGCGCGGCGG
GAGCGGGCGATGGCCGTCCTTGGCGAGGCGGACCTGTCTCGTCTCCTCAA
CGGTTGGGTGGTAGTGATGTGGAAATGGGGTCCGGGCGTAAACAGCCGTT
TCATGGCGATGCCCACCTACATGCCTACAACCGTCCTTCTCGATACTCCG
CGATCCCATCGAAGCAGCAGCGTCCACGACCAGGGGGGCGGTTTCGCAAG
GAGGCTCAGGAGAAGGTGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1887:11604..14824+

>mRNA_Ecto-sp13_S_contig1887.5951.1 ID=mRNA_Ecto-sp13_S_contig1887.5951.1|Name=mRNA_Ecto-sp13_S_contig1887.5951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1887:11604..14824+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACTCCTTCAATCCATGGAGTTGGAGCAGCAGCAAGGCAGTGGCAT
AGCAGCAGATACCACATCATTACAGGAACCAGGAGCAGCTCTCGCCCAGC
AGCAGGAACAACGGCAAGAACAGCAAAAGCAGGAGCAGGAGCGGGATTCG
CCCATTCGGCGAGCCGACACTCCCTGCCCCGCGGCGCTGCGACGGCGGCG
GCAGCAACAGGACGGCAGCATAGGAAGATTTATTTTGCTACCAGACCGGG
CCGAGACGAGCCGCCGGTTCATCCCGTTGGAGCCAGGGACAACAACAGTC
GTGGGGAGATGCAAGAAGTCGGGCATCAGGGACCATCACGTCAGTCGTCG
CCACGTGGAGATTACCGTACCGGAGGAGGGGGATGAAGGATTCGCACAAG
GGCACTGCCGCATCAAGTACATCGGGCGTAACTGTCGCGTCGTGTTGGTC
GGTGGGATTCTGCTGAAGGCGGGGCAAGAAGTTCCGGCCGCCCCTGGCAC
GAGAGTTGTCCTCAACTACAATAATAAGGGCCTCCCACGCTACTCGTACA
CGCTCCTCCCCTCGAACAATCTGCCCGTAACAACGCCAAGGACAGCACGG
TGCTCAGTGGGAATGGGCGCGGCGGGAGCGGGCGATGGCCGTCCTTGGCG
AGGCGGACCTGTCTCGTCTCCTCAACGGTTGGGTGGTAGTGATGTGGAAA
TGGGGTCCGGGCGTAAACAGCCGTTTCATGGCGATGCCCACCTACATGCC
TACAACCGTCCTTCTCGATACTCCGCGATCCCATCGAAGCAGCAGCGTCC
ACGACCAGGGGGGCGGTTTCGCAAGGAGGCTCAGGAGAAGGTGCGT
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