mRNA_Ecto-sp13_S_contig18848.5941.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18848.5941.1
Unique NamemRNA_Ecto-sp13_S_contig18848.5941.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: D4HLN5_9PHAE (ATP synthase subunit 9, mitochondrial (Fragment) n=7 Tax=Phaeophyceae TaxID=2870 RepID=D4HLN5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.560e-10
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
            +LG   A +  +G  VGIGTV+GAL+LGTAR+PSL+DE FR+AI
Sbjct:    1 LLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLRDELFRIAI 44          
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A0U2LTP8_9PHAE (ATP synthase subunit 9, mitochondrial n=153 Tax=Stramenopiles TaxID=33634 RepID=A0A0U2LTP8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.500e-9
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
            +LG   A +  +G  VGIGTV+ AL+LGTAR+PSLKDE FR+AI
Sbjct:    8 LLGAGLATIGLAGAGVGIGTVFAALVLGTARNPSLKDELFRIAI 51          
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: D4HLP7_9PHAE (ATP synthase subunit 9, mitochondrial (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=D4HLP7_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.510e-9
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
            +LG   A +  +G  VGIGTV+GAL+LGTAR+PSLK+E  R+AI
Sbjct:    1 LLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKEELIRIAI 44          
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A2U9GIF0_9STRA (ATP synthase subunit 9, mitochondrial n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2U9GIF0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.440e-8
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1
Query:   34 SGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
            +G  VGIGTV+GAL++G +R+PSLKDE FRMAI
Sbjct:   19 AGAGVGIGTVFGALVIGISRNPSLKDEMFRMAI 51          
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A343A6X7_9STRA (ATP synthase subunit 9, mitochondrial n=5 Tax=Naviculales TaxID=38748 RepID=A0A343A6X7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.910e-8
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1
Query:    4 LGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
            +G   A +  +G  VGIGTV+GAL++G +R+PSLKDE F+MAI
Sbjct:    9 IGAGLATIGLAGAGVGIGTVFGALVIGISRNPSLKDELFKMAI 51          
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A8F0FD85_9PHAE (ATP synthase subunit 9, mitochondrial n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD85_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.910e-8
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
            +LG   A +  +G  VGIGTV+GAL+LG +R+P+LKDE F+ AI
Sbjct:    8 ILGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAI 51          
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A4Y5T8G9_9PHAE (ATP synthase subunit 9, mitochondrial n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A4Y5T8G9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.910e-8
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
            ++G   A +  +G  VGIGTV+GAL+LGTAR+PS+K++ FR AI
Sbjct:    8 LIGAGLATIGLAGAGVGIGTVFGALVLGTARNPSIKNDLFRFAI 51          
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: D4HLM7_9PHAE (ATP synthase subunit 9, mitochondrial (Fragment) n=1 Tax=Ascoseira mirabilis TaxID=76830 RepID=D4HLM7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 5.350e-8
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
            +LG   A +  +G  VGIGTV+GA +LGTAR+PSLK E F++AI
Sbjct:    1 LLGAGLATIGLAGAGVGIGTVFGAHVLGTARNPSLKKELFKLAI 44          
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: Q3S284_THAPS (ATP synthase subunit 9, mitochondrial n=16 Tax=Bacillariophyta TaxID=2836 RepID=Q3S284_THAPS)

HSP 1 Score: 52.4 bits (124), Expect = 8.320e-8
Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1
Query:   34 SGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
            +G  VGIGTV+GAL++G +R+PSLKDE F++AI
Sbjct:   19 AGAGVGIGTVFGALVIGVSRNPSLKDELFKLAI 51          
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A2U9GIS1_9STRA (ATP synthase subunit 9, mitochondrial n=1 Tax=Eunotia naegelii TaxID=1458866 RepID=A0A2U9GIS1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 9.130e-8
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1
Query:   34 SGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
            +G  VGIGTV+G+LILG AR+PS KDE F+MAI
Sbjct:   23 AGAGVGIGTVFGSLILGIARNPSYKDELFKMAI 55          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D4HLN5_9PHAE5.560e-1061.36ATP synthase subunit 9, mitochondrial (Fragment) n... [more]
A0A0U2LTP8_9PHAE2.500e-961.36ATP synthase subunit 9, mitochondrial n=153 Tax=St... [more]
D4HLP7_9PHAE6.510e-959.09ATP synthase subunit 9, mitochondrial (Fragment) n... [more]
A0A2U9GIF0_9STRA1.440e-869.70ATP synthase subunit 9, mitochondrial n=3 Tax=Euka... [more]
A0A343A6X7_9STRA2.910e-855.81ATP synthase subunit 9, mitochondrial n=5 Tax=Navi... [more]
A0A8F0FD85_9PHAE2.910e-854.55ATP synthase subunit 9, mitochondrial n=1 Tax=Prot... [more]
A0A4Y5T8G9_9PHAE2.910e-854.55ATP synthase subunit 9, mitochondrial n=1 Tax=Ishi... [more]
D4HLM7_9PHAE5.350e-856.82ATP synthase subunit 9, mitochondrial (Fragment) n... [more]
Q3S284_THAPS8.320e-863.64ATP synthase subunit 9, mitochondrial n=16 Tax=Bac... [more]
A0A2U9GIS1_9STRA9.130e-869.70ATP synthase subunit 9, mitochondrial n=1 Tax=Euno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18848contigEcto-sp13_S_contig18848:1922..2056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size135
Hectar predicted targeting categorysignal peptide
Exons1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.0178878-CDS-Ecto-sp13_S_contig18848:1921..20561681462963.0178878-CDS-Ecto-sp13_S_contig18848:1921..2056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18848 1922..2056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18848.5941.1prot_Ecto-sp13_S_contig18848.5941.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18848 1922..2056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18848.5941.1

>prot_Ecto-sp13_S_contig18848.5941.1 ID=prot_Ecto-sp13_S_contig18848.5941.1|Name=mRNA_Ecto-sp13_S_contig18848.5941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI*
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mRNA from alignment at Ecto-sp13_S_contig18848:1922..2056-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18848.5941.1 ID=mRNA_Ecto-sp13_S_contig18848.5941.1|Name=mRNA_Ecto-sp13_S_contig18848.5941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18848:1922..2056- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTGGGTCTGCTCTTTGCTCTTCTCCGCCGCAGTGGAACTAATGTGGG AATTGGAACTGTTTATGGTGCTCTCATTTTAGGTACCGCACGTCATCCTT CTCTGAAAGATGAGACATTTAGAATGGCAATTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18848:1922..2056-

>mRNA_Ecto-sp13_S_contig18848.5941.1 ID=mRNA_Ecto-sp13_S_contig18848.5941.1|Name=mRNA_Ecto-sp13_S_contig18848.5941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18848:1922..2056- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTGGGTCTGCTCTTTGCTCTTCTCCGCCGCAGTGGAACTAATGTGGG
AATTGGAACTGTTTATGGTGCTCTCATTTTAGGTACCGCACGTCATCCTT
CTCTGAAAGATGAGACATTTAGAATGGCAATTTGA
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