mRNA_Ecto-sp13_S_contig18848.5941.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: D4HLN5_9PHAE (ATP synthase subunit 9, mitochondrial (Fragment) n=7 Tax=Phaeophyceae TaxID=2870 RepID=D4HLN5_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 5.560e-10 Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1
Query: 1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
+LG A + +G VGIGTV+GAL+LGTAR+PSL+DE FR+AI
Sbjct: 1 LLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLRDELFRIAI 44
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A0U2LTP8_9PHAE (ATP synthase subunit 9, mitochondrial n=153 Tax=Stramenopiles TaxID=33634 RepID=A0A0U2LTP8_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 2.500e-9 Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1
Query: 1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
+LG A + +G VGIGTV+ AL+LGTAR+PSLKDE FR+AI
Sbjct: 8 LLGAGLATIGLAGAGVGIGTVFAALVLGTARNPSLKDELFRIAI 51
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: D4HLP7_9PHAE (ATP synthase subunit 9, mitochondrial (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=D4HLP7_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 6.510e-9 Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query: 1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
+LG A + +G VGIGTV+GAL+LGTAR+PSLK+E R+AI
Sbjct: 1 LLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKEELIRIAI 44
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A2U9GIF0_9STRA (ATP synthase subunit 9, mitochondrial n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2U9GIF0_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 1.440e-8 Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1
Query: 34 SGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
+G VGIGTV+GAL++G +R+PSLKDE FRMAI
Sbjct: 19 AGAGVGIGTVFGALVIGISRNPSLKDEMFRMAI 51
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A343A6X7_9STRA (ATP synthase subunit 9, mitochondrial n=5 Tax=Naviculales TaxID=38748 RepID=A0A343A6X7_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 2.910e-8 Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1
Query: 4 LGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
+G A + +G VGIGTV+GAL++G +R+PSLKDE F+MAI
Sbjct: 9 IGAGLATIGLAGAGVGIGTVFGALVIGISRNPSLKDELFKMAI 51
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A8F0FD85_9PHAE (ATP synthase subunit 9, mitochondrial n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD85_9PHAE) HSP 1 Score: 53.5 bits (127), Expect = 2.910e-8 Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
+LG A + +G VGIGTV+GAL+LG +R+P+LKDE F+ AI
Sbjct: 8 ILGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAI 51
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A4Y5T8G9_9PHAE (ATP synthase subunit 9, mitochondrial n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A4Y5T8G9_9PHAE) HSP 1 Score: 53.5 bits (127), Expect = 2.910e-8 Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1
Query: 1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
++G A + +G VGIGTV+GAL+LGTAR+PS+K++ FR AI
Sbjct: 8 LIGAGLATIGLAGAGVGIGTVFGALVLGTARNPSIKNDLFRFAI 51
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: D4HLM7_9PHAE (ATP synthase subunit 9, mitochondrial (Fragment) n=1 Tax=Ascoseira mirabilis TaxID=76830 RepID=D4HLM7_9PHAE) HSP 1 Score: 52.4 bits (124), Expect = 5.350e-8 Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 1 VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
+LG A + +G VGIGTV+GA +LGTAR+PSLK E F++AI
Sbjct: 1 LLGAGLATIGLAGAGVGIGTVFGAHVLGTARNPSLKKELFKLAI 44
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: Q3S284_THAPS (ATP synthase subunit 9, mitochondrial n=16 Tax=Bacillariophyta TaxID=2836 RepID=Q3S284_THAPS) HSP 1 Score: 52.4 bits (124), Expect = 8.320e-8 Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1
Query: 34 SGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
+G VGIGTV+GAL++G +R+PSLKDE F++AI
Sbjct: 19 AGAGVGIGTVFGALVIGVSRNPSLKDELFKLAI 51
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Match: A0A2U9GIS1_9STRA (ATP synthase subunit 9, mitochondrial n=1 Tax=Eunotia naegelii TaxID=1458866 RepID=A0A2U9GIS1_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 9.130e-8 Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1
Query: 34 SGTNVGIGTVYGALILGTARHPSLKDETFRMAI 132
+G VGIGTV+G+LILG AR+PS KDE F+MAI
Sbjct: 23 AGAGVGIGTVFGSLILGIARNPSYKDELFKMAI 55 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18848.5941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18848.5941.1 >prot_Ecto-sp13_S_contig18848.5941.1 ID=prot_Ecto-sp13_S_contig18848.5941.1|Name=mRNA_Ecto-sp13_S_contig18848.5941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp VLGLLFALLRRSGTNVGIGTVYGALILGTARHPSLKDETFRMAI*back to top mRNA from alignment at Ecto-sp13_S_contig18848:1922..2056- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18848.5941.1 ID=mRNA_Ecto-sp13_S_contig18848.5941.1|Name=mRNA_Ecto-sp13_S_contig18848.5941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18848:1922..2056- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18848:1922..2056- >mRNA_Ecto-sp13_S_contig18848.5941.1 ID=mRNA_Ecto-sp13_S_contig18848.5941.1|Name=mRNA_Ecto-sp13_S_contig18848.5941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18848:1922..2056- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |