mRNA_Ecto-sp13_S_contig1884.5938.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1884.5938.1
Unique NamemRNA_Ecto-sp13_S_contig1884.5938.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1884.5938.1 vs. uniprot
Match: D7G417_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G417_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 9.690e-78
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:   37 MSSPAYATIAETSGKINAVIGQPQSAEAAPLVAPPGAPTVGMWVEERYCGLTTWLITLVGGLPCSYFCPCDRRTVWVSGGVKYNEKGAVTDDYLFLNPCPPGSTCHPNPTA 369
            MS+ AYATI ETSGKINAVIGQPQSAEAAPLVAPPGAPTVGMWVEERYCGLTTWLITLVGGLPCSYFCPCDRRTVWVSGGVKYNEKGAVTDDYLFLNPCPPGSTCHPNPTA
Sbjct:    1 MSAAAYATIDETSGKINAVIGQPQSAEAAPLVAPPGAPTVGMWVEERYCGLTTWLITLVGGLPCSYFCPCDRRTVWVSGGVKYNEKGAVTDDYLFLNPCPPGSTCHPNPTA 111
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BLAST of mRNA_Ecto-sp13_S_contig1884.5938.1 vs. uniprot
Match: D8LMJ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMJ4_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 9.840e-44
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:   64 AETSGKINAVIGQP--QSAEAAPLVAPPGAPTVGMWVEERYCGLTTWLITLVGGLPCSYFCPCDRRTVWVSGGVKYNEKGAVTDDYLFLNP 330
            AE      AV GQP  Q+AEAAP++A PGAPT GMWVEERYCGLTTWLIT+VG  PCSYFCPCDRRTVWV+GG KYNEKGA+ DD LF+NP
Sbjct:   18 AEAPPTAYAVTGQPVPQAAEAAPVMAAPGAPTTGMWVEERYCGLTTWLITVVGSFPCSYFCPCDRRTVWVAGGKKYNEKGAIVDDQLFVNP 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1884.5938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G417_ECTSI9.690e-7897.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMJ4_ECTSI9.840e-4474.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1884contigEcto-sp13_S_contig1884:11364..14101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size374
Hectar predicted targeting categorymitochondrion
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_000450.1
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462962.8656297-CDS-Ecto-sp13_S_contig1884:11363..114531681462962.8656297-CDS-Ecto-sp13_S_contig1884:11363..11453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1884 11364..11453 -
1681462962.8754404-CDS-Ecto-sp13_S_contig1884:12696..128551681462962.8754404-CDS-Ecto-sp13_S_contig1884:12696..12855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1884 12697..12855 -
1681462962.8843849-CDS-Ecto-sp13_S_contig1884:13279..133241681462962.8843849-CDS-Ecto-sp13_S_contig1884:13279..13324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1884 13280..13324 -
1681462962.89405-CDS-Ecto-sp13_S_contig1884:14023..141011681462962.89405-CDS-Ecto-sp13_S_contig1884:14023..14101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1884 14024..14101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1884.5938.1prot_Ecto-sp13_S_contig1884.5938.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1884 11364..14101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1884.5938.1

>prot_Ecto-sp13_S_contig1884.5938.1 ID=prot_Ecto-sp13_S_contig1884.5938.1|Name=mRNA_Ecto-sp13_S_contig1884.5938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
LSLRLQRTRPAIMSSPAYATIAETSGKINAVIGQPQSAEAAPLVAPPGAP
TVGMWVEERYCGLTTWLITLVGGLPCSYFCPCDRRTVWVSGGVKYNEKGA
VTDDYLFLNPCPPGSTCHPNPTA*
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mRNA from alignment at Ecto-sp13_S_contig1884:11364..14101-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1884.5938.1 ID=mRNA_Ecto-sp13_S_contig1884.5938.1|Name=mRNA_Ecto-sp13_S_contig1884.5938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1884:11364..14101- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCTCTCCGTCTACAGAGGACTCGGCCAGCAATAATGAGCTCTCCCGC
GTACGCGACCATCGCTGAGACTTCTGGGGTAAGAAGCACTGCATAACTAG
CGCGATGCGTGTCAACAAGTAGACACAGCAGCAACCCGTGCTCTTTATGT
TCTTTTTTCGCAATCCTATACAGACGGAGTAGGATGATTCGAAGTCAAGA
AATTCTACTGCCACATTGCCTTCTACCCTGGACAAACTGCTGATACCCCA
TTCCTACCGATCTGCTCTCAGCCACACGCAATTGTTCTCCTCCAATACCT
GGGCTGTCTTCGTTTCCGCAGCTCTTATCTATGCTTTGTGTTGAATTCCG
CGTATGGATTCAATCAGGAAGAAAAACGCGAGATGGCGACCTACTGCGCA
AAAGTTCCGAGAATCACAGGAGATTATACCATAGGCATCCTGTTCGTGGA
GAATTCAGGCAACACCGCAAGCCACCCTAGTGCCGGCCGGGCGCCCTTCG
ACGTCGCCCGTACCCCTGTTGCGCAGGCAGTGCCATCTGTCAACCCCACG
TTAAGTTCCTTTGGCTGATGCAATCAGTGTACAGTTGATAACCGATGCGG
CAGACTCATCTGTGACTTTGTACATCCTCCACATGATGATCTGCTTGTTC
TCGGAAGAGCTCAATCCTTCCGACTCATGGGTTGTTGACATGCTACTTTA
GTACCTCGTACTTCTGTAACGCGCACGAATGATAACTGCTCCCTGCCTCG
CCACGCGCCTTCTTCCCGGATGGCCAGAAGATCAATGCCGTGATTGGACA
GCCTCAGTCTGCGGAGGCGGCGGTGAGTGATACATTTTAGACGTTGATTG
GTCGAGAAATGAGGAGTTGCGCGCGAGAGAGAGAAAGAGAGACAGAGACA
GAGACAGAGACAGAGACAGAGACAGAGACAGACAGACAGACAGACAGACA
GACAGACAGACAGATAGGCAGACAGACAGACAGGGAAAGAGAGAAGGCGG
TGGCGTGCGGCGTGTTTCTCGTGAGCGTGTGTGTTCTGTCCACATGTAAC
ACGGTGGATTGTCCTGGTTTCATGTATTCCGGTTGTGTCAAGTGTGGAAA
GGTGCCCGAGTTGTGATCTGATGTGTGCGTATACTGTAGTACCTCCGCGC
GAACCCAGACGACGATATTTACTCAGCAACAACGAACTCTCACCGCGTAC
GACGCTCTTTAAGTGCCTTCCTCCTTGCTGAAAAATGACACTGCAGCCCC
TCGTCGCCCCGCCTGGAGCGCCCACCGTGGGGATGTGGGTAGAAGAGCGC
TACTGCGGGCTTACCACTTGGCTCATCACCCTCGTGGGAGGCCTCCCGTG
TTCGTACTTCTGCCCTTGCGACCGTAGGACGGTATGGGTCAGCGGAGGAG
TCAAGGTCAGTCTTGAGGTCTTGACATGATTGACGGGGAAAACAAGCACG
GAACACGCCCGCGCCTACTTTACCCTACTAGAACTGGAAGCCCAAATAGG
GATACTTTGGGGACAGAGCACTCAAACGCCTGTTTTACCGCACCGTGGTC
GTCAAGATGTACTGTACTATGCTCCGCTGCGTGAAACGTGCGTGGGAAAC
CTTGGTCTAGCATGCTTGTGTGATGTGGTAAGCTGTGTGATGTACTGTTG
TGTGATCCTGTGGGCCTCTAATAGGCCTCTGACTTCTTGTACAGAATTCT
CTCCCTGGCCGCGGGTCCCCGTTTGGTAAACAGTACTGTAGTCTACAGTA
GTACTGGAAAAAATGTTGGCTTCGCTTCAGTATAGACAGTGTCGCCAGTG
CACTTGGGGACACTTCCCATGCTGAAGCCGAGTCGGCCTTCAACCGTCGG
GACTGCTGCACAGCCCCTCCCAATGAGCGGACGCGATTTTTGCTGGACCC
ATGACCTGTAACTAACTGGCTACTACATGTAGGAGGGTGAAGAACCTCTA
CTTTGGCCGACGCTGGAGTTGTTGGAGTCATGCTATGAATGGCTGCCATA
TATAGGGTTTAGTACAGAGGTTGTTAACCGAGCTCAGAGGTGTTGCTCAA
GTTGTTGTTTTTGGAGTTTATTTAGGCTCTATCTGTCTTGTAACTGTTGT
AACTGCCAGGTTCTCAAGTGCAGGCGCTCTCTGTAGTGCACGAACACAGC
CTCGCTTGATTTTTTCTTTCTGTAGTTTCACGTTTTGACAAGGACTGGCA
TGCAAGGCGCAGCACCATGAACTACCATGAAATACCACCGCGCACGCCGC
TGTTGGGTGGACTTTGCATTTTTGTCGGTGCAGGAGTTTCCTCGGCTCGA
CTGCTGTGCATTAATGCCTAGGTTTTTGCGCACAATTCAAGTCCTGCATG
TCTCATAACAACTACTTGTGACTGTTGTTGCAGTTCCTTCTTTTCTTGCT
GCTGCGGCGGTCGCGGCTTCCTATCCGTTCCCCCCTCCCCGCAAACTTGA
CATCTTGACTTAATTCCCATGCTCGGCAATAGAATCAGCCGCTGTAATAG
CATGTTGTGCATCGAGTTTGCTACATACCGTAGGTATATCCTGTCTGTTT
GTGCGCTTTGTGTGTTGGCAATTGCTTCCTATAATTTCCCTCTCTTGCTT
ATGATCTCTCGTTCCCCCGACCCACTCCGTTATCTTTTTTTTTTCCAGTA
CAACGAGAAGGGAGCCGTGACCGACGACTACCTCTTCCTCAACCCCTGCC
CACCGGGAAGCACTTGCCACCCCAACCCCACTGCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1884:11364..14101-

>mRNA_Ecto-sp13_S_contig1884.5938.1 ID=mRNA_Ecto-sp13_S_contig1884.5938.1|Name=mRNA_Ecto-sp13_S_contig1884.5938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1884:11364..14101- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCTCTCCGTCTACAGAGGACTCGGCCAGCAATAATGAGCTCTCCCGC
GTACGCGACCATCGCTGAGACTTCTGGGAAGATCAATGCCGTGATTGGAC
AGCCTCAGTCTGCGGAGGCGGCGCCCCTCGTCGCCCCGCCTGGAGCGCCC
ACCGTGGGGATGTGGGTAGAAGAGCGCTACTGCGGGCTTACCACTTGGCT
CATCACCCTCGTGGGAGGCCTCCCGTGTTCGTACTTCTGCCCTTGCGACC
GTAGGACGGTATGGGTCAGCGGAGGAGTCAAGTACAACGAGAAGGGAGCC
GTGACCGACGACTACCTCTTCCTCAACCCCTGCCCACCGGGAAGCACTTG
CCACCCCAACCCCACTGCCTAA
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