mRNA_Ecto-sp13_S_contig18817.5933.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18817.5933.1
Unique NamemRNA_Ecto-sp13_S_contig18817.5933.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18817.5933.1 vs. uniprot
Match: D8LEC4_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEC4_ECTSI)

HSP 1 Score: 383 bits (984), Expect = 1.280e-130
Identity = 194/201 (96.52%), Postives = 195/201 (97.01%), Query Frame = 1 
Query:    1 RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKATFDLCQDFHSIYDTPLVRDKEGEEWKQYLQAAVLFLVLSPNDNHQQDMLFRVAEYKMLEELPAYKMLVKLFTTPEIIGYPVENQEALESDPCLAAGGPELLTKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVAGTVT 603
            RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKATFDLCQDFHSIYDTP VRDKEGEEWKQYLQAAVLFLVLSPN NHQQDMLFRVAEYK LEELPAYKMLVKLFTTPEIIGYPVENQEALESDPCLAAGGPELL KWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVA  V+
Sbjct:  182 RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKATFDLCQDFHSIYDTPSVRDKEGEEWKQYLQAAVLFLVLSPNGNHQQDMLFRVAEYKKLEELPAYKMLVKLFTTPEIIGYPVENQEALESDPCLAAGGPELLAKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVADMVS 382
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BLAST of mRNA_Ecto-sp13_S_contig18817.5933.1 vs. uniprot
Match: A0A7S2V6L0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6L0_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.040e-63
Identity = 112/202 (55.45%), Postives = 148/202 (73.27%), Query Frame = 1 
Query:    1 RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKATFDLCQDFHSIYDTPLVRDKEGEEWKQYLQAAVLFLVLSPNDNHQQDMLFRVAEYKMLEELPAYKMLVKLFTTPEIIGYPVENQEALESDPCLAAGGPELLT-KWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVAGTVT 603
            RLTLAKKD+VRALIQSRKI+RKVL +EDMQDIK+ FY+LMIEY T+E+   +LC+ +HSI  TP V + + + WK+ L+A VLFLVLSP  N QQD+L +VA    LE+LP +K L  +FTT ++IGYP++ Q+ LE+ PCLA   P  L  KW + L+ R VQH+IR V+ YYK+I  +RLA+LLGLD  Q E  ++  V+
Sbjct:  180 RLTLAKKDYVRALIQSRKISRKVLEEEDMQDIKINFYRLMIEYHTYEEDPLELCRHYHSILHTPKVAEDDAQ-WKEALEATVLFLVLSPQTNTQQDLLQKVALDTRLEKLPNFKNLTTVFTTQQVIGYPLQGQQDLEAHPCLARHAPPTLPQKWAQQLRTRTVQHSIRVVSKYYKRIRMQRLAELLGLDVPQTESHLSTMVS 380
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BLAST of mRNA_Ecto-sp13_S_contig18817.5933.1 vs. uniprot
Match: A0A835ZAZ9_9STRA (PCI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ9_9STRA)

HSP 1 Score: 206 bits (523), Expect = 5.170e-61
Identity = 112/215 (52.09%), Postives = 148/215 (68.84%), Query Frame = 1 
Query:    1 RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKATFDLCQDFHSIYDTPLVRDKEGEEWKQYLQAAVLFLVLSPNDNHQQDMLFRVAEYKMLEELPAYKMLVKLFTTPEIIGYPVENQEALES---DPCLAAG-----GPELLTKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVAGTVTHAVTCA 621
            RLTL KKD+VRALIQSRKINRK++  +DMQ++KVRFY+LM++YD HEK  F LC D+H+I+ T +++  + ++ +  L++ V++LVLSP  N QQDML RV+ Y  L+EL +YK L+KLFTT EII YP+     LE+   +   A G     GP LL +W +DL  R+VQHNIR  A YYKQI T RLA LLGLDE   ER ++  V+     A
Sbjct:  182 RLTLLKKDYVRALIQSRKINRKIIEGDDMQELKVRFYRLMLDYDLHEKDPFSLCCDYHAIFATAIIK-ADAQQRQAALKSCVVYLVLSPYTNTQQDMLHRVSRYPELDELTSYKTLLKLFTTYEIIDYPLPFAAELEAHIKESIAATGTDPELGPPLLEQWLKDLHTRVVQHNIRVAAKYYKQIRTARLATLLGLDEGTTERSLSTMVSDGTLYA 395
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BLAST of mRNA_Ecto-sp13_S_contig18817.5933.1 vs. uniprot
Match: A0A4D9CRV0_9STRA (PCI domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRV0_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.170e-51
Identity = 97/212 (45.75%), Postives = 139/212 (65.57%), Query Frame = 1 
Query:    1 RLTLAKKDFVRALIQSRKINRKVLLDED--MQDIKVRFYKLMIEYDT-HEKATFDLCQDFHSIYDTPLVRDKEGEEWKQYLQAAVLFLVLSPNDNHQQDMLFRVA--EYKMLEELPAYKMLVKLFTTPEIIGYPVENQEALESDPCLAAGGPELLTKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVAGTVTHAVTCA 621
            RLTLAKKDF+R  I ++K+ +K+L  ED  +Q +K++FY+LMIEY +  EK  F++ Q +HSIY+TP+VR +E E W+  L A VLFL+++P+ N Q DML R+   E   L +LP YK ++K +TT EII YP+     +ES P L   G EL   W + L+ R++QHNIR +++YYK+I   R ADLL LD ++ E  +A  V+     A
Sbjct:  184 RLTLAKKDFIRTYIIAKKVTKKLLEGEDPALQALKLKFYRLMIEYHSLAEKEAFEIAQHYHSIYNTPVVRAEESE-WRAALSACVLFLIIAPHSNQQSDMLHRLVRQEEDQLAQLPVYKEILKTYTTREIIRYPLPQLPDIESHPALTLYGHELAQHWLQQLRTRVIQHNIRVLSAYYKKIRLTRAADLLSLDVSELENNIATLVSEGALYA 394
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BLAST of mRNA_Ecto-sp13_S_contig18817.5933.1 vs. uniprot
Match: F0YET2_AURAN (PCI domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YET2_AURAN)

HSP 1 Score: 180 bits (456), Expect = 5.070e-51
Identity = 100/206 (48.54%), Postives = 134/206 (65.05%), Query Frame = 1 
Query:    1 RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKATFDLCQDFHSIYDTPLVRDKEGEEWKQYLQAAVLFLVLSPNDNHQQDMLFRV----AEYKMLEELPAYKMLVKLFTTPEIIGYPV-ENQEALESDPCLAAGGPELLTKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVAGTVT 603
            RL LAK D VRA I S+K+ RK LL++D+QD+KVRFYKLM+EY   E   F+L QDF +I+ T  V D E   W+  L +  +FL LS +     DM+ RV    A    L+ LP  K L+ LFTT EII YP+ ++Q A+E  PCL   G ++  +WK+ L  R+VQHN+R VA YY+QI+  RLA+LLGL E++AER V+  V+
Sbjct:  189 RLMLAKGDRVRAYILSKKVQRKTLLEDDLQDLKVRFYKLMVEYHVLEDEPFELAQDFFAIFSTKCVLDDEAA-WRDALSSTAIFLALSDHAPGVSDMMHRVLADAAAAPKLDALPTSKALLALFTTDEIIAYPMPDHQAAVEDHPCLKTAGDDVHLRWKKTLHTRVVQHNVRVVAKYYRQISVARLANLLGLSEDEAERHVSHMVS 393
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BLAST of mRNA_Ecto-sp13_S_contig18817.5933.1 vs. uniprot
Match: A0A7S2RAT1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAT1_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.050e-50
Identity = 90/210 (42.86%), Postives = 139/210 (66.19%), Query Frame = 1 
Query:    1 RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKATFDLCQDFHSIYDTPLVRDKEGE---EWKQYLQAAVLFLVLSPNDNHQQDMLFRVAEYKMLEELPAYKMLVKLFTTPEIIGYPVENQEALESDPCLAAGGPELLTKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVAGTVTHAVTCA 621
            R+T+AK+D+VR LI ++K+ +K++ + D+QD+K+R+++LM EY  HEK  F+L Q F+S+YDTP + + + +    WK +L++ +LFL L+P  NHQ DML R+A  + LE+L  +  +VKLFTT EII +P+  Q  +E       G PEL   W++    R  QHN+R VA YYK+I   RLA+LLGL  ++AE++++  V+     A
Sbjct:  214 RMTIAKQDWVRVLIVAKKVQKKIIDEPDLQDLKMRYHRLMTEYYLHEKDAFELAQSFYSLYDTPCIAEDDSDLVSGWKHHLKSCILFLCLAPQTNHQADMLHRIAAIEKLEQLDEWHGVVKLFTTDEIITFPLPQQPVVEQ-LLKEVGTPELFPYWQQQTHERTTQHNMRVVAKYYKRIRMVRLAELLGLTVDEAEKQLSALVSQGALYA 422
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BLAST of mRNA_Ecto-sp13_S_contig18817.5933.1 vs. uniprot
Match: B7FQA9_PHATC (Regulatory proteasome non-atpase subunit 5 n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQA9_PHATC)

HSP 1 Score: 179 bits (454), Expect = 1.060e-50
Identity = 97/202 (48.02%), Postives = 133/202 (65.84%), Query Frame = 1 
Query:    1 RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKATFDLCQDFHSIYDTPLVRDKEGEEWKQYLQAAVLFLVLSPNDNHQQDMLFRVAEYKMLEELPAYKMLVKLFTTPEIIGYPVENQEALESDPCLAAGGPELLTKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVAGTVTH 606
            RLTLAKKDFVRA I + K+++K L +E+M+  KV+FY LM  Y  H+K   DL +D+H+IY TP +   +G +W++ LQA V+FL LSP DN QQDML R+A  + LE+LPA K  + L    EII YP+ +Q  LE+ P    GG +L   W E    RI+QHNIR V+ YYK+I+  RLA LL L+  + E+++A  V+ 
Sbjct:  202 RLTLAKKDFVRAAIVAGKVSKKNLAEENMKTYKVQFYTLMTIYHRHDKNALDLARDYHAIYLTPHIL-ADGVKWREALQATVVFLALSPYDNEQQDMLNRIALEENLEKLPACKKTIDLLLKKEIINYPMTHQAELEALPVCHEGGEDLAAHWHEVFHRRIIQHNIRVVSVYYKRIHGARLAQLLQLEPARVEKEIASMVSE 402
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BLAST of mRNA_Ecto-sp13_S_contig18817.5933.1 vs. uniprot
Match: A0A7S4EB77_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EB77_9STRA)

HSP 1 Score: 172 bits (437), Expect = 8.820e-50
Identity = 97/209 (46.41%), Postives = 135/209 (64.59%), Query Frame = 1 
Query:    1 RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKATFDLCQDFHSIYDTPLVRDKEGEEWKQYLQAAVLFLVLSPNDNHQQDMLFRV----AEYKMLEELPAYKMLVKLFTTPEIIGYPV--ENQEALESDPCLAAGGPELLTKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVAGTVTHA 609
            RL LAK D VRA I S+K+ RK L ++D+QD+KVRFYKLM EY   E A FDL Q+F +I++T  V+D E   W+  L +  LFL LS +     DM+ RV         LE+LP  K L+ LFTT EI+ YP+  E+Q A+E+ P L   G E+  +WK  L+ R++QHNIR V+ YY+Q++  RLA+LLGL  ++AE+ V+  V+ +
Sbjct:   35 RLMLAKGDRVRAYILSKKVQRKTLEEDDLQDLKVRFYKLMSEYHVLEDAPFDLAQNFWAIFNTKTVQDDEAS-WRDALSSTALFLALSQHAPGVSDMMHRVLADATAAPKLEKLPTAKHLLTLFTTQEIVAYPLTEEHQRAVEAHPALHTAGAEIHQRWKNTLRERVIQHNIRVVSGYYRQLSMARLANLLGLSVDEAEKHVSDMVSDS 242
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BLAST of mRNA_Ecto-sp13_S_contig18817.5933.1 vs. uniprot
Match: A0A7S4A230_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A230_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.220e-48
Identity = 97/209 (46.41%), Postives = 135/209 (64.59%), Query Frame = 1 
Query:    1 RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKATFDLCQDFHSIYDTPLVRDKEGEEWKQYLQAAVLFLVLSPNDNHQQDMLFRV----AEYKMLEELPAYKMLVKLFTTPEIIGYPV--ENQEALESDPCLAAGGPELLTKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVAGTVTHA 609
            RL LAK D VRA I S+K+ RK L ++D+QD+KVRFYKLM EY   E A FDL Q+F +I++T  V+D E   W+  L +  LFL LS +     DM+ RV         LE+LP  K L+ LFTT EI+ YP+  E+Q A+E+ P L   G E+  +WK  L+ R++QHNIR V+ YY+Q++  RLA+LLGL  ++AE+ V+  V+ +
Sbjct:  188 RLMLAKGDRVRAYILSKKVQRKTLEEDDLQDLKVRFYKLMSEYHVLEDAPFDLAQNFWAIFNTKTVQDDEAS-WRDALSSTALFLALSQHAPGVSDMMHRVLADATAAPKLEKLPTAKHLLTLFTTQEIVAYPLTEEHQRAVEAHPALHTAGAEIHQRWKNTLRERVIQHNIRVVSGYYRQLSMARLANLLGLSVDEAEKHVSDMVSDS 395
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BLAST of mRNA_Ecto-sp13_S_contig18817.5933.1 vs. uniprot
Match: A0A7S1ZZ80_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ80_TRICV)

HSP 1 Score: 172 bits (436), Expect = 7.330e-48
Identity = 92/201 (45.77%), Postives = 127/201 (63.18%), Query Frame = 1 
Query:    1 RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKATFDLCQDFHSIYDTPLVRDKEGEEWKQYLQAAVLFLVLSPNDNHQQDMLFRVAEYKMLEELPAYKMLVKLFTTPEIIGYPVENQEALESDPCLAAGGPELLTKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVAGTVT 603
            RLTL KKD++RA I + KINRK + +E M+  K++F+ LM EY  HEK   +L +D+HSIY T  V+  E + WK  LQ+ VLFL LS   N QQDML R+     LE++ + K  VKL    EII YP+ +Q  LE+ P    GGP+L   W +    RIVQHN+R  A YY++I+ +RLA LLGL+  + E +++  V+
Sbjct:  225 RLTLGKKDYIRAAIVAGKINRKAVSEEGMEGEKIKFFTLMTEYHRHEKDAIELAKDYHSIYSTSSVQANEAD-WKDALQSTVLFLALSQYSNEQQDMLNRINLDPNLEKIESCKETVKLLLKKEIIHYPLPHQAELEAMPSFTVGGPDLTAHWHKIFHTRIVQHNVRVAALYYRRIHGRRLAQLLGLEPAELEAEISNMVS 424
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18817.5933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEC4_ECTSI1.280e-13096.52PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V6L0_9STRA1.040e-6355.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZAZ9_9STRA5.170e-6152.09PCI domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9CRV0_9STRA2.170e-5145.75PCI domain-containing protein n=2 Tax=Monodopsidac... [more]
F0YET2_AURAN5.070e-5148.54PCI domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2RAT1_9STRA1.050e-5042.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B7FQA9_PHATC1.060e-5048.02Regulatory proteasome non-atpase subunit 5 n=3 Tax... [more]
A0A7S4EB77_9STRA8.820e-5046.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A230_9STRA3.220e-4846.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1ZZ80_TRICV7.330e-4845.77Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18817contigEcto-sp13_S_contig18817:3..2401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score387.5
Seed ortholog evalue4e-105
Seed eggNOG ortholog2880.D8LEC4
Preferred namePSMD12
Model size627
KEGG koko:K03035
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000338,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007088,GO:0007275,GO:0007346,GO:0008021,GO:0008150,GO:0008152,GO:0008180,GO:0008541,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016192,GO:0016579,GO:0016604,GO:0016607,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030071,GO:0030133,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044456,GO:0044464,GO:0045055,GO:0045202,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070382,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:0097458,GO:0097708,GO:0098793,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Exons5
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsCOG5071@1,KOG1498@2759
Cds size627
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462962.4987404-CDS-Ecto-sp13_S_contig18817:2..1011681462962.4987404-CDS-Ecto-sp13_S_contig18817:2..101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18817 3..101 +
1681462962.51509-CDS-Ecto-sp13_S_contig18817:742..8081681462962.51509-CDS-Ecto-sp13_S_contig18817:742..808Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18817 743..808 +
1681462962.525416-CDS-Ecto-sp13_S_contig18817:1103..12801681462962.525416-CDS-Ecto-sp13_S_contig18817:1103..1280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18817 1104..1280 +
1681462962.5346527-CDS-Ecto-sp13_S_contig18817:1476..15891681462962.5346527-CDS-Ecto-sp13_S_contig18817:1476..1589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18817 1477..1589 +
1681462962.5459707-CDS-Ecto-sp13_S_contig18817:2229..24011681462962.5459707-CDS-Ecto-sp13_S_contig18817:2229..2401Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18817 2230..2401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18817.5933.1prot_Ecto-sp13_S_contig18817.5933.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18817 3..2401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18817.5933.1

>prot_Ecto-sp13_S_contig18817.5933.1 ID=prot_Ecto-sp13_S_contig18817.5933.1|Name=mRNA_Ecto-sp13_S_contig18817.5933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp
RLTLAKKDFVRALIQSRKINRKVLLDEDMQDIKVRFYKLMIEYDTHEKAT
FDLCQDFHSIYDTPLVRDKEGEEWKQYLQAAVLFLVLSPNDNHQQDMLFR
VAEYKMLEELPAYKMLVKLFTTPEIIGYPVENQEALESDPCLAAGGPELL
TKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVAGTV
THAVTCAP*
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mRNA from alignment at Ecto-sp13_S_contig18817:3..2401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18817.5933.1 ID=mRNA_Ecto-sp13_S_contig18817.5933.1|Name=mRNA_Ecto-sp13_S_contig18817.5933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18817:3..2401+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCTGACCCTGGCGAAGAAGGACTTCGTAAGGGCCTTAATCCAGAGCCG
TAAGATCAACCGCAAAGTTCTTCTCGACGAAGACATGCAAGACATCAAGG
TGAAACGGGGGTAGAGTCGGTACGTCTGTATGGTCCTTCTGTTTGCTTGT
CTTGGGAGTGAACGAAGGTGAGAGCAACGGGGACCGCGTGCCAGGTACAG
AGACCGCGGGAATGGACAGCCATGCTGCGAGAACCCTACGGGTAGCCAGA
GGAAAGATGTCAGAAAGCCGTATTTTGTGTTGTTTTAGTCAAATTTTGTT
TTTTTGCCGCTCAGAAGGCGTCTGTGGTGTTCGAATGCCGGGATTTTGGT
AAGGCTTTCTTGTAATCATCCCCGTTGAGGGCGGTGGCGTAGGTCGCCCA
GTCGTTCCGCTTGCCTGTCAATGTGTCTTCGCCTTGTTCTAGGCTTCACC
AAAGGGGCGTCTTTGTGTGGATAGGAAGACGGTCGCAGTTGCTGGCATTG
CGTGTGCTGGTTTTACGGAGCGGCTTGTGAATGGATGTACATTTGTTGCT
GCTTGTTTCAGGCAAGCGTCTACGATTCTCTTCCGAAGCAATAAGTGTGG
TGTGTTCGTCGGGGAGGTGTGTTTGACCTACGTGATCGAGTTGATGCATG
GTTCGCTGCTCTGAATCCCCGTGTTATCCTACTGGATGCTCTTGCCTCGG
CGTAGTCTCACCGTGCTTCCAAACGCCCCGTCTATGCCAGGTTCGGTTCT
ACAAGTTGATGATCGAGTACGACACCCACGAGAAGGCTACCTTTGATCTC
TGCCAGGTGGGTGAAGCTGCCAGTTGATGATATGTTGCACGTTGAGACTG
CACGCTTTGGCGAAGGCAACACCATCGCTACGGTTCATGCAGCCAGCATC
ATGCCACACACCATGTCGAACCGTGTAGGATAGGAGTACCATTTCCTTCA
CTCTCTGGCGCCAATCATTTCACACGAGATACCTTGGTCGCTATGTCGCG
CCATTCTCTAAAATTGTACCGTGATCAGTAGCGTACCACGACATGCCACC
GGCACCCATGCTTCAAAACAAGTTTCTTGTTGGACCTGCGTACCCCCCCA
GGACTTCCACTCAATCTACGACACCCCCTTGGTGCGGGACAAGGAGGGGG
AGGAATGGAAGCAGTATCTCCAGGCAGCCGTGTTGTTCCTGGTCCTGTCG
CCAAACGACAACCACCAGCAGGACATGCTGTTCCGAGTCGCCGAGTACAA
GATGCTGGAGGAGCTGCCAGCCTACAAGGTGAGTAGTGACCCATGCCCTT
CCATGGCTGGCGAAGCCTGTAAGATGCATGATAACGGCTGCGCCGCCGTG
GCACAGGAGTGTAGTTTAATATACAGAGTTGCAGGCGTACAATATCATTT
GGTTGATGCACCCTACCGTGTTATTTTCGCCGCACCCCAACATTACCATG
TATTCCGCGCCCCTCCCTTGGCAGATGTTGGTGAAGCTCTTCACCACCCC
CGAGATCATCGGGTACCCCGTCGAGAACCAGGAAGCGCTTGAGTCGGATC
CGTGCCTCGCCGCAGGCGGGCCGGAACTACTCACCAAGTGAGCCTTGGAA
AAATGTACAGTTTTTGCCCGTAGCGTCGAAAGTCATCAAATCAAGTATGA
AGTATTATGGTCATCCGGTAAAAATCCTAACGAGCCACCGCGGTATTGCT
GGTGAGGCGTAATCGTCTTTTGTGTTCGTCCGCAGCAGTGTGAAGATGAA
GGCGAATGAAACTTGTCAACACACAAGGCAAGAAGGCGACTCGATCTAGA
TTTCTTCCGCGGCTGCTCCGGAAGCGTTGGCATGTGTCTGCCGGCGACGT
ACGTGATGTAGTTCATTTCCCCGCTGCTGCCACGTGCCGTACTGAACCGT
TTTTTTTCCTGTTTGTTGTTTCATGCGCCTGGTTGTTTCTGGTGTTTAGT
CCCTCCCTCCTACATTTTCTCTGTTCGTCGAGCTTCTCTCAGTTTTTCGT
TTGTTGTGTAATGTGTGTGTGCTTGGGTTATTAAGGGATCCGCATATTGG
CGTTCCATTTTAGACCTCCACAACACTACATACCAGAAAGGCACGAAGGT
AAGAGCATCAACCCCCCTGTTCTCAACAATCCCGAAGTACTTCAAAGTTT
GAAAATTGTAAGTTTGGAAAAATTACATTCGACGTTGAAAATGTACTTGA
CCCTTGTAAACAACCACCAATCATCAGGTGGAAGGAGGATCTGAAGCTCC
GCATCGTACAGCACAACATCCGCACTGTGGCGTCGTACTACAAGCAGATT
AACACGAAGAGGCTGGCGGACTTGCTGGGTTTGGACGAGAATCAGGCGGA
GCGGAAAGTTGCAGGTACCGTTACACATGCCGTTACGTGCGCCCCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18817:3..2401+

>mRNA_Ecto-sp13_S_contig18817.5933.1 ID=mRNA_Ecto-sp13_S_contig18817.5933.1|Name=mRNA_Ecto-sp13_S_contig18817.5933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18817:3..2401+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCTGACCCTGGCGAAGAAGGACTTCGTAAGGGCCTTAATCCAGAGCCG
TAAGATCAACCGCAAAGTTCTTCTCGACGAAGACATGCAAGACATCAAGG
TTCGGTTCTACAAGTTGATGATCGAGTACGACACCCACGAGAAGGCTACC
TTTGATCTCTGCCAGGACTTCCACTCAATCTACGACACCCCCTTGGTGCG
GGACAAGGAGGGGGAGGAATGGAAGCAGTATCTCCAGGCAGCCGTGTTGT
TCCTGGTCCTGTCGCCAAACGACAACCACCAGCAGGACATGCTGTTCCGA
GTCGCCGAGTACAAGATGCTGGAGGAGCTGCCAGCCTACAAGATGTTGGT
GAAGCTCTTCACCACCCCCGAGATCATCGGGTACCCCGTCGAGAACCAGG
AAGCGCTTGAGTCGGATCCGTGCCTCGCCGCAGGCGGGCCGGAACTACTC
ACCAAGTGGAAGGAGGATCTGAAGCTCCGCATCGTACAGCACAACATCCG
CACTGTGGCGTCGTACTACAAGCAGATTAACACGAAGAGGCTGGCGGACT
TGCTGGGTTTGGACGAGAATCAGGCGGAGCGGAAAGTTGCAGGTACCGTT
ACACATGCCGTTACGTGCGCCCCCTGA
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