mRNA_Ecto-sp13_S_contig18772.5911.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18772.5911.1
Unique NamemRNA_Ecto-sp13_S_contig18772.5911.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18772.5911.1 vs. uniprot
Match: D7FV49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV49_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 6.860e-45
Identity = 83/99 (83.84%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:    1 AEVPQGDDVLPLLRGLSDAWIDAEACALNN---AAADDMHRRGVVVGAGNTGPPRVVRLCAFNFSAVGMPLDTAAGSELQALEVARCLEGVVTALHKIQ 288
            AEVPQGDDVLPLLR LSDAW+DAEACAL N   A  D+MHRRG VVGAGN GPPRVVRLCAFNFS VGMPLDTA GSELQALEV RCL+GVVTALHKI+
Sbjct: 1423 AEVPQGDDVLPLLRDLSDAWMDAEACALKNTDDADDDEMHRRGAVVGAGNAGPPRVVRLCAFNFSTVGMPLDTATGSELQALEVVRCLQGVVTALHKIE 1521
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BLAST of mRNA_Ecto-sp13_S_contig18772.5911.1 vs. uniprot
Match: A0A6H5JD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD11_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 9.380e-45
Identity = 84/101 (83.17%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 AEVPQGDDVLPLLRGLSDAWIDAEACALNNA-----AADDMHRRGVVVGAGNTGPPRVVRLCAFNFSAVGMPLDTAAGSELQALEVARCLEGVVTALHKIQ 288
            A+VPQGDDVL LLR LSDAWIDAEACAL NA      AD+MHRRG VVGAGN GPPRVVRLCAFNFS VGMPLDTAAGSEL ALEV RCL+GVVTALHKIQ
Sbjct: 1934 ADVPQGDDVLQLLRDLSDAWIDAEACALKNADAAAATADEMHRRGAVVGAGNAGPPRVVRLCAFNFSTVGMPLDTAAGSELHALEVVRCLKGVVTALHKIQ 2034
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18772.5911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV49_ECTSI6.860e-4583.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD11_9PHAE9.380e-4583.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18772contigEcto-sp13_S_contig18772:1962..3264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size290
Hectar predicted targeting categoryother localisation
Exons3
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.642764-CDS-Ecto-sp13_S_contig18772:1961..20971681462960.642764-CDS-Ecto-sp13_S_contig18772:1961..2097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18772 1962..2097 +
1681462960.653133-CDS-Ecto-sp13_S_contig18772:2840..29361681462960.653133-CDS-Ecto-sp13_S_contig18772:2840..2936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18772 2841..2936 +
1681462960.6624722-CDS-Ecto-sp13_S_contig18772:3208..32641681462960.6624722-CDS-Ecto-sp13_S_contig18772:3208..3264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18772 3209..3264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18772.5911.1prot_Ecto-sp13_S_contig18772.5911.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18772 1962..3264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18772.5911.1

>prot_Ecto-sp13_S_contig18772.5911.1 ID=prot_Ecto-sp13_S_contig18772.5911.1|Name=mRNA_Ecto-sp13_S_contig18772.5911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
AEVPQGDDVLPLLRGLSDAWIDAEACALNNAAADDMHRRGVVVGAGNTGP
PRVVRLCAFNFSAVGMPLDTAAGSELQALEVARCLEGVVTALHKIQ
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mRNA from alignment at Ecto-sp13_S_contig18772:1962..3264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18772.5911.1 ID=mRNA_Ecto-sp13_S_contig18772.5911.1|Name=mRNA_Ecto-sp13_S_contig18772.5911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18772:1962..3264+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGGTGCCGCAAGGCGACGACGTCCTGCCGCTCCTGCGTGGGCTGTC
GGACGCGTGGATCGACGCGGAAGCGTGCGCCCTCAACAACGCCGCCGCCG
ACGACATGCACCGGAGGGGCGTCGTGGTGGGGGCAGGTGCGAGGTGGCGT
TTAGCTCCCGGCGTGTGTTTTGTGTTGAGGCGTTGACCGAGCTAGCCGGG
GTTAGGACCTGGGGATGTTTCGCGTTTATTTGTTAAGGTGTATGTCGTAG
AGTAGAGGGTACGCAGGTGGTTTTGCGCCCGCTTCCCGCCGCCGCCCTCG
ACCTGTGAGAACCAAGGTGTGCCTTACGATAGTTCTGTCGGCTATGGCAC
TCTACTCGGCAGCCCGTGTGTGGGCAACCTTGTTCATACCCCTGTCGGTA
TTATATACCGGGACAGGTGGACCACCTGCCGTTTTCCGCCATTTTTTTGG
GAGGATGAAACTCGACAGAATGAACTCAACAAGCAGCAGTATTGTGTGAC
CAGAGTTTGAGTTTCAGGAAAGTAATGGACACGGTTGAGATTTCGTCAAC
ACTTGCAAGACGACCAACACTCGCACCGACAGATGCTGCCGCCTGCTGTG
CAATGAAACCCCCGGCGACTAACCACCGCACCCCCCCCCCCTGCCCACCC
CCCCGCGAACAAGTTTAAGATTGTTTCCAACCCGCCCACCGCACCAGCAG
CACGGATAGCAGAGGCAACATGCCGACGAGCGGCAAAACAGTACAATGCA
GCCTTGGCAATCAACCCAACGCGGCGCTTGTCGACAACCCTGTAAGCTTG
CTCGAGGTATCGACGTGTCCATTGTTCCACACCCCGTTGCCTCCCCCACT
CCCCGCGTGTTGTGCCTCGGCCCCCGCAGGCAATACCGGGCCGCCTAGAG
TCGTGCGCCTGTGCGCGTTCAACTTTTCCGCGGTCGGCATGCCATTGGAC
ACTGCCGCCGGATCGGAGCTCCAAGGTATGCACATGTAGAGCTCACTTGA
TGCGATCGCGCTTGACGTGGTTGGCGTCTCTTTTGTGGCGCGTCTTTTTG
GGCACTGAGTTGTCATAAGGCTTGCACTAGTAGGGTACAGTAGTTCTTTA
CACCCGCCTCCCTAGTTCCGTTTGGTGTTGGTCCGCGCTTAGAGGTTGAA
CTCGCCTGTTTTCTTTGTTCTTGCAGATTTTTGTTGCGCTTTGTTGATTT
TTTCGTTTTTTTTCTGCTCGTTCCTCTATGGCAATATGCACGCGCAGCGC
TGGAGGTAGCGCGGTGCCTGGAAGGCGTCGTCACTGCCCTGCACAAAATA
CAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18772:1962..3264+

>mRNA_Ecto-sp13_S_contig18772.5911.1 ID=mRNA_Ecto-sp13_S_contig18772.5911.1|Name=mRNA_Ecto-sp13_S_contig18772.5911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18772:1962..3264+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGGTGCCGCAAGGCGACGACGTCCTGCCGCTCCTGCGTGGGCTGTC
GGACGCGTGGATCGACGCGGAAGCGTGCGCCCTCAACAACGCCGCCGCCG
ACGACATGCACCGGAGGGGCGTCGTGGTGGGGGCAGGCAATACCGGGCCG
CCTAGAGTCGTGCGCCTGTGCGCGTTCAACTTTTCCGCGGTCGGCATGCC
ATTGGACACTGCCGCCGGATCGGAGCTCCAAGCGCTGGAGGTAGCGCGGT
GCCTGGAAGGCGTCGTCACTGCCCTGCACAAAATACAA
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