mRNA_Ecto-sp13_S_contig18763.5907.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18763.5907.1
Unique NamemRNA_Ecto-sp13_S_contig18763.5907.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Match: D7FNB2_ECTSI (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB2_ECTSI)

HSP 1 Score: 763 bits (1971), Expect = 3.180e-261
Identity = 430/506 (84.98%), Postives = 443/506 (87.55%), Query Frame = 1 
Query:   10 QISWFMAALCLDARRVSQGRLDLAPWMTLPEDHDDSDSRFWYSSPESGSVRDLTVPLLGFQSPVATASAAVGRWRRRRTGHRLSSPFACRHRSAEGRTSPTKTGDTDWLSPYHTSTRRQPAEEEAPRSAAVARGGYAXXXXXXXXXXXXXLYDSDDDSITGREHLLSVASEVGSGSEANPALLFGTPTRRVVSTSGRGSRAAAMARRRTTGCDGNGRGVVDSAGKGGWALDRGARRGWFDDPSDYCEDTAGERDSIRTTMTTLPTLAHEVSASLGEASPSMSTIDDASTTLSNGGRANGSHSCDNGAGNSTEDKGSTXXXXXXXXXXXXTINNSKPTSGIDMGHARSSSSSSVSPSRQKHGDGEAVAPFLLGGNVVEGYVSLPSDQPPRRGSGDDRGGRGAGLLLAGPPPEDNEEGFVGDGLSFESAGGAGLSIFREQLYEEGRGKGALASRFIERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYLQ 1527
            QISWFMAALCLDARRVSQGRLDLAPWMTLPE+ DDSD RFWYSSPESGSVRDLTVPLLGFQSP ATA+AAVGRWRRRRTG RLSSP ACRHRS EGRTSPTKTGDTDWLSPYHTSTRRQPAE               XXXXXXXXXXXXX YDSDDDS+TGREHLLSVASE+GSGSEANPALLFGTPTRR V TSGRGSRAAA+ARRRTTGCDGNG+GVVDSAGKGGW LDRGARRGWFDDPSDYC++TAGERDSIRTTMTTLPTLAHEVSASLGEASPSMSTIDDASTTLSN G+ANG   CDNGAGNST++K ST        XXXX     KPTSGID GHA SS SSSVSPSR K GDG  VAPFLLGGNVVEGY+SLPS+QPPRRGSGDDRGGRGAGL           EGFVGDGLSFES GGAGLSIFREQLYEEGRGKGALASRFIERYYLPALFSRGGKA TLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYLQ
Sbjct:  499 QISWFMAALCLDARRVSQGRLDLAPWMTLPEEDDDSD-RFWYSSPESGSVRDLTVPLLGFQSPAATAAAAVGRWRRRRTGRRLSSPLACRHRSKEGRTSPTKTGDTDWLSPYHTSTRRQPAEXXX---XXXXXXXXXXXXXXXXXXXXXXXYDSDDDSVTGREHLLSVASEIGSGSEANPALLFGTPTRRAVPTSGRGSRAAAIARRRTTGCDGNGKGVVDSAGKGGWTLDRGARRGWFDDPSDYCDNTAGERDSIRTTMTTLPTLAHEVSASLGEASPSMSTIDDASTTLSNSGQANG---CDNGAGNSTDNKDSTSKTDGNGSXXXXXXX--KPTSGIDRGHA-SSXSSSVSPSRPKDGDGGTVAPFLLGGNVVEGYLSLPSNQPPRRGSGDDRGGRGAGLXXXXXXXXXXXEGFVGDGLSFESVGGAGLSIFREQLYEEGRGKGALASRFIERYYLPALFSRGGKALTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYLQ 994
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BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Match: A0A835YXX1_9STRA (SSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.300e-8
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1 
Query: 1366 FIERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYLQ 1527
            F+ER+YLPAL SRGGKA TL  AAAL   G +G   + +GLEPQLAAP D  LQ
Sbjct:  800 FMERWYLPALLSRGGKAVTLLAAAALVACGGVGARRMPLGLEPQLAAPLDSPLQ 853
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BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Match: A0A4D9CZ93_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ93_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.280e-5
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1 
Query: 1369 IERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYL 1524
            +++ YLP L SR GK   + V   L  LG  G+  L++GLEPQLAAP+DFYL
Sbjct:    1 MDKGYLPCLMSRAGKIAVVVVGLLLLMLGLWGITTLELGLEPQLAAPSDFYL 52
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BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Match: K8YSC8_NANGC (Niemann-Pick C1 protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSC8_NANGC)

HSP 1 Score: 56.6 bits (135), Expect = 9.200e-5
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 
Query: 1351 ALASRFIERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYL 1524
            A  +R +++ YLP L SR GK     +   L  LG  G+  L++GLEPQLAAP+DFYL
Sbjct:  219 AFWNRCMDKGYLPCLMSRAGKTAVGGLGLLLLILGLWGITTLELGLEPQLAAPSDFYL 276
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BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Match: W7TJL6_9STRA (Patched family protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJL6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.420e-5
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 
Query: 1351 ALASRFIERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYL 1524
            A  +R +++ YLP L SR GK     +   L  LG  G+  L++GLEPQLAAP+DFYL
Sbjct:  263 AFWNRCMDKGYLPCLMSRAGKTAVGGLGLLLLILGLWGITTLELGLEPQLAAPSDFYL 320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FNB2_ECTSI3.180e-26184.98SSD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YXX1_9STRA6.300e-862.96SSD domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9CZ93_9STRA4.280e-551.92Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YSC8_NANGC9.200e-548.28Niemann-Pick C1 protein n=1 Tax=Nannochloropsis ga... [more]
W7TJL6_9STRA9.420e-548.28Patched family protein (Fragment) n=1 Tax=Nannochl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18763contigEcto-sp13_S_contig18763:161..2940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score776.2
Seed ortholog evalue9.6e-222
Seed eggNOG ortholog2880.D7FNB2
Model size1527
KEGG koko:K12385
KEGG TC2.A.6.6
KEGG Pathwayko04142,ko04979,map04142,map04979
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.cellular response to sterol depletion
EggNOG OGsKOG1933@1,KOG1933@2759
Ec32 ortholog descriptionPatched
Ec32 orthologEc-24_000090.1
Cds size1527
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.3793392-CDS-Ecto-sp13_S_contig18763:160..3231681462960.3793392-CDS-Ecto-sp13_S_contig18763:160..323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18763 161..323 -
1681462960.38965-CDS-Ecto-sp13_S_contig18763:1110..23521681462960.38965-CDS-Ecto-sp13_S_contig18763:1110..2352Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18763 1111..2352 -
1681462960.398292-CDS-Ecto-sp13_S_contig18763:2818..29401681462960.398292-CDS-Ecto-sp13_S_contig18763:2818..2940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18763 2819..2940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18763.5907.1prot_Ecto-sp13_S_contig18763.5907.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18763 161..2940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18763.5907.1

>prot_Ecto-sp13_S_contig18763.5907.1 ID=prot_Ecto-sp13_S_contig18763.5907.1|Name=mRNA_Ecto-sp13_S_contig18763.5907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=509bp
MPWQISWFMAALCLDARRVSQGRLDLAPWMTLPEDHDDSDSRFWYSSPES
GSVRDLTVPLLGFQSPVATASAAVGRWRRRRTGHRLSSPFACRHRSAEGR
TSPTKTGDTDWLSPYHTSTRRQPAEEEAPRSAAVARGGYARSEGGGGGGG
GGGLYDSDDDSITGREHLLSVASEVGSGSEANPALLFGTPTRRVVSTSGR
GSRAAAMARRRTTGCDGNGRGVVDSAGKGGWALDRGARRGWFDDPSDYCE
DTAGERDSIRTTMTTLPTLAHEVSASLGEASPSMSTIDDASTTLSNGGRA
NGSHSCDNGAGNSTEDKGSTSKTNGNGNGSSNTINNSKPTSGIDMGHARS
SSSSSVSPSRQKHGDGEAVAPFLLGGNVVEGYVSLPSDQPPRRGSGDDRG
GRGAGLLLAGPPPEDNEEGFVGDGLSFESAGGAGLSIFREQLYEEGRGKG
ALASRFIERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQL
AAPTDFYLQ
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mRNA from alignment at Ecto-sp13_S_contig18763:161..2940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18763.5907.1 ID=mRNA_Ecto-sp13_S_contig18763.5907.1|Name=mRNA_Ecto-sp13_S_contig18763.5907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18763:161..2940- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTGGCAGATTTCGTGGTTCATGGCGGCACTGTGCCTTGATGCAAG
AAGAGTCAGCCAAGGACGGCTAGACCTAGCCCCGTGGATGACGCTGCCAG
AGGACCACGATGATAGCGATAGGTGCGGTGCAGCTTGCCTCTCTGTAGGT
TCAGTCTATGTATGCTCCATGGCAAGTAATTGGCGCGACGCACATTGCCT
GGTGTGCGTGGTATGGTGCATGGTACTTGCTGAAGGTGGGCTACAATACA
CAGCCGCACGTACAGCCCGAAAGCCCACACGATGACACGGCAGTATGTGA
TAAACCGAGTATCATATTTCGCTCCAACAGAGCGGCACCTTGAACGGAAT
TAGGAGATGGCATATTCATGTTTCTGTACATGAAAAGATGACAGCCTTCT
TCCTGCGCGATTGTGGTTTTTTAGTTCACCCTCGGCGTTTGTTTTTGCCA
CCCAGAAGCAAACGCACGCAACGCCGCTTGAAAAGACAACCCGACCGATC
GATAGGTAGATAGATCCATCACCCGTTGCTCTTGTACTAGGGGGTTTTAT
TGAATCGGCCATGTCGCCACTGCCGCTTTCTTGGCGAGCAGGTTCTGGTA
CAGCTCTCCGGAGAGCGGGTCCGTGCGAGATCTGACCGTCCCTCTGCTGG
GTTTCCAGTCCCCGGTGGCGACGGCGTCGGCAGCGGTGGGGCGGTGGCGG
AGGCGGAGGACGGGACACCGCCTCTCGTCCCCTTTCGCCTGCCGCCACAG
GTCTGCGGAGGGGCGCACGTCTCCCACAAAAACGGGAGACACGGACTGGC
TGTCCCCGTATCACACCTCCACCAGGAGGCAACCGGCAGAAGAAGAGGCC
CCGCGGTCTGCTGCGGTGGCGCGGGGGGGGTATGCTCGAAGCGAAGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCCTCTACGATAGCGATGACGACAGCA
TTACCGGCCGCGAACACCTCTTGTCCGTCGCCTCCGAGGTTGGGTCCGGT
AGCGAAGCTAACCCCGCGCTTCTCTTCGGGACGCCCACCCGGCGAGTTGT
CTCGACCTCAGGGAGGGGTAGCAGAGCAGCGGCTATGGCTAGAAGAAGAA
CGACGGGTTGCGATGGTAACGGTAGGGGTGTAGTAGATTCTGCGGGGAAA
GGGGGATGGGCGTTGGATCGCGGGGCGCGGCGCGGGTGGTTTGACGACCC
GAGCGATTATTGCGAGGACACGGCGGGGGAGCGGGACTCGATACGGACGA
CGATGACGACGTTGCCGACGTTGGCGCACGAGGTGTCCGCCTCCCTTGGG
GAGGCGAGTCCGTCGATGTCGACCATTGATGACGCCAGCACTACGCTGTC
GAACGGCGGGCGAGCAAACGGTAGCCACAGCTGCGACAATGGTGCAGGCA
ATAGCACCGAGGACAAAGGCAGCACTAGCAAAACCAACGGCAACGGCAAC
GGCAGCAGCAACACTATCAACAACAGCAAGCCCACGAGCGGCATCGACAT
GGGACACGCCAGAAGCAGCAGCAGCAGCAGCGTCAGCCCCTCTCGGCAAA
AGCACGGGGACGGTGAGGCGGTCGCGCCGTTCCTCCTCGGAGGAAACGTG
GTAGAAGGGTACGTCTCTCTACCGTCCGACCAGCCCCCCCGCCGTGGCTC
GGGCGACGATCGGGGTGGGAGGGGGGCGGGTTTGCTGCTGGCGGGCCCCC
CGCCGGAAGACAACGAAGAGGGCTTCGTCGGGGATGGTCTGTCTTTCGAA
AGCGCCGGGGGCGCGGGTTTGTCTATTTTCCGGGAGCAGCTGTACGAGGA
GGGGAGGGGCAAGGGCGCCTTGGCGTCAAGGTGAGCGAGCACAAACGCTG
TCCTTCTTTTCGTCTGCGCGCTTTTCTCGAGGTCGTCCTAGTTTGCGCTC
TTTTCCGTTTGAGGATGTATAGAACCCGCGATAGCGCTTTGTCATGTACA
TGCAGCGTCGTTAGATGGGTTGGGGATAGGACGAAAATGTGTCCCGTTGT
TCTTGGTTTCTCGTATATCTCGGAAGGCTGGGTATACATGGCCTATCATT
CGTGTGCGCGCGAACGTTGTGAACGAAGTCGTTGGAGGCAGTATTTTCTC
GTGGGTGTGTTTGTGTCCTTATTTTCTCCAGCATCGACCGTGCTTATCGG
TTGACTCAATGGACAGACGTCCAGTAGCCCTCGCGAAGATATCCAGCTAC
GTGACCCTCCAGTAGGGGAGACGGGGTGGGTGGGAGGGATACGGATAACG
AAATATCCCCCTCTGTTCCTATCGACTTGCGGACCCTTCGGGTCCACTTT
ATTTAGTATACCTTATTTGGGTAAGCTTACCTGTGACCACGCGAATCGAC
CGCGTCAAGTGTCAAGACTACACCGGCTAGAAGAAGGTACTGGGCAGGGA
GATCGGAACGGTTTTTGTTGTAAGGACAACCACAAGAACAACAACTTTCC
TAGCGAAGGCCGTCCCAGACGTCAGACTCAGTGCGTGTACAAGCAACAAT
TAGTGTGCAGGTGTATACAGGTGTTTGTTTGATTTGCACAGGCCGCAAGC
GCTAACCGGGTATTCCACGAAAACTCACGAGTCTTTCGTGTTTTCGGACG
TTTTCGTGCGATTAAAGGTTCATAGAGCGGTATTACCTGCCAGCCCTATT
CTCGAGAGGGGGGAAGGCGTTCACGCTGGCCGTGGCTGCTGCTCTTGCGT
TCCTGGGGTGCTTGGGCATGCACGGGCTGCAGATGGGGCTGGAGCCGCAG
CTCGCGGCTCCCACGGACTTTTACCTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18763:161..2940-

>mRNA_Ecto-sp13_S_contig18763.5907.1 ID=mRNA_Ecto-sp13_S_contig18763.5907.1|Name=mRNA_Ecto-sp13_S_contig18763.5907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1527bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18763:161..2940- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTGGCAGATTTCGTGGTTCATGGCGGCACTGTGCCTTGATGCAAG
AAGAGTCAGCCAAGGACGGCTAGACCTAGCCCCGTGGATGACGCTGCCAG
AGGACCACGATGATAGCGATAGCAGGTTCTGGTACAGCTCTCCGGAGAGC
GGGTCCGTGCGAGATCTGACCGTCCCTCTGCTGGGTTTCCAGTCCCCGGT
GGCGACGGCGTCGGCAGCGGTGGGGCGGTGGCGGAGGCGGAGGACGGGAC
ACCGCCTCTCGTCCCCTTTCGCCTGCCGCCACAGGTCTGCGGAGGGGCGC
ACGTCTCCCACAAAAACGGGAGACACGGACTGGCTGTCCCCGTATCACAC
CTCCACCAGGAGGCAACCGGCAGAAGAAGAGGCCCCGCGGTCTGCTGCGG
TGGCGCGGGGGGGGTATGCTCGAAGCGAAGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCCTCTACGATAGCGATGACGACAGCATTACCGGCCGCGAACA
CCTCTTGTCCGTCGCCTCCGAGGTTGGGTCCGGTAGCGAAGCTAACCCCG
CGCTTCTCTTCGGGACGCCCACCCGGCGAGTTGTCTCGACCTCAGGGAGG
GGTAGCAGAGCAGCGGCTATGGCTAGAAGAAGAACGACGGGTTGCGATGG
TAACGGTAGGGGTGTAGTAGATTCTGCGGGGAAAGGGGGATGGGCGTTGG
ATCGCGGGGCGCGGCGCGGGTGGTTTGACGACCCGAGCGATTATTGCGAG
GACACGGCGGGGGAGCGGGACTCGATACGGACGACGATGACGACGTTGCC
GACGTTGGCGCACGAGGTGTCCGCCTCCCTTGGGGAGGCGAGTCCGTCGA
TGTCGACCATTGATGACGCCAGCACTACGCTGTCGAACGGCGGGCGAGCA
AACGGTAGCCACAGCTGCGACAATGGTGCAGGCAATAGCACCGAGGACAA
AGGCAGCACTAGCAAAACCAACGGCAACGGCAACGGCAGCAGCAACACTA
TCAACAACAGCAAGCCCACGAGCGGCATCGACATGGGACACGCCAGAAGC
AGCAGCAGCAGCAGCGTCAGCCCCTCTCGGCAAAAGCACGGGGACGGTGA
GGCGGTCGCGCCGTTCCTCCTCGGAGGAAACGTGGTAGAAGGGTACGTCT
CTCTACCGTCCGACCAGCCCCCCCGCCGTGGCTCGGGCGACGATCGGGGT
GGGAGGGGGGCGGGTTTGCTGCTGGCGGGCCCCCCGCCGGAAGACAACGA
AGAGGGCTTCGTCGGGGATGGTCTGTCTTTCGAAAGCGCCGGGGGCGCGG
GTTTGTCTATTTTCCGGGAGCAGCTGTACGAGGAGGGGAGGGGCAAGGGC
GCCTTGGCGTCAAGGTTCATAGAGCGGTATTACCTGCCAGCCCTATTCTC
GAGAGGGGGGAAGGCGTTCACGCTGGCCGTGGCTGCTGCTCTTGCGTTCC
TGGGGTGCTTGGGCATGCACGGGCTGCAGATGGGGCTGGAGCCGCAGCTC
GCGGCTCCCACGGACTTTTACCTCCAG
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