prot_Ecto-sp13_S_contig18763.5907.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18763.5907.1
Unique Nameprot_Ecto-sp13_S_contig18763.5907.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length509
Homology
BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Match: D7FNB2_ECTSI (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB2_ECTSI)

HSP 1 Score: 763 bits (1971), Expect = 3.180e-261
Identity = 430/506 (84.98%), Postives = 443/506 (87.55%), Query Frame = 0
Query:    4 QISWFMAALCLDARRVSQGRLDLAPWMTLPEDHDDSDSRFWYSSPESGSVRDLTVPLLGFQSPVATASAAVGRWRRRRTGHRLSSPFACRHRSAEGRTSPTKTGDTDWLSPYHTSTRRQPAEEEAPRSAAVARGGYAXXXXXXXXXXXXXLYDSDDDSITGREHLLSVASEVGSGSEANPALLFGTPTRRVVSTSGRGSRAAAMARRRTTGCDGNGRGVVDSAGKGGWALDRGARRGWFDDPSDYCEDTAGERDSIRTTMTTLPTLAHEVSASLGEASPSMSTIDDASTTLSNGGRANGSHSCDNGAGNSTEDKGSTXXXXXXXXXXXXTINNSKPTSGIDMGHARSSSSSSVSPSRQKHGDGEAVAPFLLGGNVVEGYVSLPSDQPPRRGSGDDRGGRGAGLLLAGPPPEDNEEGFVGDGLSFESAGGAGLSIFREQLYEEGRGKGALASRFIERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYLQ 509
            QISWFMAALCLDARRVSQGRLDLAPWMTLPE+ DDSD RFWYSSPESGSVRDLTVPLLGFQSP ATA+AAVGRWRRRRTG RLSSP ACRHRS EGRTSPTKTGDTDWLSPYHTSTRRQPAE               XXXXXXXXXXXXX YDSDDDS+TGREHLLSVASE+GSGSEANPALLFGTPTRR V TSGRGSRAAA+ARRRTTGCDGNG+GVVDSAGKGGW LDRGARRGWFDDPSDYC++TAGERDSIRTTMTTLPTLAHEVSASLGEASPSMSTIDDASTTLSN G+ANG   CDNGAGNST++K ST        XXXX     KPTSGID GHA SS SSSVSPSR K GDG  VAPFLLGGNVVEGY+SLPS+QPPRRGSGDDRGGRGAGL           EGFVGDGLSFES GGAGLSIFREQLYEEGRGKGALASRFIERYYLPALFSRGGKA TLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYLQ
Sbjct:  499 QISWFMAALCLDARRVSQGRLDLAPWMTLPEEDDDSD-RFWYSSPESGSVRDLTVPLLGFQSPAATAAAAVGRWRRRRTGRRLSSPLACRHRSKEGRTSPTKTGDTDWLSPYHTSTRRQPAEXXX---XXXXXXXXXXXXXXXXXXXXXXXYDSDDDSVTGREHLLSVASEIGSGSEANPALLFGTPTRRAVPTSGRGSRAAAIARRRTTGCDGNGKGVVDSAGKGGWTLDRGARRGWFDDPSDYCDNTAGERDSIRTTMTTLPTLAHEVSASLGEASPSMSTIDDASTTLSNSGQANG---CDNGAGNSTDNKDSTSKTDGNGSXXXXXXX--KPTSGIDRGHA-SSXSSSVSPSRPKDGDGGTVAPFLLGGNVVEGYLSLPSNQPPRRGSGDDRGGRGAGLXXXXXXXXXXXEGFVGDGLSFESVGGAGLSIFREQLYEEGRGKGALASRFIERYYLPALFSRGGKALTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYLQ 994          
BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Match: A0A835YXX1_9STRA (SSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.300e-8
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0
Query:  456 FIERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYLQ 509
            F+ER+YLPAL SRGGKA TL  AAAL   G +G   + +GLEPQLAAP D  LQ
Sbjct:  800 FMERWYLPALLSRGGKAVTLLAAAALVACGGVGARRMPLGLEPQLAAPLDSPLQ 853          
BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Match: A0A4D9CZ93_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ93_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.280e-5
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0
Query:  457 IERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYL 508
            +++ YLP L SR GK   + V   L  LG  G+  L++GLEPQLAAP+DFYL
Sbjct:    1 MDKGYLPCLMSRAGKIAVVVVGLLLLMLGLWGITTLELGLEPQLAAPSDFYL 52          
BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Match: K8YSC8_NANGC (Niemann-Pick C1 protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSC8_NANGC)

HSP 1 Score: 56.6 bits (135), Expect = 9.200e-5
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0
Query:  451 ALASRFIERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYL 508
            A  +R +++ YLP L SR GK     +   L  LG  G+  L++GLEPQLAAP+DFYL
Sbjct:  219 AFWNRCMDKGYLPCLMSRAGKTAVGGLGLLLLILGLWGITTLELGLEPQLAAPSDFYL 276          
BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Match: W7TJL6_9STRA (Patched family protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJL6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.420e-5
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0
Query:  451 ALASRFIERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYL 508
            A  +R +++ YLP L SR GK     +   L  LG  G+  L++GLEPQLAAP+DFYL
Sbjct:  263 AFWNRCMDKGYLPCLMSRAGKTAVGGLGLLLLILGLWGITTLELGLEPQLAAPSDFYL 320          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18763.5907.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FNB2_ECTSI3.180e-26184.98SSD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YXX1_9STRA6.300e-862.96SSD domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9CZ93_9STRA4.280e-551.92Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YSC8_NANGC9.200e-548.28Niemann-Pick C1 protein n=1 Tax=Nannochloropsis ga... [more]
W7TJL6_9STRA9.420e-548.28Patched family protein (Fragment) n=1 Tax=Nannochl... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 472..492
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 493..509
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..55
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..75
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 76..471

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18763contigEcto-sp13_S_contig18763:161..2940 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18763.5907.1mRNA_Ecto-sp13_S_contig18763.5907.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18763 161..2940 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18763.5907.1 ID=prot_Ecto-sp13_S_contig18763.5907.1|Name=mRNA_Ecto-sp13_S_contig18763.5907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=509bp
MPWQISWFMAALCLDARRVSQGRLDLAPWMTLPEDHDDSDSRFWYSSPES
GSVRDLTVPLLGFQSPVATASAAVGRWRRRRTGHRLSSPFACRHRSAEGR
TSPTKTGDTDWLSPYHTSTRRQPAEEEAPRSAAVARGGYARSEGGGGGGG
GGGLYDSDDDSITGREHLLSVASEVGSGSEANPALLFGTPTRRVVSTSGR
GSRAAAMARRRTTGCDGNGRGVVDSAGKGGWALDRGARRGWFDDPSDYCE
DTAGERDSIRTTMTTLPTLAHEVSASLGEASPSMSTIDDASTTLSNGGRA
NGSHSCDNGAGNSTEDKGSTSKTNGNGNGSSNTINNSKPTSGIDMGHARS
SSSSSVSPSRQKHGDGEAVAPFLLGGNVVEGYVSLPSDQPPRRGSGDDRG
GRGAGLLLAGPPPEDNEEGFVGDGLSFESAGGAGLSIFREQLYEEGRGKG
ALASRFIERYYLPALFSRGGKAFTLAVAAALAFLGCLGMHGLQMGLEPQL
AAPTDFYLQ
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