mRNA_Ecto-sp13_S_contig1875.5902.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1875.5902.1
Unique NamemRNA_Ecto-sp13_S_contig1875.5902.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1875.5902.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.160e-44
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    4 QILEHCAAEQSMRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWKS 255
            Q++    + +S+RADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWKS
Sbjct:  433 QVVRSFTSPKSVRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWKS 516
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BLAST of mRNA_Ecto-sp13_S_contig1875.5902.1 vs. uniprot
Match: A0A7S3XY04_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY04_HETAK)

HSP 1 Score: 115 bits (288), Expect = 2.330e-31
Identity = 48/84 (57.14%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:    4 QILEHCAAEQSMRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWKS 255
            Q+++  ++ +++  DF  A +SP+G+WVYCAGEDG L+CF+ AT ++++ LKV++KE+IGLAHHPHRNL+ATFS+EG LKLWK+
Sbjct:   48 QVVKTFSSGKAVGGDFAAAAVSPQGKWVYCAGEDGVLYCFNVATGQLDQVLKVADKEVIGLAHHPHRNLVATFSDEGALKLWKA 131
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BLAST of mRNA_Ecto-sp13_S_contig1875.5902.1 vs. uniprot
Match: UPI00072E552E (WD40 repeat-containing protein SMU1-like n=1 Tax=Poecilia latipinna TaxID=48699 RepID=UPI00072E552E)

HSP 1 Score: 108 bits (271), Expect = 3.170e-29
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    1 PQILEHCAAEQSMRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWK 252
            PQ ++   +EQ  RA F C  +SP G W+YC GED  L+CF+  T  +EKTL V +K++IG+AHHPH NL+AT+S +GLL+LWK
Sbjct:   11 PQTVKTFCSEQPERAGFVCCAVSPHGEWIYCVGEDSVLYCFNYTTGRLEKTLTVHDKDVIGIAHHPHENLIATYSEDGLLRLWK 94
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BLAST of mRNA_Ecto-sp13_S_contig1875.5902.1 vs. uniprot
Match: A0A2G9NCG6_LITCT (Smu-1 suppressor of mec-8 and unc-52 protein homolog n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9NCG6_LITCT)

HSP 1 Score: 104 bits (259), Expect = 1.700e-27
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    4 QILEHCAAEQSMRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWK 252
            QI+   ++ +    DF C  LSP+G W+YC GED  L+CF   T ++E+TL V EK++IG+AHHPH+NL+ T+S +GLLKLWK
Sbjct:    4 QIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWK 86
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BLAST of mRNA_Ecto-sp13_S_contig1875.5902.1 vs. uniprot
Match: UPI0012ED6B31 (WD40 repeat-containing protein SMU1-like n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012ED6B31)

HSP 1 Score: 107 bits (266), Expect = 1.960e-27
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    4 QILEHCAAEQSMRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWK 252
            Q ++   +E+  +ADF C  LSP+G W+YC GED  L+CF+  T  ++KTL V EK++IG+AHHPH NL+AT+S +GLL+LWK
Sbjct:   97 QTVKTFCSERKEKADFVCCTLSPRGEWIYCVGEDLVLYCFNYTTGRLQKTLTVHEKDVIGIAHHPHENLIATYSEDGLLRLWK 179
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BLAST of mRNA_Ecto-sp13_S_contig1875.5902.1 vs. uniprot
Match: E4Z029_OIKDI (Smu-1 suppressor of mec-8 and unc-52 protein homolog (Fragment) n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4Z029_OIKDI)

HSP 1 Score: 103 bits (257), Expect = 3.620e-27
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    7 ILEHCAAEQSMRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWK 252
            +L  C   +    DF C+ LSP+G W+YC GED  L+CF   + ++E+TL V EK++IG++HHPH NL+ATFS +GLLKLWK
Sbjct:    7 LLSFCFQGKKQGGDFVCSTLSPRGEWLYCIGEDRVLYCFSTHSGKLERTLIVHEKDVIGISHHPHSNLIATFSEDGLLKLWK 88
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BLAST of mRNA_Ecto-sp13_S_contig1875.5902.1 vs. uniprot
Match: UPI000549DDA6 (WD40 repeat-containing protein SMU1 n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=UPI000549DDA6)

HSP 1 Score: 106 bits (264), Expect = 4.700e-27
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    4 QILEHCAAEQSMRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWK 252
            QI+   ++ +    DF C  LSP+G W+YC GED  L+CF   T ++E+TL V EK++IG+AHHPH+NL+AT+S +GLLKLWK
Sbjct:  104 QIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWK 186
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BLAST of mRNA_Ecto-sp13_S_contig1875.5902.1 vs. uniprot
Match: A0A4Z2E2F5_9TELE (Smu-1 suppressor of mec-8 and unc-52 protein homolog n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A4Z2E2F5_9TELE)

HSP 1 Score: 104 bits (260), Expect = 5.240e-27
Identity = 43/83 (51.81%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    4 QILEHCAAEQSMRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWK 252
            QI+   ++ +    DF C  LSP+G W+YC GED  L+CF   T ++E+TL V EK++IG+AHHPH+NL++T+S +GLLKLWK
Sbjct:   56 QIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLISTYSEDGLLKLWK 138
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BLAST of mRNA_Ecto-sp13_S_contig1875.5902.1 vs. uniprot
Match: A0A212CMV6_CEREH (WD40 repeat-containing protein SMU1 n=1 Tax=Cervus elaphus hippelaphus TaxID=46360 RepID=A0A212CMV6_CEREH)

HSP 1 Score: 106 bits (264), Expect = 1.110e-26
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    4 QILEHCAAEQSMRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWK 252
            QI+   ++ +    DF C  LSP+G W+YC GED  L+CF   T ++E+TL V EK++IG+AHHPH+NL+AT+S +GLLKLWK
Sbjct:  139 QIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWK 221
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BLAST of mRNA_Ecto-sp13_S_contig1875.5902.1 vs. uniprot
Match: UPI001BB230D8 (WD40 repeat-containing protein SMU1-like isoform X1 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB230D8)

HSP 1 Score: 108 bits (269), Expect = 1.590e-26
Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    4 QILEHCAAEQSMRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEKTLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWKS 255
            QI+   ++ +    DFTC+CLSP+G W+YC GED  L+CF  +T ++E+TL V EK++IG+  HPH NLLAT+S +GLLKLWKS
Sbjct:  243 QIVRSFSSGKREGGDFTCSCLSPRGEWIYCIGEDLVLYCFSTSTGKLERTLTVHEKDVIGIVPHPHNNLLATYSEDGLLKLWKS 326
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1875.5902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX60_ECTSI1.160e-4488.10WD40 repeat-containing protein SMU1 n=2 Tax=Ectoca... [more]
A0A7S3XY04_HETAK2.330e-3157.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI00072E552E3.170e-2953.57WD40 repeat-containing protein SMU1-like n=1 Tax=P... [more]
A0A2G9NCG6_LITCT1.700e-2751.81Smu-1 suppressor of mec-8 and unc-52 protein homol... [more]
UPI0012ED6B311.960e-2753.01WD40 repeat-containing protein SMU1-like n=1 Tax=A... [more]
E4Z029_OIKDI3.620e-2752.44Smu-1 suppressor of mec-8 and unc-52 protein homol... [more]
UPI000549DDA64.700e-2753.01WD40 repeat-containing protein SMU1 n=1 Tax=Meleag... [more]
A0A4Z2E2F5_9TELE5.240e-2751.81Smu-1 suppressor of mec-8 and unc-52 protein homol... [more]
A0A212CMV6_CEREH1.110e-2653.01WD40 repeat-containing protein SMU1 n=1 Tax=Cervus... [more]
UPI001BB230D81.590e-2654.76WD40 repeat-containing protein SMU1-like isoform X... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1875contigEcto-sp13_S_contig1875:11271..11858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score159.8
Seed ortholog evalue5.5e-37
Seed eggNOG ortholog2880.D7FX60
Preferred nameSMU1
Model size258
KEGG koko:K13111
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0023052,GO:0030154,GO:0030182,GO:0031323,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046983,GO:0048024,GO:0048468,GO:0048513,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071840,GO:0072553,GO:0080008,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1902494,GO:1903311,GO:1990234,GO:1990904
Exons2
EggNOG free text desc.regulation of alternative mRNA splicing, via spliceosome
EggNOG OGsKOG0275@1,KOG0275@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-10_004400.1
Cds size258
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.1120093-CDS-Ecto-sp13_S_contig1875:11270..113251681462960.1120093-CDS-Ecto-sp13_S_contig1875:11270..11325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1875 11271..11325 -
1681462960.1242125-CDS-Ecto-sp13_S_contig1875:11655..118581681462960.1242125-CDS-Ecto-sp13_S_contig1875:11655..11858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1875 11656..11858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1875.5902.1prot_Ecto-sp13_S_contig1875.5902.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1875 11271..11858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1875.5902.1

>prot_Ecto-sp13_S_contig1875.5902.1 ID=prot_Ecto-sp13_S_contig1875.5902.1|Name=mRNA_Ecto-sp13_S_contig1875.5902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
PQILEHCAAEQSMRADFTCACLSPKGRWVYCAGEDGELFCFDAATTEVEK
TLKVSEKEIIGLAHHPHRNLLATFSNEGLLKLWKS*
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mRNA from alignment at Ecto-sp13_S_contig1875:11271..11858-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1875.5902.1 ID=mRNA_Ecto-sp13_S_contig1875.5902.1|Name=mRNA_Ecto-sp13_S_contig1875.5902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1875:11271..11858- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCAAATCCTTGAACATTGTGCTGCGGAACAGTCTATGCGCGCAGACTT
CACGTGCGCGTGCCTGTCTCCCAAGGGCCGGTGGGTGTACTGCGCGGGGG
AAGACGGGGAGTTGTTCTGCTTCGACGCGGCCACGACCGAGGTTGAGAAG
ACGCTCAAGGTTTCGGAGAAGGAGATCATCGGCCTGGCGCATCACCCCCA
CAGGTAAGCCATTGTCCACGCACTGCGAAAAGTGTCGCTCTCGATGCACG
AGATTAAGTGCGCCGTTGGTTTGAAGGTGTCACTCATTGATTCGAACGTT
TGCCGCTATGCTGCCCTCAGCGACAACGCCCGGGTGTGTGATGTATCAAG
AATTTGGTGACATCAAGACAATGATGCATGTCTTCAAGGAAGCGATGAGT
TGGAGGCGCGTTTCAGGGTGACGCAACATCGCGAAGAGCGACCGCCCTGC
ACTTTCGACCGCGGCCGCTCATCCTCCCCCCACCCGCCACCGCGGTCTAT
GTGCTGTTTGTTCGGTCCTGTTCCTCCTGGCAGAAACTTGCTGGCGACGT
TCAGCAACGAAGGGCTGCTAAAGCTTTGGAAGTCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1875:11271..11858-

>mRNA_Ecto-sp13_S_contig1875.5902.1 ID=mRNA_Ecto-sp13_S_contig1875.5902.1|Name=mRNA_Ecto-sp13_S_contig1875.5902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1875:11271..11858- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCAAATCCTTGAACATTGTGCTGCGGAACAGTCTATGCGCGCAGACTT
CACGTGCGCGTGCCTGTCTCCCAAGGGCCGGTGGGTGTACTGCGCGGGGG
AAGACGGGGAGTTGTTCTGCTTCGACGCGGCCACGACCGAGGTTGAGAAG
ACGCTCAAGGTTTCGGAGAAGGAGATCATCGGCCTGGCGCATCACCCCCA
CAGAAACTTGCTGGCGACGTTCAGCAACGAAGGGCTGCTAAAGCTTTGGA
AGTCATGA
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